View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4614-Insertion-10 (Length: 426)
Name: NF4614-Insertion-10
Description: NF4614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4614-Insertion-10 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 8 - 404
Target Start/End: Original strand, 39090261 - 39090660
Alignment:
| Q |
8 |
gaaatggtagataggactggtttacttcttcctggacatcaacaagaccttgtttcaaaggtagcggctgcctcgagaggcccaaccattttggtcttaa |
107 |
Q |
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| T |
39090261 |
gaaatggtagataggactggtttacttcttcctggacatcaacaagaccttgtttcaaaggtagcggctgcctcgagaggcccaaccattttggtcttaa |
39090360 |
T |
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| Q |
108 |
tgtctggtggtcctatagatataacttttgcaaagaatgatcctcgaattataggcatcttgtgggctggttatcctggtcaagccggtggtgctgccat |
207 |
Q |
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| T |
39090361 |
tgtctggtgggcctatagatataacttttgcaaagaatgatcctcgaattatgggcattttgtgggctggttatcctggtcaagccggtggtgctgccat |
39090460 |
T |
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| Q |
208 |
tgcggatatattgtttggaaccgctaacccaggtttgtaatgaatctattctttttaagggag---cttttcacctacgattcttaaaaatcgttccagt |
304 |
Q |
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| T |
39090461 |
tgcggatatattgtttggaaccactaacccaggtttgtaatgaatctatcctttttaagggagcttcttttcacctacgattcttaaaaatcgttccagt |
39090560 |
T |
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| Q |
305 |
ctggattcacccaactgaacacaagaaaaatcattatcttatatgtctttatccatctagaggagcgacgatttaagaaattgttggggctaaatgtaac |
404 |
Q |
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| T |
39090561 |
ccggatttacccaactggacacaagaaaaaacattatcttatatgtctttatccatttagaggagcgtcaatttaagaaattgttggggctaaatgtaac |
39090660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 44715149 - 44714921
Alignment:
| Q |
17 |
gataggactggtttacttcttcctggacatcaacaagaccttgtttcaaaggtagcggctgcctcgagaggcccaaccattttggtcttaatgtctggtg |
116 |
Q |
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| T |
44715149 |
gataggactagcttgcttttgcctggacatcaacaagatcttgtttcaaaggtggcagctgcatcaaagggaccaactattttggttttgatgtctggtg |
44715050 |
T |
|
| Q |
117 |
gtcctatagatataacttttgcaaagaatgatcctcgaattataggcatcttgtgggctggttatcctggtcaagccggtggtgctgccattgcggatat |
216 |
Q |
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| T |
44715049 |
ggcctgtggacattacttttgcaaagaatgaccccaaagttgctggcatattgtgggcgggttatccaggccaagctggtggtgctgcaattgctgacat |
44714950 |
T |
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| Q |
217 |
attgtttggaaccgctaacccaggtttgt |
245 |
Q |
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|| |||||||| |||| ||||||||||| |
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| T |
44714949 |
tttatttggaactgctagcccaggtttgt |
44714921 |
T |
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