View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4614-Insertion-1 (Length: 1079)
Name: NF4614-Insertion-1
Description: NF4614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4614-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 518; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 6 - 535
Target Start/End: Original strand, 43415754 - 43416283
Alignment:
| Q |
6 |
caatttagaatattatcgttcatgtgaccaccaatcttgtggacacttgcttcttttaaaaatatggaacctatgtcattgattggtaggaagaaataaa |
105 |
Q |
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| T |
43415754 |
caatttagaattttatcgttcatgtcaccaccaatcttgtggacacttgcttcttttaaaaatatggaacctatgtcattgattggtaggaagaaataaa |
43415853 |
T |
|
| Q |
106 |
atgaaattgagtgggaatgaaataaggatgaagcttaataaagagtggcaaagggaagtaagtagtaacaaataactgaataagagagagtggtcacaac |
205 |
Q |
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| T |
43415854 |
atgaaattgagtgggaatgaaataaggatgaagcttaataaagagtggcaaagggaagtaagtagtaacaaataactgaataagagagagtggtcacaac |
43415953 |
T |
|
| Q |
206 |
tgattttgactgtaaatagaacagttctctcttacccattttctaataacaaagtcaaccctcaacttttcactggacatgtgtcgaactgtctatattt |
305 |
Q |
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| T |
43415954 |
tgattttgactgtaaatagaacagttctctcttacccattttctaataacaaagtcaaccctcaacttttcactggacatgtgtcgaactgtctatattt |
43416053 |
T |
|
| Q |
306 |
gatttacatggaatggaacaatattgactcattaaccaagttgtatgatggcaatgttgttgaaggcaacatccatgaatatcagtagtgtctttttcta |
405 |
Q |
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| T |
43416054 |
gatttacatggaatggaacaatattgactcattaaccaagttgtatgatggcaatgttgttgaaggcaacatccatgaatatcagtagtgtctttttcta |
43416153 |
T |
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| Q |
406 |
cttgtttttgcaacatgttcttcaatagattgctttgattttgcttatccatccagttatcgactatgaaacatcaacaccggacacagacacgcatata |
505 |
Q |
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| T |
43416154 |
cttgtttttgcaacatgttcttcaatagattgctttgattttgcttatccatccagttatcgactatgaaacatcaacaccggacacagacacgcatata |
43416253 |
T |
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| Q |
506 |
acgctttcaatctgaaatgttagtgttata |
535 |
Q |
| |
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| T |
43416254 |
acgctttcaatctgaaatgttagtgctata |
43416283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 531 - 1036
Target Start/End: Original strand, 43416303 - 43416809
Alignment:
| Q |
531 |
ttataagagaatatgagtcaacaaaaattgatgtattcttctaaagaaaagcaaaagtcgacggttcttagcttcccaattgcatggccaattacatgca |
630 |
Q |
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| T |
43416303 |
ttataagagaatatgagtcaacaaaaattgatgtattcttctaaagaaaagcaaaagtcgacggttcttagcttcccaattgcatggccaattacatgca |
43416402 |
T |
|
| Q |
631 |
acacctcctcaagtgctacattcttgaatannnnnnnactctagaaactgtagtaagatatagtgcacatagaataacaaacaggggaataatcattcat |
730 |
Q |
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| T |
43416403 |
acacctcctcaagtgctacattcttgaatatttttttactctagaaactgtagtaagatatagtgcacatagaataacaaacaggggaataaccattcat |
43416502 |
T |
|
| Q |
731 |
gtaaccaaaagaggaaagaaaaataagagggaaaactttcaatgattgacataaaatttttgtattgcatctcagtggtcctcgtcatttctttctattg |
830 |
Q |
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| T |
43416503 |
gtaaccaaaagaggaaagaaaaataagagggaaaactttcaatgattgacataaaatttttgtattgcatctcagtggtcctcgtcatttctttctattg |
43416602 |
T |
|
| Q |
831 |
caatcacagaaacaagtgtagttggctcctatcataggagaaagaagtgttgcacaagagattctttatgcattctttcctttattcctaattcttatgc |
930 |
Q |
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| T |
43416603 |
caatcacagaaacaagtgtagttggctcctatcataggagaaagaagtgttgcacaagagattctttatgcattctttcctttattcctaattcttatgc |
43416702 |
T |
|
| Q |
931 |
tgccatactgaagtgac-agac-atagagtattatatctgaagcacagcttaactaaccctctcccacactatgtatccacaaacaccaatcggactaac |
1028 |
Q |
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| T |
43416703 |
tgccatgctgaagtgacaagacaatagagtattatatctgaagcacagcttaactaaccctctcccacactatgtat-cacaaacaccaatcggactaac |
43416801 |
T |
|
| Q |
1029 |
catgtctc |
1036 |
Q |
| |
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|||||||| |
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| T |
43416802 |
catgtctc |
43416809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 668 - 878
Target Start/End: Original strand, 43401755 - 43401966
Alignment:
| Q |
668 |
actctagaaactgtagtaagatatagtgcacatagaataacaaacaggggaataatcattcatgtaaccaaaagagg--aaagaaaaataagagggaaaa |
765 |
Q |
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|||||| ||||| ||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||| |
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| T |
43401755 |
actctataaactatagtaagatatggtgcacatagaataacaaagaggggaataatcaatcatgtaaccaaaagagggaaaaaaaatataagagggaaaa |
43401854 |
T |
|
| Q |
766 |
ctttcaatgattgacataaaatttttgtattgcatctcagtggtcctcgtcatttctttctattgcaatcacagaaacaagtgtagttggctcctatcat |
865 |
Q |
| |
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|||||||||||||||||| | ||||| | ||||||| ||||||||||||||||||||||| |||||||||| ||| ||||||| |||||||||||||| |
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| T |
43401855 |
ttttcaatgattgacataagaattttgcactgcatcttggtggtcctcgtcatttctttcta-tgcaatcacaaaaataagtgtatttggctcctatcat |
43401953 |
T |
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| Q |
866 |
aggagaaagaagt |
878 |
Q |
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| T |
43401954 |
aggagaaagaagt |
43401966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 38 - 289
Target Start/End: Original strand, 43400989 - 43401230
Alignment:
| Q |
38 |
aatcttgtggacacttgcttcttttaaaaatatggaacctatgtcattgattggtaggaagaaataaaatgaaattgagtgggaatgaaataaggatgaa |
137 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43400989 |
aatcttgtggacactcacttcttttaaaaataaggaacctatgtcattgattggtaggaagaaatgaaatgaaattgagtgggaatgaaataaggatgaa |
43401088 |
T |
|
| Q |
138 |
gcttaataaagag--tggcaaagggaagtaagtagtaacaaataactgaataagagagagtggtcacaactgattttgactgtaaatagaacagttctct |
235 |
Q |
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| T |
43401089 |
gcttaa-aaagaggaaggccaaggg----aagtagtaaca--------aaaaagagagagtggtcacaactgattttgaatttaaacagaacggttccct |
43401175 |
T |
|
| Q |
236 |
cttacccattttctaataacaaagtcaa-ccctcaacttttcactggacatgtgt |
289 |
Q |
| |
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|||| | ||||| ||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
43401176 |
cttatctattttttaataacaaagtcaacccctcaacttttcattggacatgtgt |
43401230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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