View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4613_low_4 (Length: 373)
Name: NF4613_low_4
Description: NF4613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4613_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 144 - 365
Target Start/End: Complemental strand, 7006758 - 7006525
Alignment:
| Q |
144 |
ctcagttcctaatcaaagtcataatttttccaaactagaaaaacaaataagaaacaacccagtattaaattattgnnnnnnncacaattgaatcaaca-- |
241 |
Q |
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| T |
7006758 |
ctcagttcctaatcaaagtcacaatttttctaaactagaaaaacaaataaaaaacaacccagtattaaattattgtttttttcacaattcaatcaacaca |
7006659 |
T |
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| Q |
242 |
atcataatcacaacgagaaattaaaaaacc----------ccaattgattaaaagtgaaaatttgaagaattacctgcgggagtctttctactgccgaac |
331 |
Q |
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| T |
7006658 |
atcataatcacaacgagaaaataaaaaaaataaaaaaaaaccaattgattaaaagtgaaaatttgaagaattacctgcgggagtctttctactgccgaac |
7006559 |
T |
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| Q |
332 |
agaaaactcatattgaatgcttcggtcctatgct |
365 |
Q |
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| T |
7006558 |
agaaaactcatattgaatgcttcgctcctatgct |
7006525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 7006880 - 7006799
Alignment:
| Q |
21 |
actgcaatccttgtctttccttttcaatttctctaatagacttatcaagcatccttttattttccctcaaaagctctgttaa |
102 |
Q |
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| T |
7006880 |
actgcaatccttgtctttccctttcaatttctctaatagacttatcaagcatccttttattttccctcaaaagctctgttaa |
7006799 |
T |
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