View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4613_low_2 (Length: 497)

Name: NF4613_low_2
Description: NF4613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4613_low_2
NF4613_low_2
[»] chr8 (38 HSPs)
chr8 (12-491)||(35764591-35765069)
chr8 (145-212)||(2111013-2111080)
chr8 (135-230)||(925970-926065)
chr8 (144-199)||(8407584-8407639)
chr8 (136-211)||(43408663-43408738)
chr8 (145-223)||(28947309-28947387)
chr8 (148-215)||(5111508-5111575)
chr8 (145-216)||(36049541-36049612)
chr8 (155-222)||(37740756-37740823)
chr8 (145-239)||(6078444-6078538)
chr8 (174-248)||(12524570-12524644)
chr8 (153-222)||(29861489-29861558)
chr8 (162-223)||(33583892-33583953)
chr8 (145-216)||(6082399-6082470)
chr8 (160-222)||(12524305-12524367)
chr8 (145-207)||(13544014-13544076)
chr8 (145-207)||(13680397-13680459)
chr8 (156-206)||(17696151-17696201)
chr8 (153-222)||(3346102-3346171)
chr8 (153-210)||(27500572-27500629)
chr8 (147-211)||(38529642-38529706)
chr8 (153-197)||(39746244-39746288)
chr8 (153-216)||(10831616-10831679)
chr8 (144-223)||(25019488-25019567)
chr8 (144-211)||(32202764-32202831)
chr8 (145-199)||(2641828-2641882)
chr8 (145-199)||(9211662-9211716)
chr8 (142-212)||(10861086-10861156)
chr8 (145-210)||(4781257-4781322)
chr8 (76-109)||(6376697-6376730)
chr8 (163-216)||(10113046-10113099)
chr8 (138-191)||(14896445-14896498)
chr8 (145-198)||(25099576-25099629)
chr8 (142-234)||(5964679-5964771)
chr8 (174-238)||(21367065-21367128)
chr8 (153-216)||(30485060-30485123)
chr8 (161-197)||(39746056-39746092)
chr8 (144-216)||(41808251-41808322)
[»] chr3 (48 HSPs)
chr3 (135-254)||(32325969-32326092)
chr3 (135-216)||(9198045-9198126)
chr3 (135-321)||(32109880-32110066)
chr3 (144-248)||(32582592-32582695)
chr3 (153-242)||(9780466-9780555)
chr3 (152-228)||(11042062-11042137)
chr3 (139-210)||(20873068-20873139)
chr3 (154-212)||(3729869-3729927)
chr3 (135-229)||(33674384-33674478)
chr3 (160-217)||(50882420-50882477)
chr3 (135-250)||(33282275-33282390)
chr3 (144-231)||(38053581-38053668)
chr3 (135-212)||(1742799-1742876)
chr3 (154-223)||(32117967-32118036)
chr3 (146-223)||(37083990-37084066)
chr3 (156-213)||(42603846-42603903)
chr3 (154-222)||(35682648-35682716)
chr3 (135-254)||(18084839-18084957)
chr3 (55-109)||(32326130-32326182)
chr3 (156-210)||(22838270-22838324)
chr3 (181-227)||(34778392-34778438)
chr3 (153-207)||(38147969-38148023)
chr3 (145-199)||(42218283-42218337)
chr3 (173-234)||(35696637-35696698)
chr3 (135-223)||(13799879-13799967)
chr3 (144-210)||(36618085-36618148)
chr3 (181-273)||(43822708-43822800)
chr3 (55-117)||(1720154-1720214)
chr3 (154-209)||(22827816-22827871)
chr3 (181-212)||(45021353-45021384)
chr3 (144-203)||(47108978-47109037)
chr3 (145-199)||(20451113-20451167)
chr3 (153-223)||(37334638-37334708)
chr3 (145-199)||(39720083-39720137)
chr3 (170-212)||(44560337-44560379)
chr3 (145-199)||(46972717-46972771)
chr3 (145-199)||(52165505-52165559)
chr3 (145-199)||(52867581-52867635)
chr3 (135-208)||(30956-31029)
chr3 (146-199)||(21707782-21707835)
chr3 (160-209)||(22815516-22815565)
chr3 (155-200)||(31126048-31126093)
chr3 (55-114)||(10366529-10366586)
chr3 (145-189)||(28956245-28956289)
chr3 (157-209)||(32645881-32645933)
chr3 (147-215)||(42933640-42933708)
chr3 (144-208)||(54399569-54399633)
chr3 (154-210)||(54481491-54481547)
[»] scaffold0010 (1 HSPs)
scaffold0010 (135-222)||(166727-166814)
[»] chr1 (43 HSPs)
chr1 (135-210)||(30173402-30173477)
chr1 (144-212)||(3949639-3949707)
chr1 (148-224)||(32348407-32348483)
chr1 (136-229)||(3160978-3161071)
chr1 (144-212)||(1714040-1714108)
chr1 (144-212)||(35058682-35058750)
chr1 (148-248)||(21516474-21516574)
chr1 (136-207)||(23908829-23908900)
chr1 (143-324)||(31117488-31117669)
chr1 (155-276)||(31795289-31795410)
chr1 (158-226)||(5923865-5923933)
chr1 (138-210)||(11337241-11337313)
chr1 (138-210)||(11495260-11495332)
chr1 (144-223)||(28870462-28870541)
chr1 (178-248)||(42747725-42747795)
chr1 (132-216)||(15601976-15602059)
chr1 (156-212)||(32602949-32603005)
chr1 (144-223)||(7460250-7460328)
chr1 (144-229)||(28870864-28870946)
chr1 (153-217)||(35926514-35926580)
chr1 (135-248)||(1415873-1415987)
chr1 (174-248)||(35272453-35272527)
chr1 (155-248)||(20791781-20791874)
chr1 (162-223)||(32359334-32359395)
chr1 (144-229)||(38321958-38322043)
chr1 (172-212)||(11611638-11611678)
chr1 (135-207)||(22593514-22593586)
chr1 (135-254)||(15801277-15801394)
chr1 (143-210)||(40942416-40942483)
chr1 (144-201)||(2859176-2859234)
chr1 (171-217)||(34619167-34619213)
chr1 (144-210)||(40856611-40856677)
chr1 (83-124)||(33644681-33644722)
chr1 (153-253)||(4372761-4372861)
chr1 (145-209)||(36021204-36021267)
chr1 (146-197)||(46087354-46087405)
chr1 (145-199)||(34087664-34087718)
chr1 (145-199)||(49219899-49219953)
chr1 (155-200)||(30418497-30418542)
chr1 (146-199)||(40888500-40888553)
chr1 (145-198)||(42964534-42964587)
chr1 (153-210)||(43024573-43024630)
chr1 (171-211)||(48817377-48817417)
[»] chr5 (39 HSPs)
chr5 (135-252)||(2942057-2942174)
chr5 (146-212)||(28363539-28363605)
chr5 (144-223)||(17902785-17902864)
chr5 (135-212)||(17259595-17259672)
chr5 (135-212)||(41892771-41892848)
chr5 (144-217)||(43315537-43315610)
chr5 (152-211)||(32046915-32046974)
chr5 (144-222)||(31677291-31677369)
chr5 (55-114)||(16869924-16869981)
chr5 (135-211)||(31806595-31806671)
chr5 (144-248)||(34640176-34640280)
chr5 (144-192)||(1621438-1621486)
chr5 (144-223)||(1786868-1786947)
chr5 (153-223)||(6462239-6462308)
chr5 (172-222)||(31812155-31812205)
chr5 (146-199)||(15444122-15444175)
chr5 (162-223)||(17903107-17903168)
chr5 (142-223)||(25832361-25832442)
chr5 (170-210)||(5390454-5390494)
chr5 (145-197)||(9397173-9397225)
chr5 (174-222)||(29225897-29225945)
chr5 (138-209)||(8173396-8173467)
chr5 (144-195)||(22572689-22572740)
chr5 (55-117)||(29226374-29226434)
chr5 (145-199)||(1175441-1175495)
chr5 (55-112)||(1621530-1621585)
chr5 (145-199)||(3670961-3671015)
chr5 (166-216)||(18641257-18641307)
chr5 (149-211)||(22028851-22028912)
chr5 (145-199)||(22653364-22653418)
chr5 (145-199)||(30773594-30773648)
chr5 (145-199)||(35236010-35236064)
chr5 (161-223)||(36909604-36909666)
chr5 (146-199)||(19955730-19955783)
chr5 (165-210)||(32815808-32815853)
chr5 (165-210)||(41662500-41662545)
chr5 (77-109)||(6462364-6462396)
chr5 (147-199)||(7897120-7897172)
chr5 (55-114)||(28363475-28363532)
[»] chr4 (56 HSPs)
chr4 (144-235)||(39276510-39276601)
chr4 (55-206)||(3535209-3535358)
chr4 (156-223)||(52327445-52327512)
chr4 (145-323)||(4149051-4149229)
chr4 (145-223)||(34812665-34812743)
chr4 (135-213)||(44555574-44555652)
chr4 (147-216)||(41173915-41173984)
chr4 (144-224)||(6323840-6323920)
chr4 (135-210)||(42617731-42617805)
chr4 (171-217)||(27611816-27611862)
chr4 (144-210)||(52831589-52831655)
chr4 (145-229)||(39033634-39033718)
chr4 (144-223)||(2103188-2103267)
chr4 (135-210)||(30802416-30802490)
chr4 (155-230)||(31494486-31494561)
chr4 (153-223)||(21501773-21501843)
chr4 (153-211)||(52986362-52986420)
chr4 (177-234)||(30070324-30070381)
chr4 (135-211)||(21191215-21191291)
chr4 (153-209)||(26026815-26026871)
chr4 (154-210)||(41758661-41758717)
chr4 (159-206)||(4120310-4120357)
chr4 (153-212)||(47789372-47789431)
chr4 (154-223)||(466743-466813)
chr4 (145-211)||(5645863-5645929)
chr4 (153-203)||(17425588-17425638)
chr4 (144-210)||(24418112-24418177)
chr4 (144-210)||(37713450-37713516)
chr4 (153-214)||(50570225-50570284)
chr4 (148-210)||(53431404-53431466)
chr4 (134-223)||(1162345-1162434)
chr4 (153-210)||(12637747-12637804)
chr4 (135-211)||(27247475-27247551)
chr4 (183-255)||(49262855-49262926)
chr4 (144-199)||(3919183-3919238)
chr4 (154-209)||(19450420-19450475)
chr4 (155-226)||(33890277-33890348)
chr4 (155-214)||(46765366-46765425)
chr4 (145-199)||(22431462-22431516)
chr4 (153-211)||(22814959-22815017)
chr4 (145-199)||(35580362-35580416)
chr4 (55-107)||(37392968-37393017)
chr4 (144-202)||(50133282-50133340)
chr4 (145-198)||(3930097-3930150)
chr4 (162-223)||(8130283-8130344)
chr4 (135-212)||(17896159-17896236)
chr4 (138-191)||(28162671-28162724)
chr4 (146-199)||(37114707-37114760)
chr4 (153-210)||(37713341-37713398)
chr4 (142-215)||(47138998-47139070)
chr4 (174-242)||(20530447-20530515)
chr4 (55-106)||(20988800-20988849)
chr4 (178-206)||(31235381-31235409)
chr4 (55-110)||(31736124-31736177)
chr4 (145-197)||(49551651-49551703)
chr4 (135-191)||(50812930-50812986)
[»] chr7 (39 HSPs)
chr7 (143-223)||(2525285-2525365)
chr7 (135-212)||(24314164-24314240)
chr7 (144-248)||(28175409-28175513)
chr7 (143-204)||(87160-87221)
chr7 (144-217)||(15050965-15051038)
chr7 (135-254)||(31740571-31740689)
chr7 (144-191)||(44235370-44235417)
chr7 (144-206)||(13438329-13438391)
chr7 (144-242)||(43911074-43911172)
chr7 (153-206)||(3837090-3837143)
chr7 (144-213)||(19683449-19683518)
chr7 (144-213)||(28039854-28039923)
chr7 (144-212)||(19087403-19087471)
chr7 (159-210)||(11991455-11991506)
chr7 (155-209)||(31627636-31627690)
chr7 (185-250)||(21578038-21578103)
chr7 (154-206)||(28543536-28543588)
chr7 (144-195)||(883879-883930)
chr7 (144-195)||(1243208-1243259)
chr7 (135-254)||(7379541-7379659)
chr7 (141-216)||(26769318-26769393)
chr7 (184-223)||(29234852-29234891)
chr7 (144-199)||(45672999-45673054)
chr7 (145-199)||(482407-482461)
chr7 (177-211)||(30339325-30339359)
chr7 (144-198)||(36112678-36112732)
chr7 (55-124)||(42967783-42967850)
chr7 (145-199)||(43135093-43135147)
chr7 (158-212)||(44235316-44235370)
chr7 (145-199)||(44597295-44597349)
chr7 (146-199)||(21375299-21375352)
chr7 (158-195)||(21561524-21561561)
chr7 (146-199)||(24171477-24171530)
chr7 (144-209)||(25129807-25129872)
chr7 (146-199)||(33027535-33027588)
chr7 (159-236)||(36122041-36122118)
chr7 (135-188)||(42967875-42967928)
chr7 (146-199)||(45221509-45221562)
chr7 (148-212)||(45352898-45352962)
[»] chr6 (23 HSPs)
chr6 (142-223)||(29052692-29052773)
chr6 (135-222)||(9749801-9749888)
chr6 (144-209)||(34544421-34544486)
chr6 (153-213)||(3341286-3341346)
chr6 (153-212)||(2748289-2748348)
chr6 (153-211)||(8014427-8014485)
chr6 (146-248)||(13692520-13692621)
chr6 (135-213)||(25142248-25142326)
chr6 (145-210)||(1288436-1288501)
chr6 (163-216)||(2255918-2255971)
chr6 (135-196)||(29490215-29490276)
chr6 (154-210)||(724711-724767)
chr6 (171-213)||(4912509-4912551)
chr6 (144-205)||(9750320-9750382)
chr6 (145-199)||(27720057-27720111)
chr6 (144-210)||(34431392-34431457)
chr6 (143-205)||(9195637-9195700)
chr6 (145-199)||(5301016-5301070)
chr6 (145-199)||(11016298-11016352)
chr6 (145-199)||(28077133-28077187)
chr6 (146-199)||(14227024-14227077)
chr6 (77-109)||(9749924-9749956)
chr6 (144-212)||(32662298-32662366)
[»] chr2 (46 HSPs)
chr2 (138-205)||(27679222-27679289)
chr2 (153-236)||(42139531-42139614)
chr2 (153-206)||(15967970-15968023)
chr2 (153-210)||(30804380-30804437)
chr2 (147-248)||(31063099-31063200)
chr2 (154-216)||(1660221-1660283)
chr2 (133-235)||(13463510-13463612)
chr2 (144-208)||(21721917-21721981)
chr2 (144-216)||(21938036-21938108)
chr2 (147-210)||(4548994-4549057)
chr2 (135-217)||(18491955-18492037)
chr2 (144-222)||(27863867-27863945)
chr2 (135-213)||(28249822-28249900)
chr2 (55-111)||(15804446-15804500)
chr2 (138-238)||(8752600-8752699)
chr2 (183-251)||(15804508-15804576)
chr2 (165-212)||(2346865-2346912)
chr2 (144-238)||(40910051-40910148)
chr2 (144-238)||(44984171-44984268)
chr2 (145-223)||(12238220-12238298)
chr2 (144-190)||(17487871-17487917)
chr2 (153-230)||(33625693-33625771)
chr2 (182-236)||(42034570-42034623)
chr2 (146-223)||(6176501-6176578)
chr2 (55-111)||(42034457-42034511)
chr2 (57-109)||(42139427-42139477)
chr2 (144-229)||(4751783-4751874)
chr2 (135-211)||(6472112-6472188)
chr2 (138-210)||(9613749-9613821)
chr2 (153-212)||(33651167-33651226)
chr2 (145-199)||(7510829-7510883)
chr2 (145-199)||(38843476-38843530)
chr2 (145-199)||(38880187-38880241)
chr2 (145-199)||(44276424-44276478)
chr2 (153-251)||(44810208-44810305)
chr2 (144-197)||(2759507-2759560)
chr2 (146-199)||(9263751-9263804)
chr2 (139-200)||(11235695-11235756)
chr2 (77-114)||(27679148-27679185)
chr2 (171-216)||(36514644-36514689)
chr2 (144-212)||(5946570-5946638)
chr2 (145-217)||(14477590-14477662)
chr2 (154-198)||(18030310-18030354)
chr2 (144-212)||(31854810-31854878)
chr2 (55-110)||(40909954-40910007)
chr2 (55-114)||(44810100-44810157)
[»] scaffold0040 (2 HSPs)
scaffold0040 (144-238)||(49744-49838)
scaffold0040 (55-124)||(49868-49935)
[»] scaffold0004 (2 HSPs)
scaffold0004 (153-221)||(338908-338976)
scaffold0004 (161-211)||(237843-237893)
[»] scaffold0349 (1 HSPs)
scaffold0349 (145-199)||(9479-9533)
[»] scaffold0027 (1 HSPs)
scaffold0027 (144-250)||(8074-8179)
[»] scaffold0009 (1 HSPs)
scaffold0009 (145-199)||(192721-192775)


Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 38)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 12 - 491
Target Start/End: Original strand, 35764591 - 35765069
Alignment:
Q  12 atgagcttatagcttatttttacaaccttataacgnnnnnnnnataagctaattcaagtagtttatatagcttatcattatttatttcaattttaccctt 111  Q
    ||||||||||||||||||||||||| ||| |||||        |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35764591 atgagcttatagcttatttttacaagcttgtaacgttttttt-ataagctaattcaagtaggttatatagcttatcattatttatttcaattttaccctt 35764689  T
Q  112 gtattcataattgnnnnnnnttcaatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 211  Q
    |||||||||||||       || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35764690 gtattcataattgaaaaaaattaaatatattatttttatgtcatttcatatttataaactagttcaaccgctaattttaccaaacactgcaaattcaatc 35764789  T
Q  212 aactagattatcaactattagctataaattagcttatcagctacccactataacctcatccgctaaaaactagtttataagttattcgctattctttact 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35764790 aactagattatcaactattagctataaattagcttatcagctacccactataacctcatccgctaaaaactagtttataagttattcgctattctttact 35764889  T
Q  312 aaacagagcctaaaactaaaacgaagtaagtatatgaaaatctttgctaaatagcctcttagtgctaagcttattgatcaaatttattaaccctgctata 411  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35764890 aaacaaagcctaaaactaaaacgaagtaagtatatgaaaatctttgctaaatagcctcttagtgctaagcttattgatcaaatttattaaccctgctata 35764989  T
Q  412 ataaagctcagcaatcaaccctatcaaacctttaaaccccactgctatgaagcttagcaattgaaactattgatgatgtc 491  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35764990 ataaagctcagcaatcaaccctatcaaacctttaaaccccactgctatgaagcttagcaattgaaactattgataatgtc 35765069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 2111013 - 2111080
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  2111013 ttttatgtcatttcatatttataagctagttcaaccgctaattttaccaaacactgcaaattcaatca 2111080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 925970 - 926065
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactatt 230  Q
    ||||||| ||||||  | |||||||||||||||| || |||||||| || |||||||||||||| ||||||||||||| |||| |||||| |||||    
T  925970 aatatatcatttttgcgtcatttcatatttataagctggttcaaccactcattttaccaaacacaacaaattcaatcagctagcttatcatctatt 926065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 8407584 - 8407639
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  8407584 tttttatgtcatttcatatttataagctagttcaaccgctaattttaccaaacact 8407639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 43408663 - 43408738
Alignment:
Q  136 atatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 211  Q
    |||||||| |||| || |||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||    
T  43408663 atatattaattttttgtcatttcatatttataagctagttcaattactaattttaccaaacactacaaattcaatc 43408738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 28947387 - 28947309
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    ||||||| |||||||||||||||| ||||||||||| | |||||||| ||||||| |||||||||||| |||| |||||    
T  28947387 ttttatgtcatttcatatttataagctagttcaaccacaaattttactaaacactgcaaattcaatcagctagcttatc 28947309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 5111575 - 5111508
Alignment:
Q  148 tatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaact 215  Q
    |||| ||||||||||| |||| ||||||||| |||| |||||||||||||||||||||  ||||||||    
T  5111575 tatgtcatttcatattaataagctagttcaagcgcttattttaccaaacactacaaatcaaatcaact 5111508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 36049612 - 36049541
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 216  Q
    ||||||| ||||||||||||||||  ||||| |||  |||||||||| |||||||| |||||||||||||||    
T  36049612 ttttatgtcatttcatatttataatttagttaaacaactaattttacaaaacactataaattcaatcaacta 36049541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 37740756 - 37740823
Alignment:
Q  155 tttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 222  Q
    ||||||||||| || |||||||||| ||||||| || ||||||||||||||||||||| |||| ||||    
T  37740756 tttcatatttaaaagctagttcaacagctaattgtatcaaacactacaaattcaatcagctagcttat 37740823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 145 - 239
Target Start/End: Complemental strand, 6078538 - 6078444
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaa 239  Q
    ||||||| | ||||||||||||||  || ||| |||| |||||||| |||| ||||||||||||||||||||  ||||||| ||| || ||||||    
T  6078538 ttttatgtcttttcatatttataagttacttccaccgttaattttatcaaaaactacaaattcaatcaactattttatcaattatcagttataaa 6078444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 12524644 - 12524570
Alignment:
Q  174 ttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttat 248  Q
    |||||| |||||||||||||||||||||||||||||||| ||| ||||||   |||| |||||||  ||||||||    
T  12524644 ttcaacggctaattttaccaaacactacaaattcaatcagctaaattatctgttattggctataagctagcttat 12524570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 29861489 - 29861558
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 222  Q
    ||||| ||||||| || ||| ||| || | ||||||||||||||||||||||||||||||||||| ||||    
T  29861489 catttgatatttaaaagctaattctacaggtaattttaccaaacactacaaattcaatcaactagcttat 29861558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 33583953 - 33583892
Alignment:
Q  162 tttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    ||||||| |||||||| | | |||||||||||||| |||||||||||||||||||| |||||    
T  33583953 tttataagctagttcagctgttaattttaccaaacgctacaaattcaatcaactagcttatc 33583892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 6082470 - 6082399
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 216  Q
    ||||||| | ||||||||||||||  || ||| |||| |||||||| |||| ||||||||||||||||||||    
T  6082470 ttttatgtcttttcatatttataagttacttccaccgttaattttatcaaaaactacaaattcaatcaacta 6082399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 12524367 - 12524305
Alignment:
Q  160 tatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 222  Q
    ||||||||| ||||||||||  ||||||||| |||| |||||||| |||||||||||| ||||    
T  12524367 tatttataagctagttcaactcctaattttatcaaatactacaaactcaatcaactagcttat 12524305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 13544076 - 13544014
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattc 207  Q
    ||||||| ||||| | |||||||||| | |||||||||||||||||| ||||| |||||||||    
T  13544076 ttttatgtcattttaaatttataaacaacttcaaccgctaattttactaaacattacaaattc 13544014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 13680397 - 13680459
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattc 207  Q
    ||||||| ||||| | |||||||||| | |||||||||||||||||| ||||| |||||||||    
T  13680397 ttttatgtcattttaaatttataaacaacttcaaccgctaattttactaaacattacaaattc 13680459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 17696151 - 17696201
Alignment:
Q  156 ttcatatttataaactagttcaaccgctaattttaccaaacactacaaatt 206  Q
    ||||||||||||||| ||||||||| |||||||||  ||||||||||||||    
T  17696151 ttcatatttataaaccagttcaaccactaattttattaaacactacaaatt 17696201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 3346171 - 3346102
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 222  Q
    ||||||||||||||||  || | |||||| |||||||| || ||| ||||||||||||||||||| ||||    
T  3346171 catttcatatttataagttattccaaccgttaattttatcatacattacaaattcaatcaactagcttat 3346102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 27500629 - 27500572
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    ||||||| |||||||||||||||||||| ||||||||| || ||| || |||||||||    
T  27500629 catttcaaatttataaactagttcaaccactaattttatcatacattataaattcaat 27500572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 38529706 - 38529642
Alignment:
Q  147 ttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 211  Q
    ||||| || ||| |||||||||  ||||||||  ||||||| |||||||||||||||||||||||    
T  38529706 ttatgtcaattcttatttataaggtagttcaattgctaattctaccaaacactacaaattcaatc 38529642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 39746288 - 39746244
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaaca 197  Q
    ||||| |||||||| |||||||| |||||||||||||||||||||    
T  39746288 cattttatatttatcaactagttgaaccgctaattttaccaaaca 39746244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 10831679 - 10831616
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 216  Q
    |||||||| ||||||||||| || ||| | ||||||||  ||||||||| ||||||||||||||    
T  10831679 catttcatttttataaactattttaactgttaattttaataaacactacgaattcaatcaacta 10831616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 25019567 - 25019488
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    |||||||| ||||||||| ||| ||   | || ||||||||||||||||||||||||| |||||||  |||||| |||||    
T  25019567 tttttatgtcatttcataattacaagtgactttaaccgctaattttaccaaacactacgaattcaacaaactagtttatc 25019488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 32202764 - 32202831
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 211  Q
    |||||||| ||||||||||| ||  ||||||| |||  ||||||||| ||||| ||||||||||||||    
T  32202764 tttttatgtcatttcatattcatggactagtttaactactaattttatcaaacgctacaaattcaatc 32202831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 2641882 - 2641828
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  2641882 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 2641828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 9211662 - 9211716
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  9211662 ttttatgtcattttacttttataagctagttgaaccgctaattttaccaaacact 9211716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 10861086 - 10861156
Alignment:
Q  142 tatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    ||||| |||| |||||||||||||||| ||||||||   | | |||||| |||||| ||||||||||||||    
T  10861086 tatttatatgtcatttcatatttataagctagttcagttgttgattttatcaaacattacaaattcaatca 10861156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 4781257 - 4781322
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    ||||||| |||||||||||||||   |||||||||| |||||||||| ||| || | |||||||||    
T  4781257 ttttatgtcatttcatatttatatgatagttcaaccactaattttactaaatacaaaaaattcaat 4781322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 6376730 - 6376697
Alignment:
Q  76 atatagcttatcattatttatttcaattttaccc 109  Q
    ||||||||||||||||||||| ||||||||||||    
T  6376730 atatagcttatcattatttatatcaattttaccc 6376697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 10113099 - 10113046
Alignment:
Q  163 ttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 216  Q
    |||||||||||||||||| ||||||||| |||| |||| | | |||||||||||    
T  10113099 ttataaactagttcaaccactaattttatcaaatactatagaatcaatcaacta 10113046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 14896445 - 14896498
Alignment:
Q  138 atattatttttatgccatttcatatttataaactagttcaaccgctaattttac 191  Q
    ||||| ||||||||  ||||||||||||||| ||||||||||  ||||||||||    
T  14896445 atattttttttatgtgatttcatatttataagctagttcaacaactaattttac 14896498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 25099629 - 25099576
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacac 198  Q
    ||||||| ||||| |||||||| | ||| |||||| ||||||||||||||||||    
T  25099629 ttttatgtcattttatatttatcagctacttcaacagctaattttaccaaacac 25099576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 234
Target Start/End: Complemental strand, 5964771 - 5964679
Alignment:
Q  142 tatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagct 234  Q
    |||||||||| ||||| |||||||| |  || |||||  | |||||||||||||||||  || ||||||||||||| || ||| |||| ||||    
T  5964771 tatttttatgtcattttatatttatcagttacttcaaaagttaattttaccaaacactttaatttcaatcaactagtttttcagctataagct 5964679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 21367128 - 21367065
Alignment:
Q  174 ttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataa 238  Q
    ||||| ||||||||||||||||||||||||| |||||||  ||| ||||| | ||| ||||||||    
T  21367128 ttcaatcgctaattttaccaaacactacaaa-tcaatcagttagcttatccattatcagctataa 21367065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 30485123 - 30485060
Alignment:
Q  153 catttcatattt-ataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 216  Q
    |||||||||||| ||||  ||||||||||| ||||||||| |||| | |||||||||||||||||    
T  30485123 catttcatattttataagttagttcaaccgttaattttactaaac-caacaaattcaatcaacta 30485060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 39746092 - 39746056
Alignment:
Q  161 atttataaactagttcaaccgctaattttaccaaaca 197  Q
    |||||| |||||||| |||||||||||||||||||||    
T  39746092 atttatcaactagttgaaccgctaattttaccaaaca 39746056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 41808322 - 41808251
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 216  Q
    |||||||  |||||||||||||||||||||| ||| | || |||||   |||||||| |||||||||||||||    
T  41808322 tttttatatcatttcatatttataaactagtacaatcact-attttttaaaacactataaattcaatcaacta 41808251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 48)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 32326092 - 32325969
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaa----ctagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactatt 230  Q
    ||||||| ||||||||| ||||||||| |||||||    ||||||||||  |||||||||||||||||||||||||| ||||||||| ||||| ||||||    
T  32326092 aatatatcatttttatgtcatttcataattataaataagctagttcaactactaattttaccaaacactacaaattccatcaactagcttatccactatt 32325993  T
Q  231 agctataaattagcttatcagcta 254  Q
    ||||||||  ||||||||||||||    
T  32325992 agctataagctagcttatcagcta 32325969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 9198126 - 9198045
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 216  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||  ||||||||||||||||||||| |||||||||||||    
T  9198126 aatatattatttttatgtcatttcatatttacaaactagttcaacaactaattttaccaaacactacagattcaatcaacta 9198045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 135 - 321
Target Start/End: Original strand, 32109880 - 32110066
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagct 234  Q
    |||||||  |||||||| |||||||||| ||||| |||||| | || |||||||||||||||||||  |||||||||| ||   |||||  |||| | ||    
T  32109880 aatatatcttttttatgtcatttcatatatataagctagttaagccactaattttaccaaacactatgaattcaatcagctgatttatcctctatcatct 32109979  T
Q  235 ataaattagcttatcagctacccactataacctcatccgctaaaaactagtttataagttattcgctattctttactaaacagagcc 321  Q
    ||||  |||||||| ||||| || |||||| ||| ||||||| || |||| |||| | |||||||||||| ||||  ||||||||||    
T  32109980 ataagctagcttattagctatcctctataagctcgtccgctataacctagcttatcatttattcgctattttttatcaaacagagcc 32110066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 144 - 248
Target Start/End: Original strand, 32582592 - 32582695
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattag 243  Q
    |||||||| ||||||||| |||||| ||| |||| | ||||||||||||||||||||||||||||||||||||| |||||| |||| |||| |||  |||    
T  32582592 tttttatgtcatttcatacttataagctacttca-cggctaattttaccaaacactacaaattcaatcaactaggttatcagctatcagctctaaggtag 32582690  T
Q  244 cttat 248  Q
    |||||    
T  32582691 cttat 32582695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 9780555 - 9780466
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaatta 242  Q
    |||||| |||||||||||||||||||||| ||||||||||||||| ||||||| ||||||  ||  ||||||||||| || || ||||||    
T  9780555 catttcgtatttataaactagttcaaccgttaattttaccaaacattacaaatccaatcagttaacttatcaactatcaggtaaaaatta 9780466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 11042062 - 11042137
Alignment:
Q  152 ccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaacta 228  Q
    |||||||||||||||||  |||||||||| ||||||||||||||||| |||||||||||||| ||  ||||||||||    
T  11042062 ccatttcatatttataagttagttcaaccactaattttaccaaacac-acaaattcaatcaattaacttatcaacta 11042137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 20873139 - 20873068
Alignment:
Q  139 tattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    ||||||||||||| |||||||||| |||||  || |||||||||| |||||||||||||||| |||||||||    
T  20873139 tattatttttatgtcatttcatatgtataagttacttcaaccgctgattttaccaaacactaaaaattcaat 20873068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 3729869 - 3729927
Alignment:
Q  154 atttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    ||||||||||||||| | |||||||||||||||  ||||||||||||||||||||||||    
T  3729869 atttcatatttataagccagttcaaccgctaatcataccaaacactacaaattcaatca 3729927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 33674478 - 33674384
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactat 229  Q
    ||||||| ||||| | | || ||||||||||| | |||||||||| ||| |||||| ||||||||||||||||||| | |||| |||||||||||    
T  33674478 aatatatcattttcacgtcacttcatatttatgagctagttcaactgctgattttagcaaacactacaaattcaatgagctagcttatcaactat 33674384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 50882420 - 50882477
Alignment:
Q  160 tatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactag 217  Q
    ||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||    
T  50882420 tatttataagctagttcagccgctaattttaccaatcactacaaattaaatcaactag 50882477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 250
Target Start/End: Complemental strand, 33282390 - 33282275
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagct 234  Q
    ||||||| | ||||||| |||||||||||| |||  || |||||| |||||||||||||||   || |||||||||||||||  |||||  ||||||| |    
T  33282390 aatatatcacttttatgtcatttcatatttgtaacttaattcaacagctaattttaccaaatcatataaattcaatcaactaacttatctgctattagat 33282291  T
Q  235 ataaattagcttatca 250  Q
    |||| |||| ||||||    
T  33282290 ataagttagtttatca 33282275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 38053581 - 38053668
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactatta 231  Q
    |||||||| |||||||||||||||| |||  ||||| ||||||||||| ||||||| || |||| || | |||| |||||||||||||    
T  38053581 tttttatgtcatttcatatttataagctatctcaactgctaattttactaaacactccatattcgattagctagcttatcaactatta 38053668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 1742799 - 1742876
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    ||||||| ||||||||  ||||||||||||||||| |||||||||| | ||||| | |||||| |||||||| |||||    
T  1742799 aatatatgatttttatatcatttcatatttataaattagttcaaccaccaatttcatcaaacattacaaatttaatca 1742876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 32117967 - 32118036
Alignment:
Q  154 atttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    ||||||||||||||| |||||||| | |||||| ||||||||||||| ||||||| ||| |||| |||||    
T  32117967 atttcatatttataagctagttcagctgctaatcttaccaaacactaaaaattcagtcagctagcttatc 32118036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 37083990 - 37084066
Alignment:
Q  146 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    |||||| ||||||||| |||||||||||||||||| |||||  || ||||||||| ||||||||||| |||| |||||    
T  37083990 tttatgtcatttcatacttataaactagttcaaccactaatgctatcaaacacta-aaattcaatcatctagcttatc 37084066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 42603903 - 42603846
Alignment:
Q  156 ttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaa 213  Q
    ||||||||| ||| ||| |||||||||||||||||  |||||||||||||||||||||    
T  42603903 ttcatatttttaatctacttcaaccgctaattttattaaacactacaaattcaatcaa 42603846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 35682648 - 35682716
Alignment:
Q  154 atttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 222  Q
    ||||||||||||||| ||| || || | ||| |||||||||||||||||||||||||||| ||| ||||    
T  35682648 atttcatatttataagctaattaaatctctagttttaccaaacactacaaattcaatcaattagcttat 35682716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 18084957 - 18084839
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagct 234  Q
    ||||||| | ||||||| ||||| ||||||||||  || ||||| || ||||||||||||||||| |||||||||||| |||  |||||  |||| | ||    
T  18084957 aatatatcagttttatgtcattttatatttataagttaattcaatcg-taattttaccaaacactgcaaattcaatcagctaacttatccgctatcatct 18084859  T
Q  235 ataaattagcttatcagcta 254  Q
    ||||  ||| ||||||||||    
T  18084858 ataagctagtttatcagcta 18084839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 32326182 - 32326130
Alignment:
Q  55 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttaccc 109  Q
    |||||||||||||||||| |||||  |||||||||||||||| ||||||||||||    
T  32326182 ataagctaattcaagtagcttata--gcttatcattatttatatcaattttaccc 32326130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 22838270 - 22838324
Alignment:
Q  156 ttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    |||||||||||||  | |||||||||||||||||| |||| ||||||||||||||    
T  22838270 ttcatatttataagtttgttcaaccgctaattttatcaaagactacaaattcaat 22838324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 34778392 - 34778438
Alignment:
Q  181 gctaattttaccaaacactacaaattcaatcaactagattatcaact 227  Q
    |||||||||| ||||||||||||||||| |||||||| |||||||||    
T  34778392 gctaattttatcaaacactacaaattcattcaactagcttatcaact 34778438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 38147969 - 38148023
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattc 207  Q
    ||||||||||||||||  |||||||| |||||||||||| ||| |||||||||||    
T  38147969 catttcatatttataatttagttcaatcgctaattttactaaatactacaaattc 38148023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 42218283 - 42218337
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| | |||||| | ||||||||||||||||||||||||||||||    
T  42218283 ttttatgtcattttacatttatcagctagttcaaccgctaattttaccaaacact 42218337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 35696637 - 35696698
Alignment:
Q  173 gttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagct 234  Q
    |||||| | ||||||||||||||||||||||||||||||  |||| ||||| ||||| ||||    
T  35696637 gttcaatcactaattttaccaaacactacaaattcaatctgctagcttatccactataagct 35696698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 13799967 - 13799879
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    |||||| | ||||||||| |||||  ||||||||  || ||||||||||||||||| ||| ||||  ||||||||||| ||| ||||||    
T  13799967 aatatactttttttatgctatttcgaatttataaggtacttcaaccgctaattttatcaagcactgtaaattcaatcagctaaattatc 13799879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 36618085 - 36618148
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    |||||||| |||||| |||| |||| ||||||||   |||||||||||| |||||||||||||||||    
T  36618085 tttttatgtcatttcgtattgataagctagttca---gctaattttaccgaacactacaaattcaat 36618148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 43822708 - 43822800
Alignment:
Q  181 gctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttatcagctacccactataacctcatccg 273  Q
    |||| |||||||||||||| |||||||||| | |||| |||||  |||| ||||||||  |||||||||||  | || |||||| ||||||||    
T  43822708 gctagttttaccaaacacttcaaattcaattagctagtttatccgctatcagctataagctagcttatcagtcatccgctataagctcatccg 43822800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 1720154 - 1720214
Alignment:
Q  55 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttacccttgtattc 117  Q
    ||||||||||||||||||||  |||| ||||||||||||||| || || |||||||| |||||    
T  1720154 ataagctaattcaagtagtt--tataacttatcattatttatctcgatattacccttatattc 1720214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 22827816 - 22827871
Alignment:
Q  154 atttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaa 209  Q
    |||||||||||||||  ||||||||||||||||||||   || |||||||||||||    
T  22827816 atttcatatttataagttagttcaaccgctaattttatacaagactacaaattcaa 22827871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 212
Target Start/End: Complemental strand, 45021384 - 45021353
Alignment:
Q  181 gctaattttaccaaacactacaaattcaatca 212  Q
    ||||||||||||||||||||||||||||||||    
T  45021384 gctaattttaccaaacactacaaattcaatca 45021353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 47108978 - 47109037
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaa 203  Q
    |||||||| |||||||||||||| | |||||| ||||| ||||||| |||||||| ||||    
T  47108978 tttttatgtcatttcatatttattatctagtttaaccgttaatttttccaaacacaacaa 47109037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 20451113 - 20451167
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| | |||||| | |||||| |||||||||||||||||||||||    
T  20451113 ttttatgtcattttacatttatcagctagttgaaccgctaattttaccaaacact 20451167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 37334638 - 37334708
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    |||||||||||||||  ||| || |  ||||||||||| |||||||| || |||||||||||||| |||||    
T  37334638 catttcatatttatatgctactttagtcgctaattttatcaaacactgcatattcaatcaactagcttatc 37334708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 39720083 - 39720137
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| |||||||| | |||||| |||||||| ||||||||||||||    
T  39720083 ttttatgtcattttatatttatcagctagttgaaccgctagttttaccaaacact 39720137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 44560337 - 44560379
Alignment:
Q  170 ctagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    ||||||||||| ||||||| ||||||||||||| |||||||||    
T  44560337 ctagttcaaccactaatttgaccaaacactacagattcaatca 44560379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 46972717 - 46972771
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  46972717 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 46972771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 52165559 - 52165505
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  52165559 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 52165505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 52867635 - 52867581
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| | |||||| | |||||| |||||||||||||||||||||||    
T  52867635 ttttatggcattttacatttatcagctagttgaaccgctaattttaccaaacact 52867581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 30956 - 31029
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattca 208  Q
    ||||||| ||||||||| ||||||||||||  ||| || || |||| |||||||||  ||| ||||||||||||    
T  30956 aatatatcatttttatgtcatttcatattttaaaattaatttaaccactaattttattaaatactacaaattca 31029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 21707782 - 21707835
Alignment:
Q  146 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    |||||| ||||| | |||||| |||||||| |||||||| ||||||||||||||    
T  21707782 tttatgtcattttacatttatcaactagttgaaccgctatttttaccaaacact 21707835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 22815516 - 22815565
Alignment:
Q  160 tatttataaactagttcaaccgctaattttaccaaacactacaaattcaa 209  Q
    |||||||||  |||||||||||||||||||| |||| | |||||||||||    
T  22815516 tatttataatttagttcaaccgctaattttatcaaagattacaaattcaa 22815565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 31126048 - 31126093
Alignment:
Q  155 tttcatatttataaactagttcaaccgctaattttaccaaacacta 200  Q
    |||||||||||||||||| ||||||| |||||||||| ||| ||||    
T  31126048 tttcatatttataaactacttcaacctctaattttactaaatacta 31126093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 10366586 - 10366529
Alignment:
Q  55 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttacccttgta 114  Q
    |||||||||||||||| |||||||  ||||||||||  | |||||||| |||||||||||    
T  10366586 ataagctaattcaagtggtttata--gcttatcatttatcatttcaatattacccttgta 10366529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 28956245 - 28956289
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaatttt 189  Q
    ||||||| ||||||||||||||||| |||||||| || |||||||    
T  28956245 ttttatgtcatttcatatttataaattagttcaatcgttaatttt 28956289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 32645881 - 32645933
Alignment:
Q  157 tcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaa 209  Q
    |||||| ||||| ||| ||||||| |||| ||||||||||| |||||||||||    
T  32645881 tcatatatataagctacttcaaccactaaatttaccaaacattacaaattcaa 32645933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 42933708 - 42933640
Alignment:
Q  147 ttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaact 215  Q
    ||||| ||||| |||||||||||||| || ||  | |||||||| ||||||| |||||||||| |||||    
T  42933708 ttatgtcatttaatatttataaactaatttaattgttaattttatcaaacacaacaaattcaagcaact 42933640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 54399569 - 54399633
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattca 208  Q
    |||||||| ||||| |||||||||| ||| |||||| | | ||| || |||||||||||||||||    
T  54399569 tttttatgtcatttgatatttataagctaattcaactgttgattctatcaaacactacaaattca 54399633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 54481547 - 54481491
Alignment:
Q  154 atttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    |||||||||||||||  ||| ||||| | |||||||| ||||||||| |||||||||    
T  54481547 atttcatatttataagttagctcaacagataattttatcaaacactataaattcaat 54481491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 166727 - 166814
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 222  Q
    ||||||| |||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  166727 aatatatcatttctatgtcatttcatatttataagctagttcaaccgctaattttaccaaacactacaaattcaatcagctagcttat 166814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 30173477 - 30173402
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||    
T  30173477 aatatattatttttatgtcatttcatatttataaactacttcaaccgctaattttaacaaacattacaaattcaat 30173402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 3949707 - 3949639
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  3949707 tttttatgtcatttcatatttataaattagttcaaacgctaattttaccaaacactacaaattcaatca 3949639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 32348407 - 32348483
Alignment:
Q  148 tatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatca 224  Q
    |||| ||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32348407 tatgtcatttcaaatttataagctagctcaaccgctaattttaccaaacactacaaattcaatcaactagcttatca 32348483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 3160978 - 3161071
Alignment:
Q  136 atatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactat 229  Q
    |||||||  ||||||| |||||||||||||||  ||||||||| || |||||||||||||||||||||||||||||| |||| |||| ||||||    
T  3160978 atatatttattttatgtcatttcatatttatatgctagttcaaacgttaattttaccaaacactacaaattcaatcagctagcttattaactat 3161071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 1714108 - 1714040
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    |||||||| |||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||    
T  1714108 tttttatgtcatttcatatttataaactacttcaacggttaattttaccaaacactacaaattcaatca 1714040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 35058682 - 35058750
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    |||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||    
T  35058682 tttttatgtcatttcatatttataaggtagttcaaccgctaattttaccaaacactacaaatttaatca 35058750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 21516574 - 21516474
Alignment:
Q  148 tatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagctta 247  Q
    |||| ||||||||||||| || ||| ||||||| ||||||||||||||||| ||||||||||||| |||| ||||| ||||| | ||||||  |||||||    
T  21516574 tatgtcatttcatatttaaaagctatttcaaccactaattttaccaaacacaacaaattcaatcagctagcttatccactatcatctataagctagctta 21516475  T
Q  248 t 248  Q
    |    
T  21516474 t 21516474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 23908900 - 23908829
Alignment:
Q  136 atatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattc 207  Q
    |||||| ||||||||| |||||||||||||||| ||||||||||| ||||||| |||||||| |||||||||    
T  23908900 atatatcatttttatgtcatttcatatttataagctagttcaaccactaatttcaccaaacattacaaattc 23908829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 143 - 324
Target Start/End: Complemental strand, 31117669 - 31117488
Alignment:
Q  143 atttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaatta 242  Q
    |||||| || |||||||||||||||  ||| ||||| ||||||||||| ||||||||||||||||||||| |||| ||||   || | | ||||||  ||    
T  31117669 atttttttgtcatttcatatttatatgctatttcaatcgctaattttatcaaacactacaaattcaatcagctagcttatttgctctcaactataagcta 31117570  T
Q  243 gcttatcagctacccactataacctcatccgctaaaaactagtttataagttattcgctattctttactaaacagagcctaa 324  Q
    |||||| ||  | | ||||||| |||||| |||| || |||  |||| |||||| |||| ||||||||  |||| |||||||    
T  31117569 gcttataagtcatcaactataagctcatctgctacaagctaacttatcagttatccgctgttctttaccgaacaaagcctaa 31117488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 155 - 276
Target Start/End: Complemental strand, 31795410 - 31795289
Alignment:
Q  155 tttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttatcagcta 254  Q
    |||||||||||||| |||||||||||| || ||||||||||||||||||||||||| |   || |||||  |||| |||| |||  |||||||||||||     
T  31795410 tttcatatttataagctagttcaaccgttagttttaccaaacactacaaattcaattagtcagtttatccgctatcagctttaagctagcttatcagctc 31795311  T
Q  255 cccactataacctcatccgcta 276  Q
     ||||| |||  ||||||||||    
T  31795310 tccactctaagttcatccgcta 31795289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 5923865 - 5923933
Alignment:
Q  158 catatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaac 226  Q
    ||||||||||| |||||||||||  |||||||||||||||||| ||||||||||| |||| ||||||||    
T  5923865 catatttataagctagttcaaccattaattttaccaaacactaaaaattcaatcagctagcttatcaac 5923933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 11337313 - 11337241
Alignment:
Q  138 atattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    |||| ||||||||| |||||| |||| ||||||||||||||| || |||||||||||||||| ||||||||||    
T  11337313 atatcatttttatgtcatttcgtattaataaactagttcaactgcaaattttaccaaacactgcaaattcaat 11337241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 11495332 - 11495260
Alignment:
Q  138 atattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    |||| ||||||||| |||||| |||| ||||||||||||||| || |||||||||||||||| ||||||||||    
T  11495332 atatcatttttatgtcatttcgtattaataaactagttcaactgcaaattttaccaaacactgcaaattcaat 11495260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 28870541 - 28870462
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    ||||||||  ||||||| ||||||| |||||||||| | |||||||||||||||||| ||||||||| |||||| |||||    
T  28870541 tttttatgtaatttcatttttataagctagttcaactgttaattttaccaaacactaaaaattcaataaactagcttatc 28870462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 42747725 - 42747795
Alignment:
Q  178 accgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttat 248  Q
    ||||| ||||||||||||||||||||||||||| |||||| |||||  |||| ||||||||| ||||||||    
T  42747725 accgcaaattttaccaaacactacaaattcaattaactagcttatcctctatcagctataaactagcttat 42747795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 15602059 - 15601976
Alignment:
Q  132 ttcaatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 216  Q
    ||||||| || |||||| || ||||||||||| |||||||||||||||| |||||||||  |||| ||| |||||||||||||||    
T  15602059 ttcaataaatcatttttgtgtcatttcatatt-ataaactagttcaaccactaattttaataaacgctataaattcaatcaacta 15601976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 32602949 - 32603005
Alignment:
Q  156 ttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    ||||||||||||| ||| ||||||| |||||||||| ||||||||||||||||||||    
T  32602949 ttcatatttataagctacttcaaccactaattttactaaacactacaaattcaatca 32603005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 7460250 - 7460328
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    |||| ||| |||||||||| ||||| |||||| ||||||||| ||||| |||||||||||||||||||| |||| |||||    
T  7460250 ttttcatgtcatttcatatatataagctagtttaaccgctaagtttac-aaacactacaaattcaatcatctagcttatc 7460328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 229
Target Start/End: Original strand, 28870864 - 28870946
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactat 229  Q
    |||||||| |||||| |||||||   |||||||||  |||||||||||||||||||||||| |||||  ||||| |||||||||||    
T  28870864 tttttatgtcatttcgtatttat---ctagttcaatagctaattttaccaaacactacaaaatcaattcactagcttatcaactat 28870946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 35926580 - 35926514
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacac--tacaaattcaatcaactag 217  Q
    ||||||||| |||||| ||||||||||| |||||||||||||||||  |||||||||||||| ||||    
T  35926580 catttcatacttataagctagttcaaccactaattttaccaaacactgtacaaattcaatcagctag 35926514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 1415873 - 1415987
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaatttta-ccaaacactacaaattcaatcaactagattatcaactattagc 233  Q
    |||||||  |||||||| ||||||| |||||||| |||||| |||||||||||||| | |||||||||||| | ||||| |||| | |||  |||| |||    
T  1415873 aatatatcttttttatgtcatttcacatttataagctagtttaaccgctaattttatcaaaacactacaaactaaatcacctagctcatcttctatcagc 1415972  T
Q  234 tataaattagcttat 248  Q
    |||||  ||||||||    
T  1415973 tataagctagcttat 1415987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 35272527 - 35272453
Alignment:
Q  174 ttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttat 248  Q
    |||||||| ||||||||| |||||||||||||||||||| |||| |||||   ||||||||||||  ||||||||    
T  35272527 ttcaaccgataattttactaaacactacaaattcaatcagctagcttatccgttattagctataagctagcttat 35272453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 20791874 - 20791781
Alignment:
Q  155 tttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttat 248  Q
    ||||| |||||||| ||| ||||| ||| ||||||||||||||||||||||||| | | |||| ||| | ||||| ||||||||  ||||||||    
T  20791874 tttcacatttataagctacttcaatcgccaattttaccaaacactacaaattcagttagctagcttacccactatgagctataatctagcttat 20791781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 32359334 - 32359395
Alignment:
Q  162 tttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    ||||||| ||| ||||| |||||||||||||||||| |||||||||||||| |||| |||||    
T  32359334 tttataagctacttcaaacgctaattttaccaaacattacaaattcaatcagctagtttatc 32359395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 38322043 - 38321958
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactat 229  Q
    |||||||| | |||||||||||| |  ||| ||  ||| ||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  38322043 tttttatgtcttttcatatttatcagttaggtcggccgttaattttaccaaacactacaaattcaaacaactagtttatccactat 38321958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 11611678 - 11611638
Alignment:
Q  172 agttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  11611678 agttcaaccgctaattttaccaaacacttcaaattcaatca 11611638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 22593586 - 22593514
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattc 207  Q
    |||||||  |||||||| |||||||||||||||| |||||  ||| |||||||||| ||||||||| ||||||    
T  22593586 aatatatattttttatgtcatttcatatttataagctagtcgaactgctaattttatcaaacactataaattc 22593514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 15801277 - 15801394
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagct 234  Q
    ||||||| | ||||||| ||||||||||||||||  || ||||| || ||||||||||||||| | |||||||||||| |||  ||||| ||||| | ||    
T  15801277 aatatatcagttttatgtcatttcatatttataagtta-ttcaatcg-taattttaccaaacattgcaaattcaatcagctaacttatccactatcatct 15801374  T
Q  235 ataaattagcttatcagcta 254  Q
    ||||  ||| ||||||||||    
T  15801375 ataagctagtttatcagcta 15801394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 40942416 - 40942483
Alignment:
Q  143 atttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    ||||||||| ||||| |||||| | |  ||||||||||||||||||||||||||| | ||||||||||    
T  40942416 atttttatgtcattttatatttgtcagttagttcaaccgctaattttaccaaacaattcaaattcaat 40942483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 2859234 - 2859176
Alignment:
Q  144 tttttatgccatttcatatttataaa-ctagttcaaccgctaattttaccaaacactac 201  Q
    ||||||||||||||||||||||||||  |||||||||| || |||| ||||||||||||    
T  2859234 tttttatgccatttcatatttataaagttagttcaaccactgatttcaccaaacactac 2859176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 34619213 - 34619167
Alignment:
Q  171 tagttcaaccgctaattttaccaaacactacaaattcaatcaactag 217  Q
    ||||||||| | |||||||||||||| ||||||||||||||||||||    
T  34619213 tagttcaactgttaattttaccaaaccctacaaattcaatcaactag 34619167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 40856677 - 40856611
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    |||||||  ||||||||||||||||  |||||||||||||||||||| ||||||  | |||||||||    
T  40856677 tttttatatcatttcatatttataagttagttcaaccgctaattttatcaaacatcataaattcaat 40856611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 33644722 - 33644681
Alignment:
Q  83 ttatcattatttatttcaattttacccttgtattcataattg 124  Q
    ||||||| ||||||||||||||||||||||||||| ||||||    
T  33644722 ttatcatcatttatttcaattttacccttgtattcttaattg 33644681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 253
Target Start/End: Complemental strand, 4372861 - 4372761
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttatcagc 252  Q
    ||||||||||||||||  |||||||||||||||| |||  ||||||| ||| |||||| || ||| ||||  ||||| |||| |||  |||||||| |||    
T  4372861 catttcatatttataagttagttcaaccgctaatcttagaaaacactccaagttcaataaattagtttatttactatcagctttaagctagcttataagc 4372762  T
Q  253 t 253  Q
    |    
T  4372761 t 4372761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 36021204 - 36021267
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaa 209  Q
    ||||||| |||||| ||||||||| |||| ||| |||||||| ||||| ||||||||||||||||    
T  36021204 ttttatgtcatttcgtatttataagctagctca-ccgctaatgttaccgaacactacaaattcaa 36021267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 46087405 - 46087354
Alignment:
Q  146 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaaca 197  Q
    |||||| ||||| |||||| | |||||||| |||||||||||||||||||||    
T  46087405 tttatgtcattttatatttctcaactagttgaaccgctaattttaccaaaca 46087354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 34087664 - 34087718
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| | |||||| | |||||| |||||||||||||||||||||||    
T  34087664 ttttatgacattttacatttatcagctagttgaaccgctaattttaccaaacact 34087718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 49219953 - 49219899
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| | |||||| |||||||| |||||||| ||||||||||||||    
T  49219953 ttttatgtcattttacatttatcaactagttgaaccgctatttttaccaaacact 49219899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 30418497 - 30418542
Alignment:
Q  155 tttcatatttataaactagttcaaccgctaattttaccaaacacta 200  Q
    |||||| ||||||| ||||||||||| ||||||||||| |||||||    
T  30418497 tttcatgtttataagctagttcaaccactaattttacctaacacta 30418542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 40888500 - 40888553
Alignment:
Q  146 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    |||||| ||||| | |||||||| |||||| |||||||| ||||||||||||||    
T  40888500 tttatgtcattttacatttataagctagttgaaccgctatttttaccaaacact 40888553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 42964534 - 42964587
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacac 198  Q
    ||||||| ||||| | |||||| |||||||| ||||| ||||||||||||||||    
T  42964534 ttttatgtcattttacatttatcaactagttgaaccgttaattttaccaaacac 42964587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 43024573 - 43024630
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    ||||| |||||||| || |||| |||||| ||||||||  ||||||||||||||||||    
T  43024573 catttaatatttattaaatagtacaaccgttaattttattaaacactacaaattcaat 43024630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 48817377 - 48817417
Alignment:
Q  171 tagttcaaccgctaattttaccaaacactacaaattcaatc 211  Q
    ||||||||| |||||||||||  ||||||||||||||||||    
T  48817377 tagttcaactgctaattttacataacactacaaattcaatc 48817417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 135 - 252
Target Start/End: Original strand, 2942057 - 2942174
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagct 234  Q
    ||||||| | ||||||| ||||| ||||||||||  |||||||||| ||||||||||||||| |||||||||||| ||||||| |||||  |||| ||||    
T  2942057 aatatatcacttttatgtcattttatatttataagttagttcaaccactaattttaccaaaccctacaaattcaaccaactagcttatccgctatcagct 2942156  T
Q  235 ataaattagcttatcagc 252  Q
    ||||  ||||||||||||    
T  2942157 ataagctagcttatcagc 2942174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 28363539 - 28363605
Alignment:
Q  146 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    |||||| ||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  28363539 tttatgtcatttcatacttataaactagttcaacagctaatattaccaaacactacaaattcaatca 28363605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 17902785 - 17902864
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    |||||||| || | ||||||||||| |||||||||| |||| ||||||||||||||||||||| |||||||||| |||||    
T  17902785 tttttatgtcaatacatatttataagctagttcaactgctagttttaccaaacactacaaatttaatcaactagtttatc 17902864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 17259595 - 17259672
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    |||||||  |||||||| ||||||||| |||||| |||||||||||||||||||||| || |||| ||||||||||||    
T  17259595 aatatatcttttttatgtcatttcatacttataagctagttcaaccgctaattttactaaccactgcaaattcaatca 17259672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 41892848 - 41892771
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    |||||||  ||||||||  ||||||||||||||| |||||| ||||| ||||| ||||||||||||||||||||||||    
T  41892848 aatatatattttttatggtatttcatatttataagctagtttaaccgttaattataccaaacactacaaattcaatca 41892771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 43315610 - 43315537
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactag 217  Q
    |||||||| |||||||||||||||| ||||||||||| ||||||||    ||||||||||||||||||||||||    
T  43315610 tttttatgacatttcatatttataagctagttcaaccactaattttgatcaacactacaaattcaatcaactag 43315537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 32046915 - 32046974
Alignment:
Q  152 ccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 211  Q
    |||||||||||||| || ||||||||||||||||| |||||||||||| |||||||||||    
T  32046915 ccatttcatatttaaaagctagttcaaccgctaatattaccaaacactccaaattcaatc 32046974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 31677291 - 31677369
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 222  Q
    |||| ||| |||||||||||| ||| ||||||||||||||| ||||||||||||||  ||||||||||| |||| ||||    
T  31677291 ttttgatgtcatttcatatttgtaagctagttcaaccgctagttttaccaaacactgtaaattcaatcagctagcttat 31677369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 16869981 - 16869924
Alignment:
Q  55 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttacccttgta 114  Q
    |||||||||||||||||| |||||  |||||||||| |||||||||||||||||||||||    
T  16869981 ataagctaattcaagtagcttata--gcttatcattttttatttcaattttacccttgta 16869924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 31806671 - 31806595
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 211  Q
    ||||||| | ||||||| ||||||||||||||||  |||||||| |  ||||||||||||||| |||||||||||||    
T  31806671 aatatatcacttttatgtcatttcatatttataagatagttcaatccttaattttaccaaacaatacaaattcaatc 31806595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 144 - 248
Target Start/End: Original strand, 34640176 - 34640280
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattag 243  Q
    |||||||| |||||||||||||||| |||    |||| |||||||||||||||| |||||||||||| | |||| |||||  |||| ||||||||  |||    
T  34640176 tttttatgtcatttcatatttataagctacaataaccactaattttaccaaacattacaaattcaataagctagcttatccgctatcagctataagctag 34640275  T
Q  244 cttat 248  Q
    |||||    
T  34640276 cttat 34640280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 1621486 - 1621438
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttacc 192  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||||    
T  1621486 tttttatgtcatttcatatttataagctacttcaaccgctaattttacc 1621438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 1786947 - 1786868
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    |||||||| ||||||||||||||  ||||||||||||  | ||||| |||||||||||||| | ||||| |||| |||||    
T  1786947 tttttatgtcatttcatatttatcgactagttcaaccattgattttgccaaacactacaaacttaatcagctagtttatc 1786868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 6462308 - 6462239
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    |||||||||||||||| ||| |  | ||||||||||||| |||||||||||||||||||| |||| |||||    
T  6462308 catttcatatttataacctaatg-agccgctaattttactaaacactacaaattcaatcagctagcttatc 6462239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 31812155 - 31812205
Alignment:
Q  172 agttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 222  Q
    |||| ||||| |||||||||||||||||||||||||||||| |||| ||||    
T  31812155 agttgaaccgttaattttaccaaacactacaaattcaatcagctagcttat 31812205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 15444122 - 15444175
Alignment:
Q  146 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    |||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||    
T  15444122 tttatgtcattttatatttatcaactagttgaaccgctatttttaccaaacact 15444175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 17903168 - 17903107
Alignment:
Q  162 tttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    |||||||  |||||||||| |||||||||||||||||  || |||||||||||||| |||||    
T  17903168 tttataagttagttcaaccactaattttaccaaacacggcacattcaatcaactagtttatc 17903107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 25832442 - 25832361
Alignment:
Q  142 tatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    ||||| |||| ||||||||||||||||||||||| ||| | ||||||||  ||||| || |||||||| ||| || ||||||    
T  25832442 tatttgtatgtcatttcatatttataaactagttgaactgttaattttataaaacattaaaaattcaaccaattaaattatc 25832361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 5390454 - 5390494
Alignment:
Q  170 ctagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  5390454 ctagttcaaccgctcatttaaccaaacactacaaattcaat 5390494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 9397225 - 9397173
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaaca 197  Q
    ||||||| ||||||| |||||| | |||||| |||||||||||||||||||||    
T  9397225 ttttatgtcatttcacatttatcatctagttgaaccgctaattttaccaaaca 9397173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 29225945 - 29225897
Alignment:
Q  174 ttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 222  Q
    ||||||| ||||||||| |||||||||||||||||| || |||||||||    
T  29225945 ttcaaccactaattttatcaaacactacaaattcaaccagctagattat 29225897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 8173396 - 8173467
Alignment:
Q  138 atattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaa 209  Q
    ||||| || ||||| |||||||||||||||   ||||||| |||||||||||| ||||  ||||||||||||    
T  8173396 atatttttgttatgtcatttcatatttataggttagttcatccgctaattttatcaaaagctacaaattcaa 8173467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 22572689 - 22572740
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaa 195  Q
    |||||||| |||||||||||||||| ||||||||| | ||||||||| ||||    
T  22572689 tttttatgtcatttcatatttataagctagttcaatctctaattttatcaaa 22572740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 29226434 - 29226374
Alignment:
Q  55 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttacccttgtattc 117  Q
    |||||||| ||||||||| |||||   |||||||||||||||| ||||||||||| |||||||    
T  29226434 ataagctagttcaagtagcttataa--cttatcattatttattccaattttacccatgtattc 29226374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 1175441 - 1175495
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  1175441 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 1175495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 1621585 - 1621530
Alignment:
Q  55 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttacccttg 112  Q
    |||||||||||||||||| |||||  |||||||| | ||||| |||||||||||||||    
T  1621585 ataagctaattcaagtagcttata--gcttatcagtttttatctcaattttacccttg 1621530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 3670961 - 3671015
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  3670961 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 3671015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 18641257 - 18641307
Alignment:
Q  166 taaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 216  Q
    |||| |||||||||| |||| |||| |||||||| ||||||||||||||||    
T  18641257 taaattagttcaaccactaagtttatcaaacacttcaaattcaatcaacta 18641307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 22028851 - 22028912
Alignment:
Q  149 atgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 211  Q
    ||||||||||||| |||||| ||||||||||  || ||||||| |||||||| ||||||||||    
T  22028851 atgccatttcatacttataagctagttcaacgact-attttacgaaacactataaattcaatc 22028912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 22653364 - 22653418
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| | |||||| | |||||| |||||||||||||||||||||||    
T  22653364 ttttatgtcattttacatttatcagctagttgaaccgctaattttaccaaacact 22653418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 30773648 - 30773594
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  30773648 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 30773594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 35236064 - 35236010
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  35236064 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 35236010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 36909604 - 36909666
Alignment:
Q  161 atttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    |||||| | ||||||||||||| ||||||| |||||||| ||||||||||  ||||| |||||    
T  36909604 atttatcagctagttcaaccgccaattttatcaaacacttcaaattcaattcactagcttatc 36909666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 19955783 - 19955730
Alignment:
Q  146 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    |||||||||||| | |||||| | |||||| |||||||| ||||||||||||||    
T  19955783 tttatgccattttacatttatcagctagttgaaccgctatttttaccaaacact 19955730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 32815808 - 32815853
Alignment:
Q  165 ataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    ||||||||||||||||| ||||||||||||||| || |||| ||||    
T  32815808 ataaactagttcaaccgttaattttaccaaacattataaatccaat 32815853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 41662545 - 41662500
Alignment:
Q  165 ataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    ||||||||||||||||| |||||||| |||||| ||||||| ||||    
T  41662545 ataaactagttcaaccgttaattttatcaaacattacaaatccaat 41662500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 6462396 - 6462364
Alignment:
Q  77 tatagcttatcattatttatttcaattttaccc 109  Q
    |||||||||||||||||||| ||||||||||||    
T  6462396 tatagcttatcattatttatctcaattttaccc 6462364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 7897120 - 7897172
Alignment:
Q  147 ttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||| ||||| |||||||| | |||||| |||||||||||||| ||||||||    
T  7897120 ttatgtcattttatatttatcagctagttgaaccgctaattttatcaaacact 7897172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 28363475 - 28363532
Alignment:
Q  55 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttacccttgta 114  Q
    ||||||||| |||||||| |||||  |||||||||| ||||| |||||||||| ||||||    
T  28363475 ataagctaactcaagtagcttata--gcttatcattttttatctcaattttactcttgta 28363532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 56)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 39276510 - 39276601
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagcta 235  Q
    |||||||| ||||| | |||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||| |||| | ||||||||||    
T  39276510 tttttatgtcatttaagatttataagctagttcaaccactaattttaccaaacactacaaattcaatcagctaggttataagctattagcta 39276601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 55 - 206
Target Start/End: Original strand, 3535209 - 3535358
Alignment:
Q  55 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttacccttgtattcataattgnnnnnnnttcaatatattatttttatgcca 154  Q
    |||||||||||||||||| |||||  |||||||||||| |||   |||||||||| ||||||| |||| |       ||  |||||||||||||||| ||    
T  3535209 ataagctaattcaagtagcttata--gcttatcattatatatccaaattttacccctgtattcttaatcgaaaagaattagatatattatttttatgtca 3535306  T
Q  155 tttcatatttataaactagttcaaccgctaattttaccaaacactacaaatt 206  Q
    ||||||||||||||  || |||||| | ||| ||||||||||||||||||||    
T  3535307 tttcatatttataagttaattcaactggtaaatttaccaaacactacaaatt 3535358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 52327445 - 52327512
Alignment:
Q  156 ttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || |||| |||||    
T  52327445 ttcatatttataagctagttcaactgctaattttaccaaacactacaaattcaaccagctagcttatc 52327512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 323
Target Start/End: Original strand, 4149051 - 4149229
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagc 244  Q
    ||||||| ||| ||||||||||||| ||| ||||||  ||||||||||||||||| |||||||||||   ||| ||||| ||||| ||||||||  || |    
T  4149051 ttttatgtcatctcatatttataaattagctcaaccagtaattttaccaaacactgcaaattcaatcggttagtttatccactataagctataagctaac 4149150  T
Q  245 ttatcagctacccactataacctcatccgctaaaaactagtttataagttattcgctattctttactaaacagagccta 323  Q
    |||| | |||  | |||||| |||||||| || || |||  |||| | |||||| ||||| ||||| ||||| ||||||    
T  4149151 ttataatctattcgctataagctcatccgttataagctatcttatcaattattcactattttttaccaaacaaagccta 4149229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 34812743 - 34812665
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    ||||||| |||||||||||||||| ||||||||||| | |||||||| ||||||| |||||||||||| |||| |||||    
T  34812743 ttttatgtcatttcatatttataagctagttcaaccacaaattttactaaacactgcaaattcaatcagctagcttatc 34812665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 44555652 - 44555574
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaa 213  Q
    ||||||| | ||||||| ||||||||||||||||  ||||| |||||||||||||||||||||||||| ||||| ||||    
T  44555652 aatatatcacttttatgtcatttcatatttataaggtagtttaaccgctaattttaccaaacactacagattcattcaa 44555574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 41173915 - 41173984
Alignment:
Q  147 ttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 216  Q
    ||||| ||||||||||||| || ||||||||| || ||||||||||||||| ||||||||||||||||||    
T  41173915 ttatgtcatttcatatttacaagctagttcaatcgataattttaccaaacaatacaaattcaatcaacta 41173984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 6323920 - 6323840
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatca 224  Q
    |||||||| |||||||||||||| | | |||||| || |||||||||| ||||||||| ||||||||||||||| ||||||    
T  6323920 tttttatgtcatttcatatttatcagcaagttcagccactaattttacaaaacactacgaattcaatcaactagtttatca 6323840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 42617731 - 42617805
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    ||||| ||||||| ||| ||||||||||||||||| ||||||||||| ||| ||||| ||||||||||||||||||    
T  42617731 aatattttattttcatgtcatttcatatttataaattagttcaaccgttaa-tttactaaacactacaaattcaat 42617805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 27611862 - 27611816
Alignment:
Q  171 tagttcaaccgctaattttaccaaacactacaaattcaatcaactag 217  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  27611862 tagttcaactgctaattttaccaaacactacaaattcaatcaactag 27611816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 52831589 - 52831655
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    ||||||||||||||||||||||||| ||| ||||| |||| |||||||| ||| |||||||||||||    
T  52831589 tttttatgccatttcatatttataagctacttcaatcgctgattttaccgaactctacaaattcaat 52831655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 39033634 - 39033718
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactat 229  Q
    ||||||| |||||||||||| |||  ||||| ||||| |||||||| ||||||||||||||||||||| |||  |||||| ||||    
T  39033634 ttttatgtcatttcatatttttaagttagtttaaccgataattttatcaaacactacaaattcaatcagctaatttatcatctat 39033718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 2103267 - 2103188
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    |||||||| ||||| ||||||||||  | ||||||||  |||||||||||||||||||||||||||| | |||| |||||    
T  2103267 tttttatgtcattttatatttataagtttgttcaaccattaattttaccaaacactacaaattcaataagctagcttatc 2103188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 30802416 - 30802490
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    ||||||| | ||||||| ||||||||||||||||  || ||||| || ||||||||||||||||||||||||||||    
T  30802416 aatatatcagttttatgtcatttcatatttataagttaattcaatcg-taattttaccaaacactacaaattcaat 30802490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 31494561 - 31494486
Alignment:
Q  155 tttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactatt 230  Q
    |||||||||||||| ||| |||||||||||||||| ||||||| ||||||||||| ||| | | |||||| |||||    
T  31494561 tttcatatttataatctaattcaaccgctaattttgccaaacaatacaaattcaaccaaattgtttatcagctatt 31494486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 21501773 - 21501843
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    ||||||||| |||||| |||||| ||||||||||| ||||||||||||| |||| ||||| |||| |||||    
T  21501773 catttcatacttataagctagtttaaccgctaattctaccaaacactacgaatttaatcagctagtttatc 21501843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 52986420 - 52986362
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 211  Q
    ||||||||||||| || ||| |||||||||||||||||||| |||||||||||| ||||    
T  52986420 catttcatatttagaagctacttcaaccgctaattttaccatacactacaaatttaatc 52986362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 30070324 - 30070381
Alignment:
Q  177 aaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagct 234  Q
    |||||||||||||||||||||||||||||||||| | |||| ||||| ||||| ||||    
T  30070324 aaccgctaattttaccaaacactacaaattcaattagctagcttatccactatgagct 30070381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 21191215 - 21191291
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 211  Q
    ||||||| |||||||||  ||| |||| ||||||| ||| |||||| |||||||||||||||| || ||||||||||    
T  21191215 aatatataatttttatgttattccatacttataaattagctcaacctctaattttaccaaacaatataaattcaatc 21191291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 26026815 - 26026871
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaa 209  Q
    ||||||||||||||||| ||||||||  ||||| |||| ||||||||||||||||||    
T  26026815 catttcatatttataaattagttcaattgctaaatttatcaaacactacaaattcaa 26026871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 41758661 - 41758717
Alignment:
Q  154 atttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    ||||||||||||||   ||||||||| |||||||||||| |||||||||||||||||    
T  41758661 atttcatatttatacgttagttcaactgctaattttaccgaacactacaaattcaat 41758717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 4120310 - 4120357
Alignment:
Q  159 atatttataaactagttcaaccgctaattttaccaaacactacaaatt 206  Q
    ||||||||||||||||||||| | |||||||| |||||||||||||||    
T  4120310 atatttataaactagttcaactgataattttatcaaacactacaaatt 4120357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 47789431 - 47789372
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    |||||| |||||| || | | ||||||||||||||||||||||||||||||| |||||||    
T  47789431 catttcgtatttagaagcaacttcaaccgctaattttaccaaacactacaaaatcaatca 47789372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 466743 - 466813
Alignment:
Q  154 atttcatatttataaactagttcaaccgctaattttaccaaa-cactacaaattcaatcaactagattatc 223  Q
    ||||||||||||||| | ||||||||| |||| ||||| ||| |||| ||||||||||||||||| |||||    
T  466743 atttcatatttataagcaagttcaaccactaaatttacaaaaacacttcaaattcaatcaactagcttatc 466813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 5645929 - 5645863
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 211  Q
    ||||||| |||||||||||||||||| |  |||||  | |||||||||||||| |||||||||||||    
T  5645929 ttttatggcatttcatatttataaacaaaatcaacaaccaattttaccaaacaatacaaattcaatc 5645863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 17425638 - 17425588
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaa 203  Q
    ||||||||||||||||  || ||||||| ||||||||||||||||||||||    
T  17425638 catttcatatttataagttacttcaaccactaattttaccaaacactacaa 17425588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 24418177 - 24418112
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    |||||||| |||||||||||||||| ||| || |||  ||||||| |||||||||||||||||||||    
T  24418177 tttttatgtcatttcatatttataagctacttgaacaactaattt-accaaacactacaaattcaat 24418112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 37713450 - 37713516
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    |||||||| |||||||||||||||| |||||||  |  ||||||||||| |||| ||||||||||||    
T  37713450 tttttatgtcatttcatatttataagctagttccgcaactaattttacccaacattacaaattcaat 37713516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 50570284 - 50570225
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaac 214  Q
    ||||||||||||||||| || ||||||||  ||||||||||||||||| |||||| ||||||    
T  50570284 catttcatatttataaattaattcaaccg--aattttaccaaacactataaattcgatcaac 50570225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 53431466 - 53431404
Alignment:
Q  148 tatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    |||| ||||||||||||||||| |||||||||  |||||||||| ||||| | ||||||||||    
T  53431466 tatgtcatttcatatttataaattagttcaacgactaattttacgaaacattgcaaattcaat 53431404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 1162345 - 1162434
Alignment:
Q  134 caatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    |||||||| ||||||||| ||||| ||| ||||||  ||||  |||   ||||||||||||| | |||||||||||||| ||||||||||    
T  1162345 caatatatcatttttatggcattttataattataagatagtctaacgattaattttaccaaatattacaaattcaatcagctagattatc 1162434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 12637747 - 12637804
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    |||||||||||||||| | |||| ||| ||||||||||||||||| ||| ||||||||    
T  12637747 catttcatatttataagcaagttaaacagctaattttaccaaacattactaattcaat 12637804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 27247475 - 27247551
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 211  Q
    ||||||| |||||||||  ||| |||| ||||||| ||| |||| | |||||||||||||||| || ||||||||||    
T  27247475 aatatataatttttatgttattccatacttataaattagctcaatctctaattttaccaaacaatataaattcaatc 27247551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 49262855 - 49262926
Alignment:
Q  183 taattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttatcagctac 255  Q
    ||||||||||||||||||||  ||||||||| ||  |||||  ||||||||||||| ||||||||||| ||||    
T  49262855 taattttaccaaacactacat-ttcaatcaattatcttatccgctattagctataagttagcttatcaactac 49262926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 3919238 - 3919183
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    |||||||| ||||| | |||||| |||||||| ||||||||| |||||||||||||    
T  3919238 tttttatgtcattttacatttatcaactagttgaaccgctaactttaccaaacact 3919183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 19450475 - 19450420
Alignment:
Q  154 atttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaa 209  Q
    |||| |||||||| |||||||||||| |||||| |||||||||||| ||| |||||    
T  19450475 attttatatttatcaactagttcaactgctaatattaccaaacacttcaatttcaa 19450420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 33890277 - 33890348
Alignment:
Q  155 tttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaac 226  Q
    ||||||||||||||  ||||||||| | |||||||| |||||| |||||||| |||| ||||  ||||||||    
T  33890277 tttcatatttataagatagttcaacagttaattttatcaaacattacaaatttaatcgactaacttatcaac 33890348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 46765425 - 46765366
Alignment:
Q  155 tttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaac 214  Q
    ||||||||||||||   || ||||  |||||||||| |||||||||||||||||||||||    
T  46765425 tttcatatttataagtaagctcaagtgctaattttagcaaacactacaaattcaatcaac 46765366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 22431462 - 22431516
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| ||||||||||  ||||| |||| ||||||||||||||||||    
T  22431462 ttttatgtcattttatatttataagttagttgaaccactaattttaccaaacact 22431516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 22815017 - 22814959
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 211  Q
    ||||| |||||||||| ||||||||| ||| ||||| | ||||||||||||||| ||||    
T  22815017 catttgatatttataagctagttcaagcgccaatttcatcaaacactacaaatttaatc 22814959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 35580416 - 35580362
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| || ||||||| |||||| ||||| |||||||||||||||||    
T  35580416 ttttatgtcattttatgtttataagctagttgaaccgttaattttaccaaacact 35580362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 37393017 - 37392968
Alignment:
Q  55 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttac 107  Q
    |||||||||||||||||    ||||||||||||||||||||| ||||||||||    
T  37393017 ataagctaattcaagtac---atatagcttatcattatttatctcaattttac 37392968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 50133282 - 50133340
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactaca 202  Q
    |||| ||| ||||| |||||||||| ||||||||||  |||||||||||||||| ||||    
T  50133282 ttttgatgtcatttgatatttataagctagttcaacatctaattttaccaaacaataca 50133340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 3930150 - 3930097
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacac 198  Q
    ||||||| ||||| | |||||| |||||||| |||| |||||||||||||||||    
T  3930150 ttttatgtcattttacatttatcaactagttgaacctctaattttaccaaacac 3930097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 8130344 - 8130283
Alignment:
Q  162 tttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    ||||||| |||||||||| ||||  |||| |||| |||||||||||||||| |||| |||||    
T  8130344 tttataagctagttcaactgctagctttatcaaatactacaaattcaatcagctagcttatc 8130283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 17896159 - 17896236
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    |||||||| ||||||||  |||||| ||||||||  | ||||| ||| |||||| | ||||||||| |||||||||||    
T  17896159 aatatattttttttatgttatttcaaatttataagtttgttcagccgttaatttcatcaaacactaaaaattcaatca 17896236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 28162724 - 28162671
Alignment:
Q  138 atattatttttatgccatttcatatttataaactagttcaaccgctaattttac 191  Q
    ||||| |||||||| |||||||||||||| ||||| |||||| | |||||||||    
T  28162724 atattttttttatgtcatttcatatttatcaactaattcaacagttaattttac 28162671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 37114760 - 37114707
Alignment:
Q  146 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    |||||| ||||| | |||||| |||||||| |||||||| ||||||||||||||    
T  37114760 tttatgtcatttgacatttatcaactagttgaaccgctatttttaccaaacact 37114707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 37713341 - 37713398
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    |||||||||||||||| |||||||  |  ||||||||||| |||| ||||||||||||    
T  37713341 catttcatatttataagctagttccgcaactaattttacccaacattacaaattcaat 37713398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 47139070 - 47138998
Alignment:
Q  142 tatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaact 215  Q
    ||||||||||  |||| ||||||| |||| ||||||||  ||||||  |||||||||| |||||||||||||||    
T  47139070 tatttttatgttattttatatttaaaaaccagttcaacaactaattc-accaaacacttcaaattcaatcaact 47138998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 20530515 - 20530447
Alignment:
Q  174 ttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaatta 242  Q
    ||||||||||||||||||||||||||  || || ||| | |||| || |||||||| |||||| |||||    
T  20530515 ttcaaccgctaattttaccaaacactttaattttaataagctagtttttcaactataagctatcaatta 20530447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 20988849 - 20988800
Alignment:
Q  55 ataagctaattcaagtagtttatatagcttatcattatttatttcaatttta 106  Q
    |||||||||||||||||| |||||  |||||||||| ||||| |||||||||    
T  20988849 ataagctaattcaagtagcttata--gcttatcattttttatctcaatttta 20988800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 31235409 - 31235381
Alignment:
Q  178 accgctaattttaccaaacactacaaatt 206  Q
    |||||||||||||||||||||||||||||    
T  31235409 accgctaattttaccaaacactacaaatt 31235381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 31736177 - 31736124
Alignment:
Q  55 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttaccct 110  Q
    ||||||||||||||||||||  |||||||||| ||| ||||| | |||||||||||    
T  31736177 ataagctaattcaagtagtt--tatagcttataattttttatctaaattttaccct 31736124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 49551651 - 49551703
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaaca 197  Q
    ||||||| ||||| | ||||| || |||||| |||||||||||||||||||||    
T  49551651 ttttatgtcattttacatttacaagctagttgaaccgctaattttaccaaaca 49551703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 50812930 - 50812986
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttac 191  Q
    ||||||||| ||||||| ||||| ||||||||||  ||||||||||| ||| |||||    
T  50812930 aatatattacttttatgtcattttatatttataagatagttcaaccgataactttac 50812986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 2525285 - 2525365
Alignment:
Q  143 atttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    |||||||||| ||||||||||||||| |||||||| | ||||||||||||||||| |||||||||||||| |||| |||||    
T  2525285 atttttatgcaatttcatatttataagctagttcagctgctaattttaccaaacaatacaaattcaatcagctagcttatc 2525365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 24314240 - 24314164
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    ||||||| | ||||||||||||||||||||| |||||| |||||||| ||||||||||||| ||||||||||||||||    
T  24314240 aatatatcacttttatgccatttcatatttacaaactaattcaaccgttaattttaccaaa-actacaaattcaatca 24314164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 28175513 - 28175409
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattag 243  Q
    |||||||| |||||||||||| ||| ||| |||||||||||||| || |||||||||||||||||  ||||||| | |||  |||| ||||||||  |||    
T  28175513 tttttatgtcatttcatatttgtaagctacttcaaccgctaattatatcaaacactacaaattcagccaactagctgatccgctatcagctataagctag 28175414  T
Q  244 cttat 248  Q
    |||||    
T  28175413 cttat 28175409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 87221 - 87160
Alignment:
Q  143 atttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaa 204  Q
    ||||||||| ||||||||||||| || ||| |||||||||||||||||| ||||||||||||    
T  87221 atttttatgtcatttcatatttacaatctaattcaaccgctaattttacaaaacactacaaa 87160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 15050965 - 15051038
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactag 217  Q
    |||||||| ||||||||| | |||| ||||||||||| ||||||||||||||||||  ||||||||||| ||||    
T  15050965 tttttatgtcatttcatactcataagctagttcaaccactaattttaccaaacactctaaattcaatcagctag 15051038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 31740571 - 31740689
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagct 234  Q
    ||||||||| |||||||  |||||||||||||||  || ||||| || ||||||||||||||||| |||||||||| | |||  |||||  |||| | ||    
T  31740571 aatatattagttttatgttatttcatatttataagttaattcaatcg-taattttaccaaacactgcaaattcaataagctaacttatctgctatcatct 31740669  T
Q  235 ataaattagcttatcagcta 254  Q
    ||||| ||| ||||||||||    
T  31740670 ataaactagtttatcagcta 31740689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 44235417 - 44235370
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttac 191  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||    
T  44235417 tttttatgtcatttcatatttataaactacttcaaccgctaattttac 44235370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 13438391 - 13438329
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaatt 206  Q
    |||||||| ||||| ||||||||||  ||||| |||||||||||| |||||||||||||||||    
T  13438391 tttttatgtcattttatatttataagttagtttaaccgctaatttaaccaaacactacaaatt 13438329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 144 - 242
Target Start/End: Complemental strand, 43911172 - 43911074
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaatta 242  Q
    |||||||  |||||||| |||||||  |||||||||| || ||||||||||| |||||||||||||||| |||| | ||| ||||  |||||| |||||    
T  43911172 tttttatatcatttcatgtttataagttagttcaaccactgattttaccaaatactacaaattcaatcatctagctaatctactacaagctatcaatta 43911074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 3837090 - 3837143
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaatt 206  Q
    |||| ||||||||||| ||| |||||| ||||||||||||||||||||||||||    
T  3837090 cattacatatttataagctacttcaacggctaattttaccaaacactacaaatt 3837143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 19683518 - 19683449
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaa 213  Q
    ||||| || |||||||||||||| |  || ||||||||||| ||||| ||||||||||||||||||||||    
T  19683518 tttttttgtcatttcatatttattagttacttcaaccgctatttttatcaaacactacaaattcaatcaa 19683449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 28039923 - 28039854
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaa 213  Q
    ||||||||  |||| |||||||||| ||| ||||||| ||||||||| |||||||||||||| |||||||    
T  28039923 tttttatgtaattttatatttataacctacttcaacctctaattttatcaaacactacaaatgcaatcaa 28039854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 19087403 - 19087471
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    |||||||| |||||||||||| |||| || |||||||| |||||||| |||| |||| |||||||||||    
T  19087403 tttttatgtcatttcatatttttaaattaattcaaccgttaattttatcaaatactataaattcaatca 19087471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 11991506 - 11991455
Alignment:
Q  159 atatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    |||||||||||||| |||||| || ||||||| |||||||||||||||||||    
T  11991506 atatttataaactatttcaacggcgaattttatcaaacactacaaattcaat 11991455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 31627636 - 31627690
Alignment:
Q  155 tttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaa 209  Q
    ||||||||||||||  ||||||||| | |||||||| ||||||||||||||||||    
T  31627636 tttcatatttataagttagttcaacggttaattttatcaaacactacaaattcaa 31627690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 21578038 - 21578103
Alignment:
Q  185 attttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttatca 250  Q
    |||||| |||| ||||||||||||| ||| ||| ||||| | |||||||||||||||| |||||||    
T  21578038 attttaacaaagactacaaattcaaccaattaggttatccattattagctataaattaacttatca 21578103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 28543588 - 28543536
Alignment:
Q  154 atttcatatttataaactagttcaaccgctaattttaccaaacactacaaatt 206  Q
    ||||||||||||||||||| ||||| | |||||||||||||||| || |||||    
T  28543588 atttcatatttataaactatttcaatcactaattttaccaaacaatataaatt 28543536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 883879 - 883930
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaa 195  Q
    |||||||| |||||||||||||||| ||| |||||||| |||||||| ||||    
T  883879 tttttatgtcatttcatatttataagctacttcaaccgttaattttatcaaa 883930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 1243208 - 1243259
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaa 195  Q
    |||||||| |||||||||||||||| ||| |||||||| |||||||| ||||    
T  1243208 tttttatgtcatttcatatttataagctacttcaaccgttaattttatcaaa 1243259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 7379541 - 7379659
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagct 234  Q
    ||||||| | ||||||| ||||| ||||||||||  || ||||| || ||||||||||||||| | |||| ||||||| |||  ||||| ||||| | ||    
T  7379541 aatatatcaattttatgtcattttatatttataagttaattcaatcg-taattttaccaaacattgcaaactcaatcagctaacttatccactatcatct 7379639  T
Q  235 ataaattagcttatcagcta 254  Q
    ||||  ||| ||||||||||    
T  7379640 ataagctagtttatcagcta 7379659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 26769318 - 26769393
Alignment:
Q  141 ttatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 216  Q
    |||||||||||  ||||||||||| ||||| | | |||| | |||||||| |||||| |||||| |||||||||||    
T  26769318 ttatttttatgtaatttcatatttgtaaaccaatccaacagttaattttatcaaacattacaaaatcaatcaacta 26769393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 29234852 - 29234891
Alignment:
Q  184 aattttaccaaacactacaaattcaatcaactagattatc 223  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  29234852 aattttatcaaacactacaaattcaatcaactagcttatc 29234891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 45672999 - 45673054
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    |||||||| ||||| | ||||||||  |||||| ||||||||||||||||||||||    
T  45672999 tttttatgtcattttacatttataagttagttctaccgctaattttaccaaacact 45673054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 482461 - 482407
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  482461 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 482407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 30339359 - 30339325
Alignment:
Q  177 aaccgctaattttaccaaacactacaaattcaatc 211  Q
    ||||| |||||||||||||||||||||||||||||    
T  30339359 aaccgataattttaccaaacactacaaattcaatc 30339325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 36112732 - 36112678
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacac 198  Q
    |||||||| |||||||||||||||| ||||||||||  ||||||  |||||||||    
T  36112732 tttttatgtcatttcatatttataagctagttcaacaactaattgcaccaaacac 36112678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 42967783 - 42967850
Alignment:
Q  55 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttacccttgtattcataattg 124  Q
    |||||||||||||||||| |  || ||||||||| ||||||||  |||||||||| ||||||| ||||||    
T  42967783 ataagctaattcaagtagct--taaagcttatcactatttattcaaattttacccatgtattcttaattg 42967850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 43135093 - 43135147
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  43135093 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 43135147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 44235370 - 44235316
Alignment:
Q  158 catatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    ||||||||||| ||| |||||| | ||| |||||||||||||||||||| |||||    
T  44235370 catatttataagctacttcaacggttaactttaccaaacactacaaattaaatca 44235316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 44597295 - 44597349
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  44597295 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 44597349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 21375299 - 21375352
Alignment:
Q  146 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    |||||| ||||| |||||||| | |||||| |||||||| ||||||||||||||    
T  21375299 tttatgtcattttatatttatcagctagttgaaccgctatttttaccaaacact 21375352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 21561561 - 21561524
Alignment:
Q  158 catatttataaactagttcaaccgctaattttaccaaa 195  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  21561561 catatttagaaactaattcaaccgctaattttaccaaa 21561524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 24171477 - 24171530
Alignment:
Q  146 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    |||||| ||||| |||||||| | |||||| |||| ||||||||||||||||||    
T  24171477 tttatgtcattttatatttatcagctagttgaaccactaattttaccaaacact 24171530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 25129872 - 25129807
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaa 209  Q
    |||||| | ||||||||| |||||| |||||||   | | ||||||||||||||||||||||||||    
T  25129872 tttttacgtcatttcatagttataacctagttcggtcacaaattttaccaaacactacaaattcaa 25129807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 33027535 - 33027588
Alignment:
Q  146 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    |||||| ||||| |||||||| | |||||| |||||||| ||||||||||||||    
T  33027535 tttatgtcattttatatttatcagctagttgaaccgctatttttaccaaacact 33027588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 36122041 - 36122118
Alignment:
Q  159 atatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctat 236  Q
    |||||||| ||||| |||||| |||||||||||||||||||  || || ||| |||||| || ||| |||| ||||||    
T  36122041 atatttatcaactacttcaacagctaattttaccaaacactttaattttaataaactagtttttcagctataagctat 36122118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 42967875 - 42967928
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattt 188  Q
    |||||||||| |||||| |||||||||||||||| ||||| |||  ||||||||    
T  42967875 aatatattatctttatgtcatttcatatttataagctagtacaatggctaattt 42967928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 45221562 - 45221509
Alignment:
Q  146 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    |||||| ||||| | |||||| |||||||| |||||||| ||||||||||||||    
T  45221562 tttatgtcattttacatttatcaactagttgaaccgctatttttaccaaacact 45221509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 45352898 - 45352962
Alignment:
Q  148 tatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    |||| ||||| |||||||| |  ||| |||||||||||||||  | |||||||||||||||||||    
T  45352898 tatgtcatttgatatttatgagttagctcaaccgctaattttgtcgaacactacaaattcaatca 45352962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 29052692 - 29052773
Alignment:
Q  142 tatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    |||||||||| |||||||||||||||| |||| | ||||||| ||||||||||||||| |||||||||||| |||| |||||    
T  29052692 tatttttatgtcatttcatatttataagctaggtgaaccgcttattttaccaaacactgcaaattcaatcagctagcttatc 29052773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 9749888 - 9749801
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 222  Q
    ||||||||||||| |||  | |||||||||||| |||| ||||||| ||||||||||||||||||||||||| ||||| |||| ||||    
T  9749888 aatatattattttcatgttacttcatatttatacactacttcaaccactaattttaccaaacactacaaattaaatcagctagcttat 9749801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 34544421 - 34544486
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaa 209  Q
    |||||||| |||||||||||||||| ||||||||||| |||||| || ||||||||||||||||||    
T  34544421 tttttatgtcatttcatatttataagctagttcaaccactaattgtatcaaacactacaaattcaa 34544486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 3341286 - 3341346
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaa 213  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||||||| ||||| ||||||    
T  3341286 catttcatatttatagactatttcaaccgctaattttatcaaacactataaattaaatcaa 3341346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 2748348 - 2748289
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    ||||||||||||||||||||||||||||| ||||||||  |||||||  |||||||||||    
T  2748348 catttcatatttataaactagttcaaccgttaattttattaaacactgtaaattcaatca 2748289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 8014485 - 8014427
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 211  Q
    |||||||| ||||||| ||||||| || |||||||||||||||||||| ||||||||||    
T  8014485 catttcatgtttataagctagttcgactgctaattttaccaaacactataaattcaatc 8014427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 146 - 248
Target Start/End: Original strand, 13692520 - 13692621
Alignment:
Q  146 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagct 245  Q
    |||||| |||||||||||||| ||||| ||||||| ||||||||| |||| ||||| ||||| |||| |||  ||||| ||||| | |||||||||| ||    
T  13692520 tttatgtcatttcatatttattaactacttcaaccactaattttatcaaatactac-aattctatcagctaacttatctactatcaactataaattaact 13692618  T
Q  246 tat 248  Q
    |||    
T  13692619 tat 13692621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 25142326 - 25142248
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaa 213  Q
    ||||||| | ||||||  ||||||||||||||||| ||||||||||  |||||||| |||| | |||||||||||||||    
T  25142326 aatatatcacttttatatcatttcatatttataaaatagttcaaccattaattttatcaaatattacaaattcaatcaa 25142248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 1288436 - 1288501
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    ||||||| ||||||||||||||||  || |||||||| |||||||| ||||||||||||| |||||    
T  1288436 ttttatgtcatttcatatttataagttatttcaaccgttaattttatcaaacactacaaaatcaat 1288501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 2255918 - 2255971
Alignment:
Q  163 ttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 216  Q
    |||||| ||||||||||| |||||||||  ||||||||||||||||||||||||    
T  2255918 ttataagctagttcaaccactaattttattaaacactacaaattcaatcaacta 2255971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 29490215 - 29490276
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaac 196  Q
    ||||||||||||||||  ||||||||||||||||| || |||||||  ||||||||||||||    
T  29490215 aatatattatttttatatcatttcatatttataaattacttcaaccattaattttaccaaac 29490276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 724711 - 724767
Alignment:
Q  154 atttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    |||| |||||||||| ||| ||||||| ||||||||| |||||||||||||||||||    
T  724711 attttatatttataagctacttcaaccactaattttatcaaacactacaaattcaat 724767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 4912509 - 4912551
Alignment:
Q  171 tagttcaaccgctaattttaccaaacactacaaattcaatcaa 213  Q
    |||||||||| |||||||||||||| |||||||||||||||||    
T  4912509 tagttcaaccactaattttaccaaaaactacaaattcaatcaa 4912551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 9750320 - 9750382
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaatt-ttaccaaacactacaaat 205  Q
    ||||||||  ||||||||||||||| |||||||||| ||||||| |||||||| |||||||||    
T  9750320 tttttatgtgatttcatatttataagctagttcaacagctaattcttaccaaatactacaaat 9750382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 27720111 - 27720057
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| | |||||||| |||||| |||||||||||||||||||||||    
T  27720111 ttttatgtcattttacatttataagctagttgaaccgctaattttaccaaacact 27720057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 34431392 - 34431457
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    |||| ||| ||||||||||||| |||||||||||||   ||||||| ||||||||||||||||||||    
T  34431392 ttttcatgtcatttcatattta-aaactagttcaactattaattttgccaaacactacaaattcaat 34431457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 9195637 - 9195700
Alignment:
Q  143 atttttatgccatttcatatttataaactagttcaa-ccgctaattttaccaaacactacaaat 205  Q
    ||||||||| |||||||||||||||| | ||||||| ||  ||||||||||||||||| |||||    
T  9195637 atttttatgtcatttcatatttataagcgagttcaatcctttaattttaccaaacactgcaaat 9195700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 5301070 - 5301016
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||||||||| | ||||||||   |||| |||||||||||||||||||||||    
T  5301070 ttttatgccattttacatttataagtcagttgaaccgctaattttaccaaacact 5301016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 11016298 - 11016352
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| | |||||| | |||||| |||||||||||||||||||||||    
T  11016298 ttttatgtcattttacatttatcagctagttgaaccgctaattttaccaaacact 11016352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 28077133 - 28077187
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| | |||||| | |||||| |||||||||||||||||||||||    
T  28077133 ttttatgtcattttacatttatcagctagttgaaccgctaattttaccaaacact 28077187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 14227077 - 14227024
Alignment:
Q  146 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    |||||||||||| | |||||| | |||||| |||||||| ||||||||||||||    
T  14227077 tttatgccattttacatttatcagctagttgaaccgctatttttaccaaacact 14227024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 9749956 - 9749924
Alignment:
Q  77 tatagcttatcattatttatttcaattttaccc 109  Q
    |||||||||||||||||||| ||||||||||||    
T  9749956 tatagcttatcattatttatctcaattttaccc 9749924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 32662298 - 32662366
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    |||| ||| ||||||||||||||||  |||||||| |||||||| |||  ||||||| || ||||||||    
T  32662298 ttttcatgtcatttcatatttataagttagttcaatcgctaattgtacttaacactagaagttcaatca 32662366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 46)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 27679222 - 27679289
Alignment:
Q  138 atattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaat 205  Q
    ||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| |||||| ||||    
T  27679222 atattttttttatgtcatttcatatttataagctagttcaaccgctaattttaccagacactataaat 27679289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 236
Target Start/End: Original strand, 42139531 - 42139614
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctat 236  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||  | ||||||||||  |||| ||||||    
T  42139531 catttcatatttataagctagttcaactgctaattttaccaaacactacaaattgaacaagctagattatccgctatcagctat 42139614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 15967970 - 15968023
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaatt 206  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  15967970 catttcatatttataagctagttcaaccgctaattttaccaagcactacaaatt 15968023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 30804437 - 30804380
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||    
T  30804437 catttcatacttataatctagttcaaccgctaattttacgaaacactacaaattcaat 30804380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 31063099 - 31063200
Alignment:
Q  147 ttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagctt 246  Q
    ||||| ||||||||||||||||| || ||||||||||||| ||| ||||||||||||||||||||   ||| |||||  |||| ||||||||| ||| ||    
T  31063099 ttatgtcatttcatatttataaattacttcaaccgctaatcttatcaaacactacaaattcaatctgttagtttatccgctatcagctataaactagttt 31063198  T
Q  247 at 248  Q
    ||    
T  31063199 at 31063200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 1660283 - 1660221
Alignment:
Q  154 atttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 216  Q
    ||||||||||||||||| |||||||||  |||||  |||||||||||||||||||||||||||    
T  1660283 atttcatatttataaacaagttcaacccttaattccaccaaacactacaaattcaatcaacta 1660221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 13463510 - 13463612
Alignment:
Q  133 tcaatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattag 232  Q
    ||||||||| | ||||||||||||||||||||||||  |||| ||||   ||||||||| ||| | || |||||||||||||||| ||||| ||||| ||    
T  13463510 tcaatatatcacttttatgccatttcatatttataatatagtccaactattaattttactaaataatataaattcaatcaactagcttatccactatcag 13463609  T
Q  233 cta 235  Q
    |||    
T  13463610 cta 13463612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 21721917 - 21721981
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattca 208  Q
    |||||||| ||||| |||||||||| ||| |||||| |||||||||||||||| |||||||||||    
T  21721917 tttttatgtcattttatatttataagctatttcaactgctaattttaccaaactctacaaattca 21721981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 21938036 - 21938108
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaacta 216  Q
    |||||||| ||||| ||||||||||  || |||||||| ||||||||| ||||||| ||||||||||||||||    
T  21938036 tttttatgtcattttatatttataagatatttcaaccgttaattttactaaacactgcaaattcaatcaacta 21938108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 4548994 - 4549057
Alignment:
Q  147 ttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    ||||| |||||||||||||||||| ||| | ||||| |||||||||||||| ||||||||||||    
T  4548994 ttatgtcatttcatatttataaaccagtccgaccgccaattttaccaaacaatacaaattcaat 4549057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 18491955 - 18492037
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactag 217  Q
    |||||||  |||||||| ||||||||||| ||||  ||||||||| |||||||||| |||||| || ||||| ||||||||||    
T  18491955 aatatatcttttttatgtcatttcatattaataagttagttcaactgctaattttatcaaacattataaatttaatcaactag 18492037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 27863867 - 27863945
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattat 222  Q
    ||||| || ||||||| |||||||| |||  ||||||| |||||||| ||||||||||||||||||||| ||| |||||    
T  27863867 tttttttgtcatttcacatttataagctacctcaaccggtaattttatcaaacactacaaattcaatcagctaaattat 27863945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 28249900 - 28249822
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaa 213  Q
    ||||||| ||||||||| ||||||||||||||||  ||| ||||||  ||||||||| | |||||||||||| ||||||    
T  28249900 aatatataatttttatgtcatttcatatttataagttagatcaaccattaattttactacacactacaaatttaatcaa 28249822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 15804446 - 15804500
Alignment:
Q  55 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttaccctt 111  Q
    |||||||||||||||||| |||||  |||||||||||||||| ||||||||||||||    
T  15804446 ataagctaattcaagtagcttata--gcttatcattatttatctcaattttaccctt 15804500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 8752600 - 8752699
Alignment:
Q  138 atattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctata 237  Q
    |||| ||||||||| |||||||||||||||| ||| |||||  ||  ||||||||||| |||||||||||||| |  ||| |||||||||||  ||||||    
T  8752600 atatcatttttatgtcatttcatatttataagctaattcaaatgcagattttaccaaa-actacaaattcaattagttagcttatcaactatctgctata 8752698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 15804508 - 15804576
Alignment:
Q  183 taattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttatcag 251  Q
    ||||||||||||||| |||||||||||||| |||| ||||| ||||| ||||| || | ||||||||||    
T  15804508 taattttaccaaacattacaaattcaatcagctagtttatccactatcagctacaagtcagcttatcag 15804576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 2346912 - 2346865
Alignment:
Q  165 ataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    ||||||||||||||||| ||||||||||||||| ||||||| ||||||    
T  2346912 ataaactagttcaaccgttaattttaccaaacattacaaatccaatca 2346865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 40910051 - 40910148
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaatt---ttaccaaacactacaaattcaatcaactagattatcaactattagctataa 238  Q
    |||||||| ||||||||||||||||  || || |||||||||||   |||| |||||||||||||| ||||  |||| ||||| ||||| ||||||||    
T  40910051 tttttatgtcatttcatatttataaggtactttaaccgctaattttattacaaaacactacaaattgaatctgctagcttatccactatcagctataa 40910148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 44984268 - 44984171
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaatt---ttaccaaacactacaaattcaatcaactagattatcaactattagctataa 238  Q
    |||||||| ||||||||||||||||  || || |||||||||||   |||| |||||||||||||| ||||  |||| ||||| ||||| ||||||||    
T  44984268 tttttatgtcatttcatatttataaggtactttaaccgctaattttattacaaaacactacaaattgaatctgctagcttatccactatcagctataa 44984171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 12238298 - 12238220
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    |||||||  ||||||||| |||||  || || ||| ||||||||||| ||||||||||||||||||||| ||| |||||    
T  12238298 ttttatgttatttcatatatataagttaatttaactgctaattttacaaaacactacaaattcaatcaattagcttatc 12238220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 17487917 - 17487871
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaatttta 190  Q
    |||||||| |||||||||||||||||| | |||||||||||||||||    
T  17487917 tttttatgtcatttcatatttataaaccatttcaaccgctaatttta 17487871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 33625693 - 33625771
Alignment:
Q  153 catttcatatttataaa-ctagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactatt 230  Q
    ||||||||||||||||| ||| ||||  |||||||| ||||||||||||||||||||| || |||| || ||| |||||    
T  33625693 catttcatatttataaagctaattcagtcgctaattataccaaacactacaaattcaaccagctagcttgtcagctatt 33625771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 42034570 - 42034623
Alignment:
Q  182 ctaattttaccaaacactacaaattcaatcaactagattatcaactattagctat 236  Q
    ||||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||    
T  42034570 ctaattttaccaaacaccacaaattcaatcaactag-ttatccactatcagctat 42034623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 6176501 - 6176578
Alignment:
Q  146 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatc 223  Q
    |||||| ||||| ||| |||| ||||| ||||| ||||||||||| ||||||||| ||||||||| || | |||||||    
T  6176501 tttatgtcattttatacttatcaactaattcaatcgctaattttaacaaacactagaaattcaattaaattgattatc 6176578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 42034457 - 42034511
Alignment:
Q  55 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttaccctt 111  Q
    |||||||||||||||||| |||||  ||||||||||| |||| ||||||||||||||    
T  42034457 ataagctaattcaagtagattata--gcttatcattacttatctcaattttaccctt 42034511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 42139427 - 42139477
Alignment:
Q  57 aagctaattcaagtagtttatatagcttatcattatttatttcaattttaccc 109  Q
    |||||||||||||||| |||||  |||||||||||||||| ||||||||||||    
T  42139427 aagctaattcaagtagattata--gcttatcattatttatctcaattttaccc 42139477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 229
Target Start/End: Original strand, 4751783 - 4751874
Alignment:
Q  144 tttttatgccatttcatatttataaacta------gttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactat 229  Q
    |||||||| |||||||||||||||| |||      ||||||| | ||| |||||||||||||||||||||||||  || |||||||| ||||    
T  4751783 tttttatgtcatttcatatttataagctaagcctagttcaacagttaactttaccaaacactacaaattcaatcggctggattatcagctat 4751874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 6472188 - 6472112
Alignment:
Q  135 aatatattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 211  Q
    ||||||| ||||||| | |||||||||||||| |  |||||||| |  ||||||||||||| || ||||||||||||    
T  6472188 aatatatcatttttaggtcatttcatatttattatttagttcaatcattaattttaccaaaaaccacaaattcaatc 6472112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 9613749 - 9613821
Alignment:
Q  138 atattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaat 210  Q
    |||||||||| ||| ||||||||||||||||  ||||||| ||  | ||||||||||||| || |||||||||    
T  9613749 atattattttcatgtcatttcatatttataagatagttcagccattgattttaccaaacaatataaattcaat 9613821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 33651226 - 33651167
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    |||||||||||| |||  ||||||||| ||||||||||| ||| |||||||||| |||||    
T  33651226 catttcatatttgtaagttagttcaactgctaattttactaaaaactacaaattaaatca 33651167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 7510883 - 7510829
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| |||||||| | |||||| |||||||||||||| ||||||||    
T  7510883 ttttatgtcattttatatttatcagctagttgaaccgctaattttatcaaacact 7510829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 38843476 - 38843530
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| | |||||| | |||||| |||||||||||||||||||||||    
T  38843476 ttttatgtcattttacatttatcagctagttgaaccgctaattttaccaaacact 38843530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 38880241 - 38880187
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  38880241 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 38880187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 44276424 - 44276478
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  44276424 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacact 44276478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 44810208 - 44810305
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattagcttatcag 251  Q
    |||| |||| |||||| |||||||| |||||| ||||||||||  ||||||||||||||| |||| |||||  || | | ||||||  |||||||||||    
T  44810208 cattgcatacttataagctagttca-ccgctagttttaccaaatgctacaaattcaatcagctagcttatccgctgtcatctataagatagcttatcag 44810305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 2759507 - 2759560
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaaca 197  Q
    |||||||| ||||| | |||||| | |||||| |||||||||||||||||||||    
T  2759507 tttttatgtcattttacatttatcagctagttgaaccgctaattttaccaaaca 2759560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 9263804 - 9263751
Alignment:
Q  146 tttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    |||||| ||||| |||||||| | |||||| |||||||| ||||||||||||||    
T  9263804 tttatgtcattttatatttatcagctagttgaaccgctatttttaccaaacact 9263751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 11235756 - 11235695
Alignment:
Q  139 tattatttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacacta 200  Q
    ||||||||||  | ||||||||||| ||||||||||||||  | ||||||||||||| ||||    
T  11235756 tattattttttcgtcatttcatattcataaactagttcaatagataattttaccaaatacta 11235695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 27679148 - 27679185
Alignment:
Q  77 tatagcttatcattatttatttcaattttacccttgta 114  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  27679148 tatagcttatcattatttatctcaattttacccatgta 27679185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 36514644 - 36514689
Alignment:
Q  171 tagttcaaccgctaattttaccaaacactacaaattcaatcaacta 216  Q
    ||||||||||  ||||||||  ||||||||||||||||||||||||    
T  36514644 tagttcaaccattaattttatgaaacactacaaattcaatcaacta 36514689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 5946638 - 5946570
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    |||||||| ||||||||||||| || ||| ||||||  ||||||| || || ||||||| |||||||||    
T  5946638 tttttatgtcatttcatatttacaagctacttcaacaactaatttgactaagcactacatattcaatca 5946570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 14477662 - 14477590
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactag 217  Q
    ||||||| ||||||||||||||||  | ||||||||| |  |||||| ||||||| |||||| ||| ||||||    
T  14477662 ttttatgtcatttcatatttataagtttgttcaaccgttcgttttactaaacactgcaaatttaataaactag 14477590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 18030310 - 18030354
Alignment:
Q  154 atttcatatttataaactagttcaaccgctaattttaccaaacac 198  Q
    ||||||| ||||||| |||||| ||||||||| ||||||||||||    
T  18030310 atttcatgtttataagctagtttaaccgctaactttaccaaacac 18030354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 31854810 - 31854878
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatca 212  Q
    |||| ||| |||||||||||||||||||||||||||   | ||||||||||| ||| |  |||||||||    
T  31854810 ttttcatgtcatttcatatttataaactagttcaacaatttattttaccaaagactgcgcattcaatca 31854878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 40909954 - 40910007
Alignment:
Q  55 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttaccct 110  Q
    ||||||||||||||||||||  ||||| |||||| | ||||| |||||||||||||    
T  40909954 ataagctaattcaagtagtt--tataggttatcactttttatctcaattttaccct 40910007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 44810100 - 44810157
Alignment:
Q  55 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttacccttgta 114  Q
    |||||||||||||||||| ||||||   ||| |||| ||||| |||||||||||||||||    
T  44810100 ataagctaattcaagtagcttatat--gttaccattttttatctcaattttacccttgta 44810157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 49838 - 49744
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataa 238  Q
    |||| ||| |||||||||||||| |||||  ||| || |||||||||||||| ||||||||| ||||||||||| ||||| ||||| ||||||||    
T  49838 ttttcatgtcatttcatatttatcaactaagtcagccactaattttaccaaatactacaaatccaatcaactagtttatccactatgagctataa 49744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 49935 - 49868
Alignment:
Q  55 ataagctaattcaagtagtttatatagcttatcattatttatttcaattttacccttgtattcataattg 124  Q
    |||||||||||||||||| |||||  |||||||| | ||||| ||||||||||||||| | || ||||||    
T  49935 ataagctaattcaagtagcttata--gcttatcactttttatctcaattttacccttgcaatcttaattg 49868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 338976 - 338908
Alignment:
Q  153 catttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagatta 221  Q
    ||||| |||||||||| ||| |||||||||||| | || ||||||||||||||||||||| ||||||||    
T  338976 cattttatatttataagctacttcaaccgctaactatatcaaacactacaaattcaatcagctagatta 338908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 237843 - 237893
Alignment:
Q  161 atttataaactagttcaaccgctaattttaccaaacactacaaattcaatc 211  Q
    |||||| || ||||||||||| ||||||||||||||||| ||||| |||||    
T  237843 atttatcaattagttcaaccgttaattttaccaaacacttcaaatccaatc 237893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 9533 - 9479
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| | |||||||| |||||| |||||||||||||||||||||||    
T  9533 ttttatgtcattttacatttataagctagttgaaccgctaattttaccaaacact 9479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 250
Target Start/End: Original strand, 8074 - 8179
Alignment:
Q  144 tttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacactacaaattcaatcaactagattatcaactattagctataaattag 243  Q
    |||||||| |||||||||||| |||  |||| ||||  ||||||||| |||||||||||||||||||||| ||  ||||| | ||| | || |||| |||    
T  8074 tttttatgtcatttcatattt-taaggtagtgcaacaactaattttatcaaacactacaaattcaatcaattaacttatccattatcaactgtaaaatag 8172  T
Q  244 cttatca 250  Q
    |||||||    
T  8173 cttatca 8179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 192721 - 192775
Alignment:
Q  145 ttttatgccatttcatatttataaactagttcaaccgctaattttaccaaacact 199  Q
    ||||||| ||||| | |||||| | |||||| |||||||||||||||||||||||    
T  192721 ttttatgtcattttacatttatcagctagttgaaccgctaattttaccaaacact 192775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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