View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4613-Insertion-6 (Length: 544)
Name: NF4613-Insertion-6
Description: NF4613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4613-Insertion-6 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 296 - 544
Target Start/End: Original strand, 2708531 - 2708779
Alignment:
| Q |
296 |
aacaatatacaaacatttgcattagtgctaaacattaactattgtctgttcacacaatcaacagaatatataccttgtctgcactatgcttcaacttgta |
395 |
Q |
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| T |
2708531 |
aacaatatacaaacatttgcattagtgcttaacattaactattgtctgttcacacaatcaacagaatatataccttgtctgcactatgcttcaacttgta |
2708630 |
T |
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| Q |
396 |
tattgataggctacgagacaaacccaacctcataggaggcatatcttgaacggcaagatcagttacaagttctgtcaactgatatcgaatacctcgcatt |
495 |
Q |
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| T |
2708631 |
tattgataggctaccagacaaacccaacctcatcggaggcatatcttgaacggcgagatcagttacaagttctgtcaactgatatcgaatacctcgcatt |
2708730 |
T |
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| Q |
496 |
agctccataacagcgttgttgtgaaaacatttgattctctgcaaagtaa |
544 |
Q |
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| T |
2708731 |
agctccataacagcgttgttgtgaaaacatttgattttctgcaaagtaa |
2708779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 367 - 539
Target Start/End: Original strand, 2702663 - 2702835
Alignment:
| Q |
367 |
accttgtctgcactatgcttcaacttgtatattgataggctacgagacaaacccaacctcataggaggcatatcttgaacggcaagatcagttacaagtt |
466 |
Q |
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| T |
2702663 |
accttgtctgcactgaacttcaacttgtatcttgataggctatgagacaaacccaagctcatcggagccatgtcttgaacagcgaggccagttatgagtt |
2702762 |
T |
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| Q |
467 |
ctgtcaactgatatcgaatacctcgcattagctccataacagcgttgttgtgaaaacatttgattctctgcaa |
539 |
Q |
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| T |
2702763 |
ccgtcaactgatatcgaatacctcgcattatctccataacagcattgctgtgaacacagtcgattttctgcaa |
2702835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 2702422 - 2702504
Alignment:
| Q |
15 |
ggaaaatgccagccata---ttctcgaaccctcatggcatatgcattcaattctttatcaaaattgtcaagtaaaccaatagc |
94 |
Q |
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| T |
2702422 |
ggaaaatgccagccataccattctcgaaccctcatggcatatgtattcaactctttatcgaggtcgtcgagtaaaccaatagc |
2702504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 536
Target Start/End: Complemental strand, 26713866 - 26713695
Alignment:
| Q |
365 |
ataccttgtctgcactatgcttcaacttgtatattgataggctacgagacaaacccaacctcataggaggcatatcttgaacggcaagatcagttacaag |
464 |
Q |
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| T |
26713866 |
ataccttgtcggcgctaaacttcagcctgtatctggataagctatgagacaaacccaagctcataggggccatgtcttgaacagctagacctgctatgag |
26713767 |
T |
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| Q |
465 |
ttctgtcaactgatatcgaatacctcgcattagctccataacagcgttgttgtgaaaacatttgattctctg |
536 |
Q |
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| T |
26713766 |
ttcattcaattgatatctgacacctctcatcaactccataacagcattgttgtgaacacattcgattttctg |
26713695 |
T |
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