View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4613-Insertion-7 (Length: 540)

Name: NF4613-Insertion-7
Description: NF4613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4613-Insertion-7
NF4613-Insertion-7
[»] chr4 (1 HSPs)
chr4 (33-540)||(31107524-31108032)


Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 33 - 540
Target Start/End: Original strand, 31107524 - 31108032
Alignment:
Q  33 caaatagaataaagtgttgaatacgccactaaaattttcattgagattttgtctgcgtcattgcctttgtgtgaaattgattgggaaaagcgagcatgat 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31107524 caaatagaataaagtgttgaatacgccactaaaattttcattgagattttgtctgcgtcattgcctttgtgtgaaattgattgggaaaagcgagcatgat 31107623  T
Q  133 gatgaaggtaaccactaaaccagccatactacaaacttaacaaagcaatctctgaaaatccagaatataactagatgttgaggactacttgaggtattgt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31107624 gatgaaggtaaccactaaaccagccatactacaaacttaacaaagcaatctctgaaaatccagaatataactagatgttgaggactacttgaggtattgt 31107723  T
Q  233 tttttnnnnnnnnn-tgaaaattatgaggtacatagaaatatgtatttaaatttatagatcagttacgatgcaagaaaaaatgataccttataaacaata 331  Q
    |||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31107724 tttttaaaaaaaaaatgaaaattatgaggtacatagaaatatgtatttaaatttatagatcagttacgatgcaagaaaaaatgatacgttataaacaata 31107823  T
Q  332 agctcaaacatggatctcaaaatctttataaagcttatcagaaaattatcgttaccaaacaactctgtcaccatnnnnnnnttataaatgattagatatc 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||       |||||||||||||||||||    
T  31107824 agctcaaacatggatctcaaaatctttataaagcttatcagaaaattatcgttaccaaacaactctatcaccataaaaaaattataaatgattagatatc 31107923  T
Q  432 agatcattgatcaatatgcaaaaaagtcttcattaatttcccaacttcacctagctgcataaccttactactttaacattatcaaacctcagatacataa 531  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  31107924 agatcattgatcaatatgcaaaaaagtcttcatttatttcccaactttacctagctgcataaccttactactttaacactatcaaacctcagatacatga 31108023  T
Q  532 actgagtta 540  Q
    |||||||||    
T  31108024 actgagtta 31108032  T

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