View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4613_high_1 (Length: 557)

Name: NF4613_high_1
Description: NF4613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4613_high_1
NF4613_high_1
[»] chr5 (22 HSPs)
chr5 (1-337)||(10215569-10215905)
chr5 (234-539)||(10212170-10212475)
chr5 (301-543)||(13855925-13856167)
chr5 (244-539)||(10105801-10106097)
chr5 (308-539)||(10109214-10109445)
chr5 (267-540)||(10102715-10102991)
chr5 (300-539)||(10209685-10209924)
chr5 (400-543)||(12104608-12104751)
chr5 (352-530)||(12109354-12109533)
chr5 (33-207)||(13854744-13854918)
chr5 (389-540)||(9674763-9674918)
chr5 (308-449)||(9660199-9660340)
chr5 (24-132)||(10211852-10211960)
chr5 (371-449)||(10215906-10215984)
chr5 (489-550)||(10215979-10216040)
chr5 (397-451)||(37278735-37278789)
chr5 (393-452)||(3467667-3467726)
chr5 (163-214)||(10104247-10104298)
chr5 (163-214)||(10107727-10107778)
chr5 (67-117)||(10104351-10104401)
chr5 (479-529)||(10219135-10219185)
chr5 (301-381)||(9674059-9674140)
[»] chr8 (5 HSPs)
chr8 (308-452)||(31555089-31555233)
chr8 (308-452)||(31878236-31878380)
chr8 (325-530)||(31558191-31558396)
chr8 (398-445)||(13568429-13568476)
chr8 (343-452)||(4042194-4042303)
[»] chr1 (11 HSPs)
chr1 (348-522)||(10542321-10542496)
chr1 (324-455)||(42202365-42202496)
chr1 (324-455)||(42211233-42211364)
chr1 (317-451)||(45151994-45152128)
chr1 (324-456)||(2176292-2176424)
chr1 (347-455)||(42409594-42409702)
chr1 (317-452)||(45316380-45316515)
chr1 (388-452)||(43014366-43014430)
chr1 (341-451)||(51795018-51795128)
chr1 (389-455)||(42217273-42217339)
chr1 (393-453)||(42417640-42417700)
[»] chr7 (6 HSPs)
chr7 (308-452)||(3649475-3649619)
chr7 (308-452)||(3647026-3647170)
chr7 (308-443)||(3657601-3657736)
chr7 (394-447)||(3641211-3641264)
chr7 (341-380)||(3656176-3656215)
chr7 (388-435)||(19523283-19523330)
[»] chr4 (6 HSPs)
chr4 (350-456)||(25698804-25698910)
chr4 (308-452)||(17889422-17889566)
chr4 (356-437)||(46362507-46362588)
chr4 (385-433)||(36790854-36790902)
chr4 (388-452)||(49588194-49588258)
chr4 (398-438)||(20918685-20918725)
[»] chr3 (2 HSPs)
chr3 (342-455)||(46446211-46446324)
chr3 (313-452)||(21884021-21884160)
[»] chr6 (2 HSPs)
chr6 (388-452)||(33891592-33891656)
chr6 (397-451)||(27868671-27868725)
[»] chr2 (4 HSPs)
chr2 (349-443)||(26568347-26568441)
chr2 (388-457)||(5900520-5900589)
chr2 (388-425)||(43633443-43633480)
chr2 (397-450)||(2341338-2341391)


Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 10215569 - 10215905
Alignment:
Q  1 aacattttattaccccaccatatatttcgacagcagaataccctattttgtcatgtccaatgttaacatgcgaaatgactagtgccaagagtaacattgt 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10215569 aacattttattatcccaccatatatttcgacagcagaataccctattttgtcatgtccattgttaacatgcgaaatgactagtgccaagagtaacattgt 10215668  T
Q  101 attgcagaaaccactatctccagaatgttactgattatcatataactaatcattattatcagtaaatcaagtcaacatatgtctatgaagttatgcaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  10215669 attgcagaaaccactatctccagaatgttactgattatcatataactaatcattattatcaataaatcaagtcaacataggtctatgaagttatgcaatc 10215768  T
Q  201 atctcaagactaattaatcggcttaaacatattatacaattggtaaagaactcccttaaacaagtagcataccaaaaacatagtaaccacataaaaatag 300  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||  |||||||||||| || ||||||||| |||||||||||||||    
T  10215769 atctcaagactaattaatcagcttaaacatattatacaagtggtaaagaactcccttgcacaagtagcatatcagaaacatagttaccacataaaaatag 10215868  T
Q  301 gaataggaaaatattgaactaaaattgcagagcccta 337  Q
    |||||||||||||||||||||||||||||||||||||    
T  10215869 gaataggaaaatattgaactaaaattgcagagcccta 10215905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 234 - 539
Target Start/End: Original strand, 10212170 - 10212475
Alignment:
Q  234 atacaattggtaaagaactcccttaaacaagtagcataccaaaaacatagtaaccacataaaaataggaataggaaaatattgaactaaaattgcagagc 333  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| | ||||| |||||||||| ||||||||||||||||    
T  10212170 atacaagtggtaaagaactcccttaaacaagtagcataccaataacatagtaaccacaaaaaaacaagaataagaaaatattgtactaaaattgcagagc 10212269  T
Q  334 cctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtg 433  Q
    | |  || | || ||||||||||||||||||||||||||||||||||| |  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10212270 cttcggtgaggaggactcttccaaaaactagcgtatgccgctaattgtgacactcacacagtattctttagtaaaaggcgaaagaatagttcgctatgtg 10212369  T
Q  434 atcaacacacggctccgtgctttaaggaggtagaggtgctgtcaatttatatgtgagctgcatagtttagtttatgaattggtcgatgttggactttatc 533  Q
    |||| ||||||||||||| | |   ||||||||||||  | ||| ||||||||||| | ||||||||||||||||| |||||| ||||| |||| |||||    
T  10212370 atcatcacacggctccgtacctattggaggtagaggtcatttcattttatatgtgatcagcatagtttagtttatgcattggtagatgtgggacattatc 10212469  T
Q  534 agacac 539  Q
    ||||||    
T  10212470 agacac 10212475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 301 - 543
Target Start/End: Complemental strand, 13856167 - 13855925
Alignment:
Q  301 gaataggaaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattct 400  Q
    ||||||||||||||||||||||||||||| |||||| ||| |||| |||||| ||||||||||| ||||||||||||| | || ||||||||||||||||    
T  13856167 gaataggaaaatattgaactaaaattgcaaagccctctgtgaagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattct 13856068  T
Q  401 ttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctttaaggaggtagaggtgctgtcaatttatatgtgagctgcatagtt 500  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||  | ||||||||||| || ||  ||||||||||| ||||||||||    
T  13856067 ttagtaaaaggcgaaagaatagttcgctatgtgatcatcactcggctccgtgcttgtaagaggtagaggtcctttctttttatatgtgaactgcatagtt 13855968  T
Q  501 tagtttatgaattggtcgatgttggactttatcagacacccac 543  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||    
T  13855967 tagtttatgaattggttgatgtgggactctatcagacacccac 13855925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 244 - 539
Target Start/End: Complemental strand, 10106097 - 10105801
Alignment:
Q  244 taaagaactcccttaaacaagtagcataccaaaa-acatagtaaccacataaaaataggaataggaaaatattgaactaaaattgcagagccctatgtaa 342  Q
    |||| |||| |||||||||| |||||||||| |  |||||| ||| |||| |||| | |||||  |||| ||||||||||| ||||||||||||   |||    
T  10106097 taaataactaccttaaacaaatagcataccatattacatagcaactacattaaaaaaagaatacaaaaaaattgaactaaatttgcagagccctcaataa 10105998  T
Q  343 agaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacaca 442  Q
    ||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10105997 agaggactcttccaaaaactagcgtatgccgctaattatgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcaca 10105898  T
Q  443 cggctccgtgctttaaggaggtagaggtgctgtcaatttatatgtgagctgcatagtttagtttatgaattggtcgatgttggactttatcagacac 539  Q
    ||||||||||||| ||  | |||||| | || ||| ||||||||  ||||||||||||||||||||||| ||| |||||| ||||||| ||||||||    
T  10105897 cggctccgtgcttaaaaaaagtagagatcctttcattttatatgaaagctgcatagtttagtttatgaactgggcgatgtgggactttgtcagacac 10105801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 308 - 539
Target Start/End: Complemental strand, 10109445 - 10109214
Alignment:
Q  308 aaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaa 407  Q
    |||| ||| ||||||||||||||||||||   |||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  10109445 aaaaaatttaactaaaattgcagagccctccataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaa 10109346  T
Q  408 aaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgct-ttaaggaggtagaggtgctgtcaatttatatgtgagctgcatagtttagttt 506  Q
    |||||||||||||||||||||||||||||| |||||||||||||| | || |  ||| |||||| || ||  ||||||||  ||||||||||||||||||    
T  10109345 aaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgatctttacaagg-agaggttctatctttttatatgcaagctgcatagtttagttt 10109247  T
Q  507 atgaattggtcgatgttggactttatcagacac 539  Q
    ||||||||| |||||| ||||||||||||||||    
T  10109246 atgaattgggcgatgtgggactttatcagacac 10109214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 267 - 540
Target Start/End: Complemental strand, 10102991 - 10102715
Alignment:
Q  267 gcataccaaaaacatagtaaccacataaaaatag--gaataggaaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactag 364  Q
    ||||||||| ||||||| |||||||||||||||   |||||  |||||||||||||||| ||||||||||||   | |||| ||||||||||||||||||    
T  10102991 gcataccaataacatagcaaccacataaaaataaaagaatacaaaaatattgaactaaatttgcagagccctcaatgaagaggactcttccaaaaactag 10102892  T
Q  365 cgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgt--gctttaaggag 462  Q
     |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    |||||  ||    
T  10102891 tgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacagctccgtaaattttaacaag 10102792  T
Q  463 gtagaggtgctgtcaatttatatgtgagctgcatagtttagtttatgaattggtcgatgttggactttatcagacacc 540  Q
     | |||||  | ||  |||||| || ||| |||||||||||||||||||||||||||||| ||| |||||| ||||||    
T  10102791 ct-gaggtcttttcgttttataagtaagcagcatagtttagtttatgaattggtcgatgtgggagtttatccgacacc 10102715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 300 - 539
Target Start/End: Original strand, 10209685 - 10209924
Alignment:
Q  300 ggaataggaaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattc 399  Q
    ||||||| |||  ||||||||||||||||||||||||   ||||||  |||||||||||||||| |||||||| || ||||| | |||||||||||||||    
T  10209685 ggaatagaaaatcattgaactaaaattgcagagccctccataaagagaactcttccaaaaactaacgtatgccactcattgtgacgctcacacggtattc 10209784  T
Q  400 tttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctttaaggaggtagaggtgctgtcaatttatatgtgagctgcatagt 499  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||| |  | | | |||| || ||  ||||||||  |||||||||||    
T  10209785 tttagtaaaaggcgaaagaatagttcgctatgtgttcatcacacggctccgtgattttaacaaggataggtcctatctttttatatgcaagctgcatagt 10209884  T
Q  500 ttagtttatgaattggtcgatgttggactttatcagacac 539  Q
    |||||||||||||||| |||||| ||||||||| ||||||    
T  10209885 ttagtttatgaattgggcgatgtgggactttattagacac 10209924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 400 - 543
Target Start/End: Original strand, 12104608 - 12104751
Alignment:
Q  400 tttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctttaaggaggtagaggtgctgtcaatttatatgtgagctgcatagt 499  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||  | || |||||||| || ||  ||||||||||||||||||| |    
T  12104608 tttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttacaagaagtagaggtcctatctttttatatgtgagctgcataat 12104707  T
Q  500 ttagtttatgaattggtcgatgttggactttatcagacacccac 543  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||    
T  12104708 ttagtttatgaattggtcgatgtgggactttattagacacccac 12104751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 352 - 530
Target Start/End: Original strand, 12109354 - 12109533
Alignment:
Q  352 ttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgt 451  Q
    ||||||||||||||||||||| | |||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||  |||||||||    
T  12109354 ttccaaaaactagcgtatgccacaaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagtttgctatgtgatcatcaggcggctccgt 12109453  T
Q  452 gctttaaggaggtagaggtgctgtcaatttatatgtgagctgcatagttt-agtttatgaattggtcgatgttggacttt 530  Q
    ||||   ||||||||||||  | ||| ||||||| ||||  || |||||| |||||||| |||||||||||| |||||||    
T  12109454 gcttattggaggtagaggtcatttcattttatatatgagaagcttagtttcagtttatgcattggtcgatgtgggacttt 12109533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 13854918 - 13854744
Alignment:
Q  33 gcagaataccctattttgtcatgtccaatgttaacatgcgaaatgactagtgccaagagtaacattgtattgcagaaaccactatctccagaatgttact 132  Q
    |||||||||||| ||||||| || ||| ||||||||| ||||||||||||||| |||| |||||| | |||||| |||| ||||||||| ||| ||||||    
T  13854918 gcagaataccctcttttgtcctggccattgttaacatacgaaatgactagtgctaagaataacatggcattgcaaaaactactatctccggaacgttact 13854819  T
Q  133 gattatcatataactaatcattattatcagtaaatcaagtcaacatatgtctatgaagttatgcaatcatctcaa 207  Q
    |||||||| ||||| ||||||| | |||  |||||||||||| |||  |||||||||||||||| ||||| ||||    
T  13854818 gattatcaaataacaaatcattgtcatccataaatcaagtcagcattggtctatgaagttatgctatcatttcaa 13854744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 389 - 540
Target Start/End: Original strand, 9674763 - 9674918
Alignment:
Q  389 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacaca---cggctccgtgctttaaggaggtagaggtgctgtcaatttatat 485  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||| ||||   ||||||||||||||||  |||||||||| || | | |||||||    
T  9674763 acacggtattctttagtaaaaggcgaaagaatagttcactttgtgatcatcacacggcggctccgtgctttaaaaaggtagaggttctttaattttatat 9674862  T
Q  486 gtgagctgcatagtttagtttatgaattggtcgatgttggacttta-tcagacacc 540  Q
    |||||| ||||||||||| ||||| |||||  ||||| |||||||| |||||||||    
T  9674863 gtgagcagcatagtttagcttatgcattggaggatgtgggactttagtcagacacc 9674918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 308 - 449
Target Start/End: Original strand, 9660199 - 9660340
Alignment:
Q  308 aaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaa 407  Q
    |||||||||||||||||||||||||| ||   | || | |||||||||||||||| || ||||| ||||||||| | | |||||| ||||||||||||||    
T  9660199 aaaatattgaactaaaattgcagagcactccatgaataggactcttccaaaaactggcatatgctgctaattgtgacgttcacacagtattctttagtaa 9660298  T
Q  408 aaggcgaaagaatagttcgctatgtgatcaacacacggctcc 449  Q
    ||||| ||| |||||||||||||||||||| |||| ||||||    
T  9660299 aaggcaaaataatagttcgctatgtgatcatcacaaggctcc 9660340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 10211852 - 10211960
Alignment:
Q  24 atttcgacagcagaataccctattttgtcatgtccaatgttaacatgcgaaatgactagtgccaagagtaacattgtattgcagaaaccactatctccag 123  Q
    ||||||||||||||||||||| ||||||| || ||| ||||||||||| |||| |||||||  |||||||| || |||||||||||||||| ||||||||    
T  10211852 atttcgacagcagaataccctcttttgtcctggccattgttaacatgcaaaattactagtgttaagagtaaaatggtattgcagaaaccaccatctccag 10211951  T
Q  124 aatgttact 132  Q
    |||||||||    
T  10211952 aatgttact 10211960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 371 - 449
Target Start/End: Original strand, 10215906 - 10215984
Alignment:
Q  371 ccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctcc 449  Q
    |||||||||||||  |||||| |||||||||||||||||||| |||||||||||  ||||||||||||||||| |||||    
T  10215906 ccgctaattgtaacactcacaaggtattctttagtaaaaggcaaaagaatagtttactatgtgatcaacacacagctcc 10215984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 489 - 550
Target Start/End: Original strand, 10215979 - 10216040
Alignment:
Q  489 agctgcatagtttagtttatgaattggtcgatgttggactttatcagacacccacaggttct 550  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||    
T  10215979 agctccatagtttagtttctgaattggtcgatgtgggactttatcagacacccacatgttct 10216040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 451
Target Start/End: Original strand, 37278735 - 37278789
Alignment:
Q  397 ttctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgt 451  Q
    |||||||||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  37278735 ttctttagtaaaaggcgaaagaatagttcgttatgtgctcatcacacggctccgt 37278789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 393 - 452
Target Start/End: Original strand, 3467667 - 3467726
Alignment:
Q  393 ggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 452  Q
    |||||||||||||||||||||||||||||||| ||| || | ||| ||||||||| ||||    
T  3467667 ggtattctttagtaaaaggcgaaagaatagtttgctttgagctcatcacacggctgcgtg 3467726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 10104298 - 10104247
Alignment:
Q  163 taaatcaagtcaacatatgtctatgaagttatgcaatcatctcaagactaat 214  Q
    |||||||||||||||   ||||||||| ||||||||||||||||||||||||    
T  10104298 taaatcaagtcaacaatggtctatgaaattatgcaatcatctcaagactaat 10104247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 10107778 - 10107727
Alignment:
Q  163 taaatcaagtcaacatatgtctatgaagttatgcaatcatctcaagactaat 214  Q
    |||||||||||||||   ||||||||| ||||||||||||||||||||||||    
T  10107778 taaatcaagtcaacaatggtctatgaaattatgcaatcatctcaagactaat 10107727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 10104401 - 10104351
Alignment:
Q  67 catgcgaaatgactagtgccaagagtaacattgtattgcagaaaccactat 117  Q
    ||||| ||||||||||||| ||||||||||| ||||||||||||| |||||    
T  10104401 catgccaaatgactagtgctaagagtaacatggtattgcagaaactactat 10104351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 529
Target Start/End: Original strand, 10219135 - 10219185
Alignment:
Q  479 tttatatgtgagctgcatagtttagtttatgaattggtcgatgttggactt 529  Q
    |||||| || ||| |||||||||||||||||||||||| ||||| ||||||    
T  10219135 tttataagtaagcagcatagtttagtttatgaattggttgatgtgggactt 10219185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 381
Target Start/End: Original strand, 9674059 - 9674140
Alignment:
Q  301 gaataggaaaatattgaactaaaattgcagagccctatgtaaagaagactctt-ccaaaaactagcgtatgccgctaattgt 381  Q
    |||| |||||| |||| ||||| |||||||||||||   | |||| ||||||| |||||||||||| |||||||| ||||||    
T  9674059 gaatgggaaaacattgtactaatattgcagagccctcaatgaagatgactctttccaaaaactagcatatgccgcaaattgt 9674140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 308 - 452
Target Start/End: Original strand, 31555089 - 31555233
Alignment:
Q  308 aaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaa 407  Q
    |||| ||| |||||| |||||||||||||   |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  31555089 aaaaaattaaactaatattgcagagccctcaataaagaagactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaa 31555188  T
Q  408 aaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 452  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  31555189 aaggcgaaagaatagttcgctatgtgatcatcacacggctccgtg 31555233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 308 - 452
Target Start/End: Complemental strand, 31878380 - 31878236
Alignment:
Q  308 aaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaa 407  Q
    |||| ||| |||||| |||||||||||||   |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  31878380 aaaaaattaaactaatattgcagagccctcaataaagaagactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaa 31878281  T
Q  408 aaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 452  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  31878280 aaggcgaaagaatagttcgctatgtgatcatcacacggctccgtg 31878236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 325 - 530
Target Start/End: Original strand, 31558191 - 31558396
Alignment:
Q  325 ttgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagtt 424  Q
    ||||||||||||   || ||| |||||||| |||||||| ||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||    
T  31558191 ttgcagagccctcaatatagaggactcttctaaaaactaacgtatgccgctaattgtgacgttcacacggtattctttagtaaaaggcgaaagaatagtt 31558290  T
Q  425 cgctatgtgatcaacacacggctccgtgctttaaggaggtagaggtgctgtcaatttatatgtgagctgcatagtttagtttatgaattggtcgatgttg 524  Q
    ||||||||||||| ||||||||||| |||||  |  ||||||| ||||| ||| ||||||||  ||| || | |||  ||||||| ||||| |||||| |    
T  31558291 cgctatgtgatcatcacacggctccatgcttataaaaggtagaagtgctttcagtttatatgcaagcagcttggttgggtttatgcattggccgatgtgg 31558390  T
Q  525 gacttt 530  Q
    ||||||    
T  31558391 gacttt 31558396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 445
Target Start/End: Original strand, 13568429 - 13568476
Alignment:
Q  398 tctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacgg 445  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||    
T  13568429 tctttagtaaaaggcgaaagaatagttcgctatgtgattatcacacgg 13568476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 452
Target Start/End: Original strand, 4042194 - 4042303
Alignment:
Q  343 agaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacaca 442  Q
    |||||||||||||||||| | || ||||||| |||| || | |  | ||| |||||||||||| |||||||||||||||||| ||| || | ||| ||||    
T  4042194 agaagactcttccaaaaattggcatatgccgttaatagtgacgagcccacagtattctttagtcaaaggcgaaagaatagtttgctttgagctcatcaca 4042293  T
Q  443 cggctccgtg 452  Q
    ||||| ||||    
T  4042294 cggctgcgtg 4042303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 348 - 522
Target Start/End: Complemental strand, 10542496 - 10542321
Alignment:
Q  348 actcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggct 447  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10542496 actcttccaaaaactagcgtatgccgctaattgtaacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggct 10542397  T
Q  448 ccgtgcttta-aggaggtagaggtgctgtcaatttatatgtgagctgcatagtttagtttatgaattggtcgatgt 522  Q
    |||||||||| |   | |||| || || ||| ||||||||||||| || ||||| |||| ||| ||| ||||||||    
T  10542396 ccgtgctttataactgttagatgtcctttcattttatatgtgagcagcttagttaagttgatgtattagtcgatgt 10542321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 324 - 455
Target Start/End: Original strand, 42202365 - 42202496
Alignment:
Q  324 attgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagt 423  Q
    |||||||||||||    ||||||||||||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||||||    
T  42202365 attgcagagccctccaaaaagaagactcttccaaaaactagcgtatgccgctaaatgtgacgctgacacggtattctttagtaaaaggcgaaagaatagt 42202464  T
Q  424 tcgctatgtgatcaacacacggctccgtgctt 455  Q
    ||||||||| ||||||||||||||||||||||    
T  42202465 tcgctatgtcatcaacacacggctccgtgctt 42202496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 324 - 455
Target Start/End: Original strand, 42211233 - 42211364
Alignment:
Q  324 attgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagt 423  Q
    |||||||||||||    ||||||||||||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||||||    
T  42211233 attgcagagccctccaaaaagaagactcttccaaaaactagcgtatgccgctaaatgtgacgctgacacggtattctttagtaaaaggcgaaagaatagt 42211332  T
Q  424 tcgctatgtgatcaacacacggctccgtgctt 455  Q
    ||||||||| ||||||||||||||||||||||    
T  42211333 tcgctatgtcatcaacacacggctccgtgctt 42211364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 317 - 451
Target Start/End: Complemental strand, 45152128 - 45151994
Alignment:
Q  317 aactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaa 416  Q
    |||||| |||||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||| |  || ||||||||||||||||||||||||||||    
T  45152128 aactaatattgcagagccctccgtaaagaggactcttccaaaaactagcgtatgccgctaaatgtgacactgacacggtattctttagtaaaaggcgaaa 45152029  T
Q  417 gaatagttcgctatgtgatcaacacacggctccgt 451  Q
    |||||||||||||||| || | |||||||||||||    
T  45152028 gaatagttcgctatgtcattatcacacggctccgt 45151994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 324 - 456
Target Start/End: Original strand, 2176292 - 2176424
Alignment:
Q  324 attgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagt 423  Q
    ||||||||| |||  || || ||||||||||||||||||||||||||||||||| ||| |  || |||||||||||||||||||||||||||||||||||    
T  2176292 attgcagagtcctccgttaaaaagactcttccaaaaactagcgtatgccgctaaatgtgacactgacacggtattctttagtaaaaggcgaaagaatagt 2176391  T
Q  424 tcgctatgtgatcaacacacggctccgtgcttt 456  Q
    ||||||||| || | |||||| |||||||||||    
T  2176392 tcgctatgtcattatcacacgtctccgtgcttt 2176424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 347 - 455
Target Start/End: Complemental strand, 42409702 - 42409594
Alignment:
Q  347 gactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggc 446  Q
    ||||||||||||||||| |||||| || ||| ||| | ||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||    
T  42409702 gactcttccaaaaactaacgtatgtcgttaaatgtgacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacagc 42409603  T
Q  447 tccgtgctt 455  Q
    |||||||||    
T  42409602 tccgtgctt 42409594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 317 - 452
Target Start/End: Original strand, 45316380 - 45316515
Alignment:
Q  317 aactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaa 416  Q
    |||||| |||||||||||||   | |||| | ||||||||||||||| ||||||||| |||  || | | | ||||||||||||||||||||||||||||    
T  45316380 aactaatattgcagagccctcaattaagagggctcttccaaaaactaacgtatgccgttaaaagtgacgttgacacggtattctttagtaaaaggcgaaa 45316479  T
Q  417 gaatagttcgctatgtgatcaacacacggctccgtg 452  Q
    |||||||||||||||| |||| ||||||||||||||    
T  45316480 gaatagttcgctatgtcatcatcacacggctccgtg 45316515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 388 - 452
Target Start/End: Original strand, 43014366 - 43014430
Alignment:
Q  388 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  43014366 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 43014430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 341 - 451
Target Start/End: Complemental strand, 51795128 - 51795018
Alignment:
Q  341 aaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaaca 440  Q
    ||||| ||||||||||||||||||| |||||||| || ||| | | | | ||| |||||||||||||||||||||| ||||||| ||||||| |||| ||    
T  51795128 aaagatgactcttccaaaaactagcatatgccgcaaaatgtgacgttgatacgctattctttagtaaaaggcgaaacaatagtttgctatgtcatcatca 51795029  T
Q  441 cacggctccgt 451  Q
    ||||| |||||    
T  51795028 cacggttccgt 51795018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 389 - 455
Target Start/End: Original strand, 42217273 - 42217339
Alignment:
Q  389 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctt 455  Q
    |||| |||||||||||||||||||||||||||||||||||||||  ||| ||||||||||| |||||    
T  42217273 acacagtattctttagtaaaaggcgaaagaatagttcgctatgtcgtcatcacacggctccatgctt 42217339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 42417700 - 42417640
Alignment:
Q  393 ggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgc 453  Q
    ||||||||||||||||||||||||||||| |||||||||| |||| ||||| |||||||||    
T  42417700 ggtattctttagtaaaaggcgaaagaataattcgctatgtcatcatcacacagctccgtgc 42417640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 7e-38; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 308 - 452
Target Start/End: Complemental strand, 3649619 - 3649475
Alignment:
Q  308 aaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaa 407  Q
    |||| |||||||||| |||||||||||||   | |||| ||| ||||||||||||||| ||||||| ||||||| ||||| |||||||||||||||||||    
T  3649619 aaaaaattgaactaatattgcagagccctcaattaagaggacccttccaaaaactagcatatgccgataattgtgatgctaacacggtattctttagtaa 3649520  T
Q  408 aaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 452  Q
    ||||||||||||||||||||||||| |||| |||||  |||||||    
T  3649519 aaggcgaaagaatagttcgctatgtcatcatcacacaactccgtg 3649475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 308 - 452
Target Start/End: Complemental strand, 3647170 - 3647026
Alignment:
Q  308 aaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaa 407  Q
    |||| |||| ||||| |||||||||||||   |||||| ||| ||| |||||||||| ||||||||||||| || | ||| |||||||||||||||||||    
T  3647170 aaaacattgcactaacattgcagagccctcaataaagaggaccctttcaaaaactagtgtatgccgctaatagtgacgctgacacggtattctttagtaa 3647071  T
Q  408 aaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 452  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||||    
T  3647070 aaggcgaaagaatagtttgctatgtcatcatcacacggctccgtg 3647026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 308 - 443
Target Start/End: Complemental strand, 3657736 - 3657601
Alignment:
Q  308 aaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaa 407  Q
    |||| |||||||||| ||||||||| |||   |||||| ||  |||||||||||||| ||||||||||| |||| | ||| |||||||||||||||||||    
T  3657736 aaaaaattgaactaatattgcagagtcctcgataaagatgatccttccaaaaactagtgtatgccgctatttgtgacgctgacacggtattctttagtaa 3657637  T
Q  408 aaggcgaaagaatagttcgctatgtgatcaacacac 443  Q
    ||||||||||||||||||||||||| |||| |||||    
T  3657636 aaggcgaaagaatagttcgctatgtcatcatcacac 3657601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 394 - 447
Target Start/End: Complemental strand, 3641264 - 3641211
Alignment:
Q  394 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggct 447  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  3641264 gtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacggct 3641211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 380
Target Start/End: Complemental strand, 3656215 - 3656176
Alignment:
Q  341 aaagaagactcttccaaaaactagcgtatgccgctaattg 380  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  3656215 aaagaggactcttccaaaaactagcgtatgcccctaattg 3656176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 435
Target Start/End: Original strand, 19523283 - 19523330
Alignment:
Q  388 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgat 435  Q
    ||||||| |||||||||||||||||||||||||  |||||| ||||||    
T  19523283 cacacggaattctttagtaaaaggcgaaagaattattcgctctgtgat 19523330  T

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Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 350 - 456
Target Start/End: Complemental strand, 25698910 - 25698804
Alignment:
Q  350 tcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctcc 449  Q
    |||||||||||||||||||||||||||||| | | ||||||||||||||||||| ||||||||||||||||||| | ||||||||||| ||||| |||||    
T  25698910 tcttccaaaaactagcgtatgccgctaattatgacgctcacacggtattctttaataaaaggcgaaagaatagtccactatgtgatcatcacacagctcc 25698811  T
Q  450 gtgcttt 456  Q
    |||||||    
T  25698810 gtgcttt 25698804  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 308 - 452
Target Start/End: Complemental strand, 17889566 - 17889422
Alignment:
Q  308 aaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaa 407  Q
    |||||||| |||||| |||||||| ||||   ||| || ||||||| |||||| ||||||||||||||  | || | |  ||||||||||||||||||||    
T  17889566 aaaatattaaactaatattgcagaaccctcattaaggaggactctttcaaaaattagcgtatgccgcttttagtgacgtgcacacggtattctttagtaa 17889467  T
Q  408 aaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 452  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  17889466 aaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 17889422  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 356 - 437
Target Start/End: Original strand, 46362507 - 46362588
Alignment:
Q  356 aaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatca 437  Q
    |||||||| ||||| ||||||| ||| ||||| ||| ||||||||||||||||| |||||| ||||||||||||||| ||||    
T  46362507 aaaaactaacgtataccgctaaatgtgatgctgacatggtattctttagtaaaaagcgaaataatagttcgctatgtcatca 46362588  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 433
Target Start/End: Complemental strand, 36790902 - 36790854
Alignment:
Q  385 gctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtg 433  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36790902 gctcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtg 36790854  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 388 - 452
Target Start/End: Original strand, 49588194 - 49588258
Alignment:
Q  388 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 452  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| | | ||||||| ||||||    
T  49588194 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgcttatcacacggttccgtg 49588258  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 438
Target Start/End: Complemental strand, 20918725 - 20918685
Alignment:
Q  398 tctttagtaaaaggcgaaagaatagttcgctatgtgatcaa 438  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  20918725 tctttagtaaaaggcgaaagaatagtttgctatgtgatcaa 20918685  T

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Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 342 - 455
Target Start/End: Complemental strand, 46446324 - 46446211
Alignment:
Q  342 aagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacac 441  Q
    |||||||||||||||||||||||||||||||   ||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  46446324 aagaagactcttccaaaaactagcgtatgccaaaaatagtaacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcac 46446225  T
Q  442 acggctccgtgctt 455  Q
    | |||||| |||||    
T  46446224 aaggctccatgctt 46446211  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 313 - 452
Target Start/End: Original strand, 21884021 - 21884160
Alignment:
Q  313 attgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggc 412  Q
    |||||||| | |||||||||||||  || || | ||||||| |||||| || |||||||||||    || | || |||||||||||||||||||||||||    
T  21884021 attgaacttatattgcagagccctcggtgaaaaggactctttcaaaaattaacgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggc 21884120  T
Q  413 gaaagaatagttcgctatgtgatcaacacacggctccgtg 452  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  21884121 gaaagaatagttcgctatgtgctcatcacacggctccgtg 21884160  T

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Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 388 - 452
Target Start/End: Complemental strand, 33891656 - 33891592
Alignment:
Q  388 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| ||||||    
T  33891656 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgcttatcacacggttccgtg 33891592  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 451
Target Start/End: Original strand, 27868671 - 27868725
Alignment:
Q  397 ttctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgt 451  Q
    ||||| |||||||| ||||| ||||||| ||||||||||||  ||||||||||||    
T  27868671 ttcttaagtaaaagacgaaacaatagtttgctatgtgatcattacacggctccgt 27868725  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 443
Target Start/End: Complemental strand, 26568441 - 26568347
Alignment:
Q  349 ctcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacac 443  Q
    ||||| |||||| ||||||||||||||    || | || ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||    
T  26568441 ctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcaaaagaatagttcgctatgtgctcatcacac 26568347  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 388 - 457
Target Start/End: Complemental strand, 5900589 - 5900520
Alignment:
Q  388 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgcttta 457  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| | | ||||||| |||||| ||||    
T  5900589 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgcttatcacacggttccgtgattta 5900520  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 425
Target Start/End: Original strand, 43633443 - 43633480
Alignment:
Q  388 cacacggtattctttagtaaaaggcgaaagaatagttc 425  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43633443 cacacggtattctttagtaaaaggcgaaagaatagttc 43633480  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 450
Target Start/End: Original strand, 2341338 - 2341391
Alignment:
Q  397 ttctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccg 450  Q
    |||||| ||||||||||||||||||||||||| |||| |||  ||| |||||||    
T  2341338 ttcttttgtaaaaggcgaaagaatagttcgctttgtgctcactacatggctccg 2341391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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