View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4613-Insertion-12 (Length: 113)

Name: NF4613-Insertion-12
Description: NF4613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4613-Insertion-12
NF4613-Insertion-12
[»] chr1 (2 HSPs)
chr1 (8-113)||(16287330-16287435)
chr1 (8-113)||(17262328-17262433)


Alignment Details
Target: chr1 (Bit Score: 106; Significance: 2e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 16287330 - 16287435
Alignment:
Q  8 ctatccttactccaatcattgaaaaccgaacaaataagaacatgtggcgcaagtcacatatgttggacgtatttataggattgtttatttgttcgtatat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16287330 ctatccttactccaatcattgaaaaccgaacaaataagaacatgtggcgcaagtcacatatgttggacgtatttataggattgtttatttgttcgtatat 16287429  T
Q  108 tacgga 113  Q
    ||||||    
T  16287430 tacgga 16287435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 17262433 - 17262328
Alignment:
Q  8 ctatccttactccaatcattgaaaaccgaacaaataagaacatgtggcgcaagtcacatatgttggacgtatttataggattgtttatttgttcgtatat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17262433 ctatccttactccaatcattgaaaaccgaacaaataagaacatgtggcgcaagtcacatatgttggacgtatttataggattgtttattttttcgtatat 17262334  T
Q  108 tacgga 113  Q
    ||||||    
T  17262333 tacgga 17262328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University