View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4613-Insertion-5 (Length: 623)
Name: NF4613-Insertion-5
Description: NF4613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4613-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 306 - 585
Target Start/End: Complemental strand, 27898080 - 27897801
Alignment:
| Q |
306 |
gacaagggaaacatcttgaacgtgaagaatattaataatgtgcaaaacattgggcattacatattacattgacatttaattctcataattttgacaagtc |
405 |
Q |
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| T |
27898080 |
gacaagtgaaacatcttgaacgtgaagaatattaataatgtgcaaaacattcggcattacatattacattgacatttaattttcataaatttgacaagtt |
27897981 |
T |
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| Q |
406 |
aagtacatctccccttcccctacctaattgtgaattgaagctgcatgtcaattgaaagtgtaacccgcacgtgcatcataccccaaccgacattacccaa |
505 |
Q |
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| T |
27897980 |
aagtacatctccccttcccctacctaattgtgaattgaagctgcatgtcaattgaaagtgtaacccgcacgtgcatcataccccaaccgacattacccaa |
27897881 |
T |
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| Q |
506 |
aatgttttacttgtatggggcacactgtacacgtgatgatccttaaaccaactttgtgacatacgtattagccaagaaaa |
585 |
Q |
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| T |
27897880 |
aatgttttacttgtatggggcacactgtacacgtgatgatccttaaaccaactttgtgacatacgtattagccaagaaaa |
27897801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 27898378 - 27898170
Alignment:
| Q |
8 |
gtaaatgtaaattaacgatgtacatttaacatttcaagaaaattacgtgtacgtttatcaagctaaattcatattcaacaacggattgtattatgatgca |
107 |
Q |
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| T |
27898378 |
gtaaatgtaaattaacgatgtacatttaacatttcaagaaaattacgtgtacgtttatcaagctaaattcatattcaacaatggattgtattatgatgca |
27898279 |
T |
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| Q |
108 |
aaaatttcaacttctcccattaaccaaaagaaaattaacataatgatccgtctatttatgggttctttgagagtgaaaatgacttgtttcttgatgatat |
207 |
Q |
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| T |
27898278 |
aaaatttcaacttctcccattaaccaaaagaaaattaacataatgatccgtctatttatgggttctttgagagtgaaaatgacttgtttcttgatgatat |
27898179 |
T |
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| Q |
208 |
ttaagattc |
216 |
Q |
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||||||||| |
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| T |
27898178 |
ttaagattc |
27898170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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