View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4613_low_3 (Length: 474)
Name: NF4613_low_3
Description: NF4613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4613_low_3 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0268 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 5 - 474
Target Start/End: Complemental strand, 19456945 - 19456477
Alignment:
| Q |
5 |
cagaatcggtctgggtttggggcaagaaggggttcttctggaaaagcaggcatgtttggtttgggaaattgaaattgaaagnnnnnnngtgattattctg |
104 |
Q |
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| T |
19456945 |
cagaatcggtctgggtttggggcaagaaggggttcttctggaaaagcaggcatgtttggtttgggaaattgaaattgaaagaaaaaa-gtgattattttg |
19456847 |
T |
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| Q |
105 |
ataggttgaagtgttgtgagtaagaatgaaggggtgaagggtttaaataatgatttctgagtggaaataggagcgggtgaatttgaaaattttggggtg- |
203 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||| ||||||||||| | |
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| T |
19456846 |
ataggttgaagtgttgtgagtaagaatgaagaggtgaagggtttaaataatgattttttagtggaaataggagcgggagaatttgtaaattttggggggg |
19456747 |
T |
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| Q |
204 |
ttttggatttgaaaaagtgtgcgggagaagaaggaaattggaaactacgggggtggattttgaaatgaatttggggaagctttcatgagaagatttatct |
303 |
Q |
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| T |
19456746 |
ttttggatttggaaaagcgtgcgggagaagaaggaaattggaaactacgcgggtgaattttgaaatgaatttggggaagctttcatgagaagatttatct |
19456647 |
T |
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| Q |
304 |
ggtggagggtagtttggggagagaaaaatgtggggaaaacggtattttggggttttgaggagggaaaaatcagggataaggatgaaatggtgcgttgggg |
403 |
Q |
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| T |
19456646 |
ggtggagggtagtttggggagagaaaaatgtggggaaaacggtattttggggttttgaggagggaaaaatcagggataaggatgaaatggtgcgttggga |
19456547 |
T |
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| Q |
404 |
tttttggaataagtttgaaaattttgggttttttgatcggtggtaaaatttgtgacgtggtagtgtttaat |
474 |
Q |
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| T |
19456546 |
tttttgg-attagtttgaaaatttggggttttttgatcggtggtaaaatttgtgacgtggtagtgtttaat |
19456477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 22434 - 22356
Alignment:
| Q |
5 |
cagaatcggtctgggtttggggcaagaaggggttcttctggaaaagcaggcatgtttgg-tttgggaaattgaaattga |
82 |
Q |
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| T |
22434 |
cagaatcggtctgggtttggtgcgagaagtggttcttctggaaaagcaggcatgtttggttttaggaaattgaaattga |
22356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 22193 - 22135
Alignment:
| Q |
241 |
ttggaaactacgggggtggattttgaaatgaatttggggaagctttcatgagaagattt |
299 |
Q |
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| T |
22193 |
ttggaaagtacgcgggtgaattttgaaaggaaattggggaagctttgatgagaagattt |
22135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 22237 - 22191
Alignment:
| Q |
169 |
aaataggagcgggtgaatttgaaa-attttggggtgttttggatttg |
214 |
Q |
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| T |
22237 |
aaataggagcgggtgaatttgaaattttttggggggttttggatttg |
22191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 10197654 - 10197732
Alignment:
| Q |
5 |
cagaatcggtctgggtttggggcaagaaggggttcttctggaaaagcaggcatgtttgg-tttgggaaattgaaattga |
82 |
Q |
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| T |
10197654 |
cagaatcggtctgggtttggtgcgagaagtggttcttctggaaaagcaggcatgtttggttttaggaaattgaaattga |
10197732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 10197896 - 10197954
Alignment:
| Q |
241 |
ttggaaactacgggggtggattttgaaatgaatttggggaagctttcatgagaagattt |
299 |
Q |
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| T |
10197896 |
ttggaaagtacgcgggtgaattttgaaaggaaattggggaagctttgatgagaagattt |
10197954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 10197852 - 10197898
Alignment:
| Q |
169 |
aaataggagcgggtgaatttgaaa-attttggggtgttttggatttg |
214 |
Q |
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| T |
10197852 |
aaataggagcgggtgaatttgaaattttttggggggttttggatttg |
10197898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 25026146 - 25026220
Alignment:
| Q |
5 |
cagaatcggtctgggtttggggcaagaaggggttcttctggaaaagcaggca-tgtttggtttgggaaattgaaa |
78 |
Q |
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| T |
25026146 |
cagaatcggtctgggtttggagcgagaagaggttcttctgggaaagaaggcattgtttggttttgggaattgaaa |
25026220 |
T |
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