View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4613-Insertion-3 (Length: 690)
Name: NF4613-Insertion-3
Description: NF4613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4613-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 6 - 474
Target Start/End: Original strand, 6633656 - 6634124
Alignment:
| Q |
6 |
cacaaacatgtctatatatacttcctctccccagttttcaaatcaccttaattattttcacctccagcttcagcttcagcttcagaggctgaaacatttg |
105 |
Q |
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| T |
6633656 |
cacaaacatgtctatatatacttcctctccccagttttcaaatcaccttaattattttcacctccagcttcagcttcagcttcagaggctgaaacatttg |
6633755 |
T |
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| Q |
106 |
tgttttcgacaacttcttccttagccgaagtctcttcctgtgcaaccacatcctctgcacacatacaaaaccaaattaatattcataatcaaagttcata |
205 |
Q |
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| T |
6633756 |
tgttttcgacaacttcttccttagccgaagtctcttcctgtgcaaccacatcctctgcacacatacaaaaccaaattaatattcataatcaaagttcata |
6633855 |
T |
|
| Q |
206 |
tgatacatgacaactttgaagaaagttccatgcatgatgcacnnnnnnnnnnnnnngtaaatagtcctaatttatctcaagaaaactctattggtttatt |
305 |
Q |
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| T |
6633856 |
tgatacatgacaactttgaagaaagttccatgcatgatgcacaaaaaaaaaaaaaagtaaataatcctaatttatctcaagaaaactctattggtttatt |
6633955 |
T |
|
| Q |
306 |
atgcacacctttttcattttcttcggccaattttttctcttcttcagtaccagcagcatcatcagcattgattttctcgtcattctttatcgatgcatgt |
405 |
Q |
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| T |
6633956 |
atgcacacttttttcattttcttcggccaattttttctcttcttcagtatcagcagcaccatcagcattgattttctcgtcattctttatcgatgcatgg |
6634055 |
T |
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| Q |
406 |
tcatcttttttctcaacttcagcagaaggttcctccacaacatcattctccttcttttcttcatcattt |
474 |
Q |
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| T |
6634056 |
tcatcttttttctcaacttcagcagaaggttcctccacaacatcctcctctttctttccttcatcattt |
6634124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 466 - 690
Target Start/End: Original strand, 6634056 - 6634280
Alignment:
| Q |
466 |
tcatcatttttctcaatttctttagaaggttcctccacaacatcctcctctttctttccttcatcatttattttctccatagcttcactgtctttaacat |
565 |
Q |
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||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6634056 |
tcatcttttttctcaacttcagcagaaggttcctccacaacatcctcctctttctttccttcatcatttattttctccatagcttcaccgtctttaacat |
6634155 |
T |
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| Q |
566 |
ccttagctgcatcgtccttattttcttcaacacctgcctctttgacactttcactttccttttgttcctcagcagctgaacttgtattgtcaacattatt |
665 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6634156 |
ccttagctgcatcgtccttattttcttcaacacctgcctctttgacactttcaatttccttttgttcctcagcagctgaacttgtattgtcaacattatt |
6634255 |
T |
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| Q |
666 |
gtttacgtctttggtttctgtctca |
690 |
Q |
| |
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||||| ||||||||||||||||||| |
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| T |
6634256 |
gtttatgtctttggtttctgtctca |
6634280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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