View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4614-Insertion-11 (Length: 410)

Name: NF4614-Insertion-11
Description: NF4614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4614-Insertion-11
NF4614-Insertion-11
[»] scaffold0025 (1 HSPs)
scaffold0025 (8-369)||(18798-19159)
[»] chr7 (30 HSPs)
chr7 (248-370)||(4049915-4050036)
chr7 (249-360)||(36580274-36580384)
chr7 (247-363)||(19645003-19645117)
chr7 (248-360)||(17876361-17876472)
chr7 (248-366)||(18504438-18504554)
chr7 (252-369)||(20185111-20185226)
chr7 (248-360)||(14247293-14247404)
chr7 (248-360)||(28350115-28350227)
chr7 (248-370)||(11373846-11373966)
chr7 (251-360)||(8074077-8074187)
chr7 (239-361)||(3247376-3247495)
chr7 (247-358)||(23826224-23826338)
chr7 (248-370)||(15348151-15348273)
chr7 (273-370)||(5172717-5172815)
chr7 (249-370)||(6726258-6726376)
chr7 (262-367)||(18186452-18186557)
chr7 (320-359)||(23746093-23746132)
chr7 (248-360)||(28785755-28785868)
chr7 (283-352)||(40872200-40872269)
chr7 (248-351)||(21505614-21505716)
chr7 (249-295)||(21748082-21748128)
chr7 (331-369)||(28472573-28472611)
chr7 (249-345)||(20505229-20505323)
chr7 (248-325)||(46266491-46266568)
chr7 (284-352)||(5172546-5172614)
chr7 (273-349)||(24432982-24433057)
chr7 (331-367)||(35250316-35250352)
chr7 (249-360)||(41243846-41243958)
chr7 (252-360)||(48058864-48058972)
chr7 (249-341)||(48059168-48059260)
[»] chr5 (27 HSPs)
chr5 (252-370)||(3333695-3333812)
chr5 (250-370)||(32391720-32391839)
chr5 (248-370)||(40276017-40276139)
chr5 (248-366)||(20512396-20512514)
chr5 (252-370)||(3999089-3999206)
chr5 (247-370)||(12406039-12406161)
chr5 (248-370)||(6130254-6130375)
chr5 (248-366)||(36798373-36798491)
chr5 (247-370)||(2974826-2974950)
chr5 (252-360)||(28446207-28446315)
chr5 (247-369)||(35166487-35166609)
chr5 (299-368)||(30603662-30603731)
chr5 (303-370)||(21066533-21066600)
chr5 (247-325)||(34319958-34320035)
chr5 (250-348)||(35877495-35877592)
chr5 (247-348)||(24779489-24779590)
chr5 (247-311)||(20629734-20629798)
chr5 (249-360)||(25363825-25363936)
chr5 (251-363)||(37897918-37898029)
chr5 (250-342)||(39574240-39574331)
chr5 (252-352)||(43098031-43098131)
chr5 (248-311)||(18403242-18403304)
chr5 (249-295)||(586680-586726)
chr5 (313-367)||(19340824-19340878)
chr5 (248-366)||(24405694-24405812)
chr5 (300-369)||(27904536-27904604)
chr5 (320-370)||(31080674-31080723)
[»] scaffold0062 (1 HSPs)
scaffold0062 (248-369)||(46075-46196)
[»] chr4 (33 HSPs)
chr4 (247-360)||(53924745-53924857)
chr4 (247-370)||(35393862-35393985)
chr4 (247-360)||(6614845-6614956)
chr4 (252-366)||(14449276-14449390)
chr4 (248-370)||(23759560-23759680)
chr4 (252-370)||(3658118-3658235)
chr4 (252-368)||(10059685-10059802)
chr4 (249-360)||(50769566-50769675)
chr4 (246-370)||(2837093-2837215)
chr4 (248-363)||(23759774-23759888)
chr4 (248-369)||(35383764-35383881)
chr4 (248-358)||(29697727-29697836)
chr4 (299-368)||(21597451-21597520)
chr4 (262-350)||(6637079-6637166)
chr4 (249-360)||(2181328-2181438)
chr4 (252-370)||(21322710-21322828)
chr4 (249-366)||(2653953-2654071)
chr4 (248-342)||(25909486-25909580)
chr4 (251-369)||(49185753-49185870)
chr4 (308-360)||(18937299-18937351)
chr4 (247-366)||(16292465-16292583)
chr4 (248-295)||(43074615-43074662)
chr4 (249-359)||(6207176-6207286)
chr4 (251-309)||(20118160-20118218)
chr4 (246-360)||(44356601-44356713)
chr4 (299-367)||(21451643-21451709)
chr4 (247-370)||(2016982-2017104)
chr4 (278-357)||(8070849-8070926)
chr4 (252-340)||(37831595-37831683)
chr4 (248-360)||(53312490-53312600)
chr4 (248-295)||(51371463-51371510)
chr4 (300-360)||(4796243-4796302)
chr4 (248-363)||(12719645-12719761)
[»] chr8 (24 HSPs)
chr8 (248-370)||(17070906-17071027)
chr8 (248-370)||(17577245-17577366)
chr8 (248-370)||(41487199-41487321)
chr8 (254-357)||(22192307-22192409)
chr8 (247-367)||(39889770-39889888)
chr8 (246-370)||(23702120-23702246)
chr8 (247-360)||(26824036-26824147)
chr8 (247-360)||(30539194-30539306)
chr8 (249-369)||(9762395-9762513)
chr8 (249-366)||(22846639-22846756)
chr8 (247-357)||(6807171-6807279)
chr8 (247-360)||(20853376-20853487)
chr8 (252-370)||(27545550-27545666)
chr8 (250-352)||(33298548-33298646)
chr8 (264-360)||(14880538-14880633)
chr8 (239-363)||(39889973-39890097)
chr8 (248-363)||(23702335-23702449)
chr8 (299-370)||(37813285-37813355)
chr8 (248-326)||(37813161-37813239)
chr8 (246-335)||(16982623-16982712)
chr8 (252-309)||(37263361-37263418)
chr8 (246-326)||(28349545-28349624)
chr8 (299-370)||(30539037-30539109)
chr8 (304-360)||(41487413-41487469)
[»] chr2 (27 HSPs)
chr2 (249-367)||(15023035-15023152)
chr2 (252-367)||(6510196-6510310)
chr2 (249-366)||(34679290-34679404)
chr2 (246-370)||(19206139-19206261)
chr2 (247-370)||(14489406-14489526)
chr2 (252-367)||(37431734-37431848)
chr2 (249-370)||(31827727-31827845)
chr2 (299-357)||(34100790-34100848)
chr2 (252-370)||(43028987-43029104)
chr2 (252-360)||(35718859-35718966)
chr2 (248-363)||(14489213-14489327)
chr2 (299-370)||(39918635-39918706)
chr2 (246-360)||(32969728-32969844)
chr2 (284-360)||(4576578-4576654)
chr2 (248-351)||(21358316-21358420)
chr2 (246-325)||(5362172-5362251)
chr2 (247-360)||(34761063-34761176)
chr2 (261-351)||(14943548-14943637)
chr2 (249-357)||(37803337-37803446)
chr2 (308-342)||(5008509-5008543)
chr2 (248-362)||(43028793-43028906)
chr2 (249-370)||(16043216-16043339)
chr2 (246-363)||(25333496-25333612)
chr2 (248-360)||(44617942-44618052)
chr2 (247-311)||(20650368-20650432)
chr2 (248-363)||(34679096-34679211)
chr2 (248-336)||(35500039-35500127)
[»] chr3 (36 HSPs)
chr3 (246-370)||(86756-86881)
chr3 (248-357)||(28712668-28712776)
chr3 (246-368)||(3192977-3193098)
chr3 (248-368)||(54718993-54719109)
chr3 (248-368)||(17773169-17773288)
chr3 (248-368)||(19074470-19074589)
chr3 (246-370)||(25154374-25154498)
chr3 (247-370)||(51315678-51315800)
chr3 (247-367)||(4474266-4474383)
chr3 (246-370)||(28204477-28204598)
chr3 (247-370)||(44433053-44433176)
chr3 (247-357)||(38958051-38958159)
chr3 (299-370)||(44436438-44436509)
chr3 (250-360)||(47189599-47189707)
chr3 (249-366)||(14856546-14856663)
chr3 (248-366)||(14340732-14340850)
chr3 (299-365)||(51315544-51315610)
chr3 (247-366)||(46226887-46227003)
chr3 (252-360)||(44585989-44586097)
chr3 (299-363)||(44624830-44624894)
chr3 (252-367)||(43747282-43747396)
chr3 (260-349)||(578425-578512)
chr3 (242-366)||(54464360-54464484)
chr3 (248-363)||(12759502-12759621)
chr3 (293-348)||(791359-791413)
chr3 (303-366)||(8024828-8024891)
chr3 (262-360)||(25248890-25248986)
chr3 (299-370)||(44436592-44436662)
chr3 (250-360)||(27178141-27178250)
chr3 (247-365)||(28944164-28944281)
chr3 (249-311)||(33329611-33329673)
chr3 (247-360)||(35359187-35359300)
chr3 (249-311)||(38177178-38177240)
chr3 (246-295)||(14349376-14349425)
chr3 (284-352)||(28712490-28712557)
chr3 (299-367)||(44585837-44585905)
[»] chr1 (21 HSPs)
chr1 (251-367)||(23891662-23891777)
chr1 (247-360)||(25085397-25085509)
chr1 (248-370)||(39642199-39642321)
chr1 (249-370)||(3377705-3377825)
chr1 (252-352)||(50401583-50401682)
chr1 (247-348)||(7060625-7060727)
chr1 (248-370)||(3377500-3377621)
chr1 (249-358)||(14979006-14979114)
chr1 (248-368)||(17760885-17761006)
chr1 (252-370)||(45739129-45739244)
chr1 (247-360)||(41997638-41997750)
chr1 (248-358)||(46573032-46573142)
chr1 (252-360)||(1096652-1096761)
chr1 (247-368)||(18216684-18216804)
chr1 (247-368)||(23220757-23220877)
chr1 (249-361)||(48319608-48319719)
chr1 (252-342)||(7579666-7579757)
chr1 (247-366)||(25486409-25486528)
chr1 (252-366)||(6569530-6569643)
chr1 (291-360)||(15659022-15659091)
chr1 (247-360)||(45738934-45739046)
[»] chr6 (15 HSPs)
chr6 (247-370)||(10727188-10727311)
chr6 (248-370)||(12766409-12766529)
chr6 (247-360)||(3579593-3579705)
chr6 (247-370)||(10727388-10727510)
chr6 (247-370)||(238928-239047)
chr6 (253-357)||(26601666-26601769)
chr6 (268-358)||(2853448-2853536)
chr6 (251-369)||(28011320-28011436)
chr6 (249-367)||(33401251-33401367)
chr6 (249-370)||(6036644-6036764)
chr6 (262-367)||(32143447-32143552)
chr6 (250-366)||(2840790-2840906)
chr6 (252-360)||(1377411-1377517)
chr6 (252-360)||(1385159-1385265)
chr6 (251-366)||(17248839-17248953)
[»] scaffold0015 (1 HSPs)
scaffold0015 (246-360)||(77064-77178)
[»] scaffold1458 (1 HSPs)
scaffold1458 (246-311)||(1468-1533)
[»] scaffold0372 (1 HSPs)
scaffold0372 (299-367)||(308-374)
[»] scaffold0166 (1 HSPs)
scaffold0166 (247-348)||(21872-21973)
[»] scaffold0041 (1 HSPs)
scaffold0041 (283-352)||(94013-94082)
[»] scaffold0417 (1 HSPs)
scaffold0417 (246-365)||(9534-9654)
[»] scaffold0578 (1 HSPs)
scaffold0578 (308-342)||(3134-3168)
[»] scaffold0137 (1 HSPs)
scaffold0137 (250-360)||(19915-20024)
[»] scaffold0515 (1 HSPs)
scaffold0515 (246-311)||(3636-3701)
[»] scaffold0306 (1 HSPs)
scaffold0306 (246-311)||(3636-3701)
[»] scaffold0150 (1 HSPs)
scaffold0150 (284-360)||(9739-9815)


Alignment Details
Target: scaffold0025 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 8 - 369
Target Start/End: Original strand, 18798 - 19159
Alignment:
Q  8 gattggagaaacatatttcgtttttcttttgcattaaatgcaaaatatatcccatgaagcatgatttatttgacacaaatgatattttgatttccttctt 107  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18798 gattggagaaacatatttcgttattcatttacattaaatgcaaaatatctcccatgaagcatgatttatttgacacaaatgatattttgatttccttctt 18897  T
Q  108 gaatgttatgattgcatcaatcaaaggtaaattaaaattgccccgtattaacagttaattaatcatatacgccattaaaattatttgactgaaatgaaat 207  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18898 gaatgttatgattgcatcaatcaatggtaaattaaaattgccccatattaacagttaattaatcatatacgccattaaaattatttgactgaaatgaaat 18997  T
Q  208 t-aaattgaacttgtaacaatacgtatacatcattaaagataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaa 306  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| | ||||||    
T  18998 taaaattgaacttgtaacaatacgtatacatcattaaagataggcttaatagtagttttcgccccttaactttcacgaagttgtgatttcggctccctaa 19097  T
Q  307 gaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcctcccaaggc 369  Q
    ||||| ||| || |||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  19098 gaaaa-aaactacaaaaccgtcccctaagttttgcaaccgtagcagatttggcctcccaaggc 19159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 248 - 370
Target Start/End: Complemental strand, 4050036 - 4049915
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||| | ||||||||||||| ||| || ||||||| || ||||| |||||||||||    
T  4050036 aggcttaatagcagttttcgccccttaactttcacgaagttgtgattttggccccctaagaaaa-aaactacaaaaccgccccctaaggtttgcaactgt 4049938  T
Q  348 agcagatttggcctcccaaggcc 370  Q
    ||||| ||||||| |||||||||    
T  4049937 agcagttttggccccccaaggcc 4049915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 249 - 360
Target Start/End: Original strand, 36580274 - 36580384
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgta 348  Q
    |||||||||||| |||||| ||| ||||||||| ||||||||||||| |  |||||||||||| ||| || |||||||||| ||||||||||||||||||    
T  36580274 ggcttaatagcagttttcggcccctaactttcacgaagttgtgattttggtcccctaagaaaa-aaactacaaaaccgtcccctaagttttgcaactgta 36580372  T
Q  349 gcagatttggcc 360  Q
    |||| |||||||    
T  36580373 gcagttttggcc 36580384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 247 - 363
Target Start/End: Complemental strand, 19645117 - 19645003
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||| |||||||||||||||||||||||||||||| ||||||| ||||| |  |||||||||||| ||||||  |||  | |||||||||||||||||||    
T  19645117 taggtttaatagcaattttcgccccttaactttcacgaagttgcgattttg-gcccctaagaaaa-aaattaccaaattgccctctaagttttgcaactg 19645020  T
Q  347 tagcagatttggcctcc 363  Q
    |||||| ||||||||||    
T  19645019 tagcagttttggcctcc 19645003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 248 - 360
Target Start/End: Complemental strand, 17876472 - 17876361
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| ||||| |||| ||||||||| ||||||  ||||| | |||| |||||||| |||||| ||||||||||  ||||||||||||||||    
T  17876472 aggcttaatagcagttttcaccccctaactttcacgaagttacgattttggccccttaagaaaa-aaattacaaaaccgtccattaagttttgcaactgt 17876374  T
Q  348 agcagatttggcc 360  Q
    ||||| |||||||    
T  17876373 agcagttttggcc 17876361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 248 - 366
Target Start/End: Complemental strand, 18504554 - 18504438
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    |||||||||| || |||||| ||| ||||||||||||||||| ||||| |  ||||||| ||||  || || ||||||||||  |||||||||||| |||    
T  18504554 aggcttaataacagttttcgtcccctaactttcatgaagttgcgattttgatcccctaaaaaaa--aactaaaaaaccgtcccttaagttttgcaattgt 18504457  T
Q  348 agcagatttggcctcccaa 366  Q
    ||||| |||||||||||||    
T  18504456 agcagttttggcctcccaa 18504438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 369
Target Start/End: Complemental strand, 20185226 - 20185111
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagca 351  Q
    ||||||| | |||||||||| ||||||||| ||||||| ||||| | |||||||| ||||  || || ||||||| |  |||||||||||||||||||||    
T  20185226 ttaatagtagttttcgccccctaactttcacgaagttgcgattttgaccccctaaaaaaa--aactacaaaaccgcctcctaagttttgcaactgtagca 20185129  T
Q  352 gatttggcctcccaaggc 369  Q
    | ||||||| ||||||||    
T  20185128 gttttggccccccaaggc 20185111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 360
Target Start/End: Original strand, 14247293 - 14247404
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| |||||||| | ||||||||| ||||||||||||| | || |||||||||| ||| || ||||||| ||  |||||||||||| |||    
T  14247293 aggcttaatagcagttttcgccacctaactttcacgaagttgtgattttggccgcctaagaaaa-aaactacaaaaccgccccataagttttgcaattgt 14247391  T
Q  348 agcagatttggcc 360  Q
     |||| |||||||    
T  14247392 ggcagttttggcc 14247404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 360
Target Start/End: Original strand, 28350115 - 28350227
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| |||| ||||| ||||||||| ||||||  ||||| | ||||||||||||| ||| || ||||||| || |||||||||||  ||||    
T  28350115 aggcttaatagcagttttagccccctaactttcacgaagttacgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttgcccctgt 28350214  T
Q  348 agcagatttggcc 360  Q
     |||| |||||||    
T  28350215 ggcagttttggcc 28350227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 248 - 370
Target Start/End: Original strand, 11373846 - 11373966
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| |||||||||| ||||||| | ||||||| ||| | | ||||  | ||||| ||| || |||||||  ||||| |||||||||||||    
T  11373846 aggcttaatagcagttttcgccccctaacttttacgaagttgcgatcttgacccctaaggaaaaaaaactacaaaaccgctctctatgttttgcaactgt 11373945  T
Q  348 agcagatttggcctcccaaggcc 370  Q
    |||  ||||||||||||||||||    
T  11373946 agc--atttggcctcccaaggcc 11373966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 251 - 360
Target Start/End: Complemental strand, 8074187 - 8074077
Alignment:
Q  251 cttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaat-tataaaaccgtcctctaagttttgcaactgtag 349  Q
    |||||||||| |||||||||| ||||||||| ||||||  |||||   |||| |||||||| |||  || |||||||||| | |||||||||||||||||    
T  8074187 cttaatagcagttttcgccccctaactttcacgaagttacgattttagccccataagaaaaaaaaactacaaaaccgtccccaaagttttgcaactgtag 8074088  T
Q  350 cagatttggcc 360  Q
    ||| |||||||    
T  8074087 cagttttggcc 8074077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 361
Target Start/End: Complemental strand, 3247495 - 3247376
Alignment:
Q  239 attaaagataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttt 338  Q
    |||||| ||| |||||||| ||||||||| ||| ||||||||| ||||||||||||| | ||||   | |||| ||| || ||||||| |  |||| |||    
T  3247495 attaaaaataagcttaataacaattttcgtcccctaactttcacgaagttgtgattttggcccc---ataaaaaaaactacaaaaccgcctcctaaattt 3247399  T
Q  339 tgcaactgtagcagatttggcct 361  Q
    |||||||||||||| ||||||||    
T  3247398 tgcaactgtagcagttttggcct 3247376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 247 - 358
Target Start/End: Complemental strand, 23826338 - 23826224
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattata---aaaccgtcctctaagttttgcaa 343  Q
    |||||||||||||| |||| | ||| ||||||||| ||||||| ||||| | |||| |||||||| |||   ||   ||| |||||||||||||||||||    
T  23826338 taggcttaatagcagtttttgtcccctaactttcacgaagttgcgattttggccccttaagaaaaaaaaaactacaaaaatcgtcctctaagttttgcaa 23826239  T
Q  344 ctgtagcagatttgg 358  Q
    ||||||||| |||||    
T  23826238 ctgtagcagttttgg 23826224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 370
Target Start/End: Complemental strand, 15348273 - 15348151
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaat-tataaaaccgtcctctaagttttgcaactg 346  Q
    ||||||||||||| | ||| |||| ||||||||| ||||||| ||||| |  || ||||||||| |||  || ||||||| || |||||||||||||| |    
T  15348273 aggcttaatagcagtattcaccccctaactttcacgaagttgcgattttgatcctctaagaaaaaaaaactacaaaaccgccccctaagttttgcaaccg 15348174  T
Q  347 tagcagatttggcctcccaaggcc 370  Q
    |||||| ||||||| |||||||||    
T  15348173 tagcagttttggcc-cccaaggcc 15348151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 370
Target Start/End: Complemental strand, 5172815 - 5172717
Alignment:
Q  273 taactttcatgaagttgtgatttcgcccccctaag-aaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcctcccaaggcc 370  Q
    ||||||| | ||||||| ||||| | ||||||||| |||| ||| || ||||||| || |||||||||||||||||||||| ||||| | |||||||||    
T  5172815 taacttttacgaagttgcgattttgaccccctaaggaaaaaaaactacaaaaccgccccctaagttttgcaactgtagcagttttggtcccccaaggcc 5172717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 370
Target Start/End: Original strand, 6726258 - 6726376
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgta 348  Q
    ||||||||| || ||||||||||| | |||||| ||||||| ||||| | ||| ||||||||| ||| ||||||| |  |||||| |||||| |||||||    
T  6726258 ggcttaataacagttttcgcccct-acctttcacgaagttgcgattttgaccctctaagaaaa-aaactataaaagccccctctatgttttgaaactgta 6726355  T
Q  349 gcagatttggcctcccaaggcc 370  Q
    |||| ||||||| |||||||||    
T  6726356 gcagttttggcc-cccaaggcc 6726376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 367
Target Start/End: Original strand, 18186452 - 18186557
Alignment:
Q  262 ttttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcct 361  Q
    |||||||||| ||||||| ||||||||| ||||| | ||   |||||||| ||| || ||||||| |  ||||||||||||||| |||||| ||||||||    
T  18186452 ttttcgccccctaacttttatgaagttgcgattttggccttttaagaaaaaaaactacaaaaccgcctcctaagttttgcaactatagcagttttggcct 18186551  T
Q  362 cccaag 367  Q
    | ||||    
T  18186552 ctcaag 18186557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 23746132 - 23746093
Alignment:
Q  320 aaaaccgtcctctaagttttgcaactgtagcagatttggc 359  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  23746132 aaaaccgtcctctaagttttgcaactgtagcagttttggc 23746093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 360
Target Start/End: Original strand, 28785755 - 28785868
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaat-tataaaaccgtcctctaagttttgcaactg 346  Q
    |||| |||||||| ||| |||||| ||||||||| ||||||  ||||| | ||||||| ||||| |||  || ||||||| || ||||||||||||||||    
T  28785755 aggcataatagcagtttccgccccctaactttcacgaagttacgattttggccccctaggaaaaaaaaactacaaaaccgccccctaagttttgcaactg 28785854  T
Q  347 tagcagatttggcc 360  Q
    | | || |||||||    
T  28785855 ttgtagttttggcc 28785868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 40872200 - 40872269
Alignment:
Q  283 gaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcag 352  Q
    ||||||| ||||| | ||||||||||||| ||| || ||||||||||  ||||||||| |||||||||||    
T  40872200 gaagttgcgattttgaccccctaagaaaaaaaactacaaaaccgtcccataagttttgtaactgtagcag 40872269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 351
Target Start/End: Original strand, 21505614 - 21505716
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    |||||||||||||  ||||| ||||||||||||| |||||||  |||| | |||  |||||||| ||| || ||||||| || |||||||||| |||| |    
T  21505614 aggcttaatagcagctttcgtcccttaactttcacgaagttgcaatttgggccctttaagaaaaaaaactacaaaaccg-cccctaagttttgtaactat 21505712  T
Q  348 agca 351  Q
    ||||    
T  21505713 agca 21505716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 21748128 - 21748082
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgattt 295  Q
    |||||||||||| |||||||||| ||||||||| ||||||| |||||    
T  21748128 ggcttaatagcagttttcgccccctaactttcacgaagttgcgattt 21748082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 369
Target Start/End: Complemental strand, 28472611 - 28472573
Alignment:
Q  331 ctaagttttgcaactgtagcagatttggcctcccaaggc 369  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  28472611 ctaagttttgcaactgtagcagttttggccccccaaggc 28472573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 345
Target Start/End: Complemental strand, 20505323 - 20505229
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaact 345  Q
    |||||||||||| ||||| |||| || |||| ||||||||| ||||| | |||||||  |||| ||| || ||||||| || ||||||| |||||||    
T  20505323 ggcttaatagcagttttcaccccctagcttttatgaagttgcgattttggcccccta--aaaaaaaactacaaaaccgccccctaagttgtgcaact 20505229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 325
Target Start/End: Complemental strand, 46266568 - 46266491
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaacc 325  Q
    ||||||||||||| |||| || || ||| ||||| |||||||  |||| ||||||||||||||| ||| || ||||||    
T  46266568 aggcttaatagcagttttagctccctaagtttcaagaagttgcaattttgcccccctaagaaaaaaaactacaaaacc 46266491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 5172546 - 5172614
Alignment:
Q  284 aagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcag 352  Q
    |||||||||||| | || |||||||||| ||| |||||||  | ||||||||||||||| |||| ||||    
T  5172546 aagttgtgattttggcctcctaagaaaaaaaactataaaattgccctctaagttttgcatctgtggcag 5172614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 349
Target Start/End: Original strand, 24432982 - 24433057
Alignment:
Q  273 taactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtag 349  Q
    ||||||||| ||||||| ||||| | ||||||||||||| ||  || |||||||||  |||||||||| ||||||||    
T  24432982 taactttcacgaagttgcgattttggccccctaagaaaa-aagctacaaaaccgtctcctaagttttgtaactgtag 24433057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 367
Target Start/End: Complemental strand, 35250352 - 35250316
Alignment:
Q  331 ctaagttttgcaactgtagcagatttggcctcccaag 367  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  35250352 ctaagttttgcaactgtagcagttttggccccccaag 35250316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 360
Target Start/End: Complemental strand, 41243958 - 41243846
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaat-tataaaaccgtcctctaagttttgcaactgt 347  Q
    |||||||||||| ||||||  || |||||||||  |||||  ||||| | | ||||||||||| |||  || |||| || || |||||||||||||||||    
T  41243958 ggcttaatagcagttttcggtccctaactttcacaaagttacgattttggcaccctaagaaaaaaaaactacaaaatcgcccactaagttttgcaactgt 41243859  T
Q  348 agcagatttggcc 360  Q
    || || |||||||    
T  41243858 agtagttttggcc 41243846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 360
Target Start/End: Original strand, 48058864 - 48058972
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagca 351  Q
    ||||||||| ||||  |||| ||| |||||  |||||| ||||| | |||| |||||||| ||| || |||| ||||| |||||||||||  |||| |||    
T  48058864 ttaatagcagttttaaccccctaagtttcaacaagttgagattttggccccttaagaaaaaaaactacaaaatcgtcccctaagttttgcctctgtggca 48058963  T
Q  352 gatttggcc 360  Q
    | |||||||    
T  48058964 gttttggcc 48058972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 341
Target Start/End: Complemental strand, 48059260 - 48059168
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgc 341  Q
    |||||||||||| |||| | ||| ||| ||| | ||||||||||||| | | ||| ||||||| ||| || ||||||| || |||||||||||    
T  48059260 ggcttaatagcagttttaggcccctaagttttaagaagttgtgattttggcaccccaagaaaaaaaactacaaaaccgccccctaagttttgc 48059168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 252 - 370
Target Start/End: Original strand, 3333695 - 3333812
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagca 351  Q
    ||||||||| |||||||||| ||||||||||||||||| ||||| |  |||||||||||| ||| || |||||||||||||||||||||||| |||||||    
T  3333695 ttaatagcagttttcgccccctaactttcatgaagttgcgattttgatcccctaagaaaa-aaactacaaaaccgtcctctaagttttgcaaatgtagca 3333793  T
Q  352 gatttggcctcccaaggcc 370  Q
    | ||||||| |||||||||    
T  3333794 gttttggccccccaaggcc 3333812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 250 - 370
Target Start/End: Original strand, 32391720 - 32391839
Alignment:
Q  250 gcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtag 349  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||| | |||| |||||||| ||| || |||| |  || |||||||||||||||||||    
T  32391720 gcttaatagcagttttcgccccttaactttcacgaagttgtgattttggccccttaagaaaa-aaactacaaaatcaccccctaagttttgcaactgtag 32391818  T
Q  350 cagatttggcctcccaaggcc 370  Q
    ||| ||||||| |||||||||    
T  32391819 cagttttggccccccaaggcc 32391839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 248 - 370
Target Start/End: Original strand, 40276017 - 40276139
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    |||||||||| || |||||| ||| |||||||| |||||||| |||||   ||| ||||||||| |||||| |||| ||||| |||||||||||||||||    
T  40276017 aggcttaatatcagttttcggcccctaactttcgtgaagttgcgattttagccctctaagaaaaaaaattacaaaatcgtcccctaagttttgcaactgt 40276116  T
Q  348 agcagatttggcctcccaaggcc 370  Q
    ||||| ||||||| |||||||||    
T  40276117 agcagttttggccccccaaggcc 40276139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 366
Target Start/End: Complemental strand, 20512514 - 20512396
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaag-aaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    ||||||||||||| |||||||| ||||||||||| ||||||| ||||| |  |||||||| |||| |||||| |||| || ||||||||||||||||||     
T  20512514 aggcttaatagcagttttcgcctcttaactttcacgaagttgcgattttg-gcccctaagaaaaaaaaattacaaaatcgccctctaagttttgcaactt 20512416  T
Q  347 tagcagatttggcctcccaa 366  Q
    |||||| ||||||| |||||    
T  20512415 tagcagttttggccccccaa 20512396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 252 - 370
Target Start/End: Original strand, 3999089 - 3999206
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagca 351  Q
    ||||||||| |||||||||| ||||||||| ||||||| ||||| | ||||||||||||| ||| || |||| || | | ||||||||||||||||||||    
T  3999089 ttaatagcagttttcgccccctaactttcacgaagttgcgattttgaccccctaagaaaa-aaactacaaaatcgacttataagttttgcaactgtagca 3999187  T
Q  352 gatttggcctcccaaggcc 370  Q
    | ||||||| | |||||||    
T  3999188 gttttggcccctcaaggcc 3999206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 370
Target Start/End: Original strand, 12406039 - 12406161
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||||||||||||| |||| ||||| ||||||||   |||||| ||||| | ||||||||||||  ||| || ||||||| || ||||||||||||||||    
T  12406039 taggcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaagaaagaaaactacaaaaccgccccctaagttttgcaactg 12406138  T
Q  347 tagcagatttggcctcccaaggcc 370  Q
    || ||| ||||||| |||||||||    
T  12406139 ta-cagttttggccccccaaggcc 12406161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 370
Target Start/End: Original strand, 6130254 - 6130375
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||||||||||| || |||| |||| |||||||  || | | |||  |||||||| ||| || |||||| ||| |||||||||||||||||    
T  6130254 aggcttaatagcaattttcgctccctaacattcacgaagttgcaatgttggccca-taagaaaaaaaactacaaaaccatcccctaagttttgcaactgt 6130352  T
Q  348 agcagatttggcctcccaaggcc 370  Q
    ||||| ||||||| |||||||||    
T  6130353 agcagttttggccccccaaggcc 6130375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 366
Target Start/End: Complemental strand, 36798491 - 36798373
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| |||| ||||| ||||||||   |||||| ||||| |  |||||||||||| ||| |  ||||||| || |||||||||||||||||    
T  36798491 aggcttaatagcagttttagccccctaactttctcaaagttgcgattttggtcccctaagaaaaaaaactgcaaaaccgccccctaagttttgcaactgt 36798392  T
Q  348 agcagatttggcctcccaa 366  Q
    ||||| ||||||| |||||    
T  36798391 agcagttttggccccccaa 36798373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 370
Target Start/End: Complemental strand, 2974950 - 2974826
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtga-tttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaact 345  Q
    |||||||||||||| |||| ||||| ||||||||| ||||||| || ||| ||||||| | ||||| ||| || | ||||| || |||||||||||| ||    
T  2974950 taggcttaatagcagtttttgccccctaactttcacgaagttgcgattttggccccccaaggaaaaaaaactacagaaccgccccctaagttttgcacct 2974851  T
Q  346 gtagcagatttggcctcccaaggcc 370  Q
    ||||||| ||||||| || ||||||    
T  2974850 gtagcagttttggccccctaaggcc 2974826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 360
Target Start/End: Complemental strand, 28446315 - 28446207
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagca 351  Q
    |||||| || |||||| ||| ||| ||| | ||| ||||||||| |  |||||||||| | ||| || |||||||||| |||||||||||||||||||||    
T  28446315 ttaataacagttttcgtcccctaatttttacgaaattgtgattttggtcccctaagaataaaaactacaaaaccgtcccctaagttttgcaactgtagca 28446216  T
Q  352 gatttggcc 360  Q
    | |||||||    
T  28446215 gttttggcc 28446207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 369
Target Start/End: Complemental strand, 35166609 - 35166487
Alignment:
Q  247 taggcttaatagcaattttcgcccct-taactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaact 345  Q
    |||||||||||||| ||||||||||  ||||||||| ||||||| ||||| |  |||||||||||| ||| || |||| |  || |||||||||||| ||    
T  35166609 taggcttaatagcagttttcgcccccctaactttcacgaagttgcgattttggtcccctaagaaaa-aaactacaaaatcaccccctaagttttgcagct 35166511  T
Q  346 gtagcagatttggcctcccaaggc 369  Q
    ||||||| ||||||| || |||||    
T  35166510 gtagcagttttggcccccaaaggc 35166487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 368
Target Start/End: Original strand, 30603662 - 30603731
Alignment:
Q  299 ccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcctcccaagg 368  Q
    |||| |||||||| |||||| ||||| | || |||||||||||||||||||||| ||||||| |||||||    
T  30603662 ccccttaagaaaaaaaattacaaaactgccccctaagttttgcaactgtagcagttttggccccccaagg 30603731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 370
Target Start/End: Complemental strand, 21066600 - 21066533
Alignment:
Q  303 ctaagaaaagaaattataaaaccg-tcctctaagttttgcaactgtagcagatttggcctcccaaggcc 370  Q
    ||||||||| |||||| ||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  21066600 ctaagaaaaaaaattacaaaaccgctcct-taagttttgcaactgtagcagttttggccccccaaggcc 21066533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 325
Target Start/End: Original strand, 34319958 - 34320035
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaacc 325  Q
    ||||| |||||||| ||||||||||| ||||||| |||||||| ||||| | ||||||||||||| ||| || ||||||    
T  34319958 taggcataatagcagttttcgcccct-aactttcttgaagttgcgattttggccccctaagaaaaaaaactacaaaacc 34320035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 348
Target Start/End: Complemental strand, 35877592 - 35877495
Alignment:
Q  250 gcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgta 348  Q
    ||||||||||| ||||| |||| ||||||||| || ||||  |||| | |||| |||||||| ||| || ||||||| || ||||||||||||||||||    
T  35877592 gcttaatagcagttttcaccccctaactttcacgaggttgcaattttgacccc-taagaaaaaaaactacaaaaccgccccctaagttttgcaactgta 35877495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 24779590 - 24779489
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||||||||||||| |||||| ||| ||||||| |||  |||| ||||| | |||| |||| ||| |||||| |||||||| |  |||||||| ||||||    
T  24779590 taggcttaatagcagttttcgtcccctaacttttatgctgttgcgattttggccccttaagtaaaaaaattacaaaaccgttccataagttttacaactg 24779491  T
Q  347 ta 348  Q
    ||    
T  24779490 ta 24779489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 20629734 - 20629798
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaa 311  Q
    |||| ||||||||| ||||||||||||||||||||  |||||| |||||   |||||||||||||    
T  20629734 taggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaaccccctaagaaaa 20629798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 360
Target Start/End: Original strand, 25363825 - 25363936
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaa-ttataaaaccgtcctctaagttttgcaactgt 347  Q
    |||||||||||| |||| |||||| ||||||  | |||||||||||| | || |||||||||| ||| ||| ||||| |||| ||||||||||||| |||    
T  25363825 ggcttaatagcagttttagcccct-aacttttttaaagttgtgattttggcctcctaagaaaaaaaagttacaaaactgtcccctaagttttgcaattgt 25363923  T
Q  348 agcagatttggcc 360  Q
     | || |||||||    
T  25363924 ggtagttttggcc 25363936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 363
Target Start/End: Complemental strand, 37898029 - 37897918
Alignment:
Q  251 cttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagc 350  Q
    |||||||||| |||| ||||| |||||||    |||||| ||||| | ||||||||||||| ||| || ||||||| || ||||||||||||  ||| ||    
T  37898029 cttaatagcagttttagccccctaactttttcaaagttgcgattttggccccctaagaaaaaaaactacaaaaccg-cccctaagttttgcatatgtggc 37897931  T
Q  351 agatttggcctcc 363  Q
    || ||||||||||    
T  37897930 agttttggcctcc 37897918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 342
Target Start/End: Original strand, 39574240 - 39574331
Alignment:
Q  250 gcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgca 342  Q
    ||||||||||| |||||||||  ||||||||| ||||||| ||||| | | ||||||||||| ||| ||||||| |  || ||||||||||||    
T  39574240 gcttaatagcagttttcgccctctaactttcacgaagttgcgattttggctccctaagaaaa-aaactataaaatcaccccctaagttttgca 39574331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 352
Target Start/End: Original strand, 43098031 - 43098131
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagca 351  Q
    ||||||||| |||||| ||| ||||||| | ||||||| ||||| |  ||| |||||||| ||| || ||||||| |  || ||||||||||||||||||    
T  43098031 ttaatagcagttttcgtcccctaacttttacgaagttgcgattttgatcccgtaagaaaaaaaactacaaaaccgcctccttagttttgcaactgtagca 43098130  T
Q  352 g 352  Q
    |    
T  43098131 g 43098131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 18403304 - 18403242
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaa 311  Q
    ||||||||||||| |||||||| | ||||||||||| ||||| ||||| | |||||||||||||    
T  18403304 aggcttaatagcagttttcgccacctaactttcatg-agttgcgattttggccccctaagaaaa 18403242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 586726 - 586680
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgattt 295  Q
    ||||||||||||||||||| ||  ||||||||||||||||| |||||    
T  586726 ggcttaatagcaattttcgtcctctaactttcatgaagttgcgattt 586680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 367
Target Start/End: Original strand, 19340824 - 19340878
Alignment:
Q  313 aaattataaaaccgtcctctaagttttgcaactgtagcagatttggcctcccaag 367  Q
    |||||| |||| || || |||||||||||||||||||||| ||||||| ||||||    
T  19340824 aaattacaaaatcgccccctaagttttgcaactgtagcagttttggccccccaag 19340878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 366
Target Start/End: Complemental strand, 24405812 - 24405694
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| ||| ||| || ||||  ||| ||| ||| ||||| | | ||||||||||| ||| || ||||| | || |||||||||||||||||    
T  24405812 aggcttaatagcagtttccgcaccctaacaatcacgaacttgcgattttggcaccctaagaaaaaaaactacaaaactgcccactaagttttgcaactgt 24405713  T
Q  348 agcagatttggcctcccaa 366  Q
    || || ||| ||| |||||    
T  24405712 aggagttttagccccccaa 24405694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 369
Target Start/End: Original strand, 27904536 - 27904604
Alignment:
Q  300 cccctaagaaaagaaattataaaaccgtcctc-taagttttgcaactgtagcagatttggcctcccaaggc 369  Q
    |||||||||||| |||||||||||||| |||| ||||||||||||||||| ||| || |||| ||||||||    
T  27904536 cccctaagaaaaaaaattataaaaccg-cctcataagttttgcaactgtaacagtttaggcc-cccaaggc 27904604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 370
Target Start/End: Complemental strand, 31080723 - 31080674
Alignment:
Q  320 aaaaccgtcctctaagttttgcaactgtagcagatttggcctcccaaggcc 370  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||| ||||||    
T  31080723 aaaaccgccctctaagttttgcaactgtagcag-ttttgcctcctaaggcc 31080674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 248 - 369
Target Start/End: Original strand, 46075 - 46196
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    |||||| |||||| |||||||||| ||||||||| ||||||| |||||   ||||||||||||||||| || ||||||| || |||||||||||||||||    
T  46075 aggctttatagcagttttcgccccctaactttcacgaagttgcgattttaaccccctaagaaaagaaactacaaaaccgccccctaagttttgcaactgt 46174  T
Q  348 agcagatttggcctcccaaggc 369  Q
    ||||| ||||||| || |||||    
T  46175 agcagttttggccccctaaggc 46196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 247 - 360
Target Start/End: Original strand, 53924745 - 53924857
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||||||||||| | || ||||||| ||||||||| ||||||||||||| | |||| |||||||| |||||| |||||||||| ||||||||||||||||    
T  53924745 taggcttaatagtagttctcgccccctaactttcacgaagttgtgattttgaccccttaagaaaa-aaattacaaaaccgtcccctaagttttgcaactg 53924843  T
Q  347 tagcagatttggcc 360  Q
    |||||| |||||||    
T  53924844 tagcagttttggcc 53924857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 370
Target Start/End: Complemental strand, 35393985 - 35393862
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||||||||||||| ||||| |||| ||||||||| ||||||| ||||| |  || ||||||||| ||| || ||||||| || ||| |||||| |||||    
T  35393985 taggcttaatagcagttttcaccccctaactttcacgaagttgcgattttggacctctaagaaaaaaaactacaaaaccgccccctaggttttgtaactg 35393886  T
Q  347 tagcagatttggcctcccaaggcc 370  Q
    |||||| ||||||| |||||||||    
T  35393885 tagcagttttggccccccaaggcc 35393862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 360
Target Start/End: Original strand, 6614845 - 6614956
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||||||||||||| |||||| ||||||||||||| ||||||| ||||| | | || |||||||  ||| || |||||| ||| ||||||||||||||||    
T  6614845 taggcttaatagcatttttcgacccttaactttcacgaagttgcgattttggctccttaagaaa--aaactacaaaaccatcccctaagttttgcaactg 6614942  T
Q  347 tagcagatttggcc 360  Q
    |||||| |||||||    
T  6614943 tagcagttttggcc 6614956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 252 - 366
Target Start/End: Original strand, 14449276 - 14449390
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagca 351  Q
    ||||||||| |||||||||| ||||||||| ||||||| ||||| | |||||||||||||  || || ||||| ||||| |||||||||||||| || ||    
T  14449276 ttaatagcagttttcgccccctaactttcacgaagttgagattttggccccctaagaaaaacaactacaaaactgtcctttaagttttgcaactatacca 14449375  T
Q  352 gatttggcctcccaa 366  Q
    | ||||||| |||||    
T  14449376 gttttggccccccaa 14449390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 248 - 370
Target Start/End: Original strand, 23759560 - 23759680
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||| | |||||||||| |||||||||| |||||| ||||| | |||| |||||||| ||| || |||||||||| |||| ||||||||||||    
T  23759560 aggcttaatagtagttttcgccccctaactttcataaagttgcgattttggccccttaagaaaa-aaactacaaaaccgtcccctaaattttgcaactgt 23759658  T
Q  348 agcagatttggcctcccaaggcc 370  Q
    || || ||||||| |||||||||    
T  23759659 agtagttttggcc-cccaaggcc 23759680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 370
Target Start/End: Complemental strand, 3658235 - 3658118
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagca 351  Q
    ||||||||| |||||| ||  ||||||| ||||||||| ||||| |  ||| |||||||| ||| || ||||| ||||||||||||||||||||||||||    
T  3658235 ttaatagcagttttcgtcctctaacttttatgaagttgcgattttgatcccttaagaaaa-aaactaaaaaactgtcctctaagttttgcaactgtagca 3658137  T
Q  352 gatttggcctcccaaggcc 370  Q
    | ||||||  |||||||||    
T  3658136 gttttggctccccaaggcc 3658118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 368
Target Start/End: Original strand, 10059685 - 10059802
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaat-tataaaaccgtcctctaagttttgcaactgtagc 350  Q
    ||||||| | |||||||||||||| |||| |||| || |||||| | ||||||||||||| |||  || ||||||| || ||||||||||||||||||||    
T  10059685 ttaatagtagttttcgccccttaattttcttgaaattatgattttggccccctaagaaaaaaaaactacaaaaccgccccctaagttttgcaactgtagc 10059784  T
Q  351 agatttggcctcccaagg 368  Q
    || ||||| | |||||||    
T  10059785 agttttggtcccccaagg 10059802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 360
Target Start/End: Complemental strand, 50769675 - 50769566
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgta 348  Q
    ||||||| |||| |||||||||| ||||||| | ||||||| ||||| | |||||||| ||||  || |||||||||| |  ||||||||||||||||||    
T  50769675 ggcttaaaagcagttttcgccccctaacttttacgaagttgcgattttggccccctaaaaaaa--aactataaaaccgcctactaagttttgcaactgta 50769578  T
Q  349 gcagatttggcc 360  Q
    |||| |||||||    
T  50769577 gcagttttggcc 50769566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 246 - 370
Target Start/End: Complemental strand, 2837215 - 2837093
Alignment:
Q  246 ataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaa-ttataaaaccgtcctctaagttttgcaac 344  Q
    |||||||||||||   |||||||||||||||||||| |||||||  |||| | ||||||||||||| |||  || ||||||| || ||||||||| |||     
T  2837215 ataggcttaatag---ttttcgccccttaactttcaagaagttgcaattttggccccctaagaaaaaaaagctacaaaaccgccccctaagttttacaat 2837119  T
Q  345 tgtagcagatttggcctcccaaggcc 370  Q
    |||||||| |||||||  ||||||||    
T  2837118 tgtagcagttttggccctccaaggcc 2837093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 248 - 363
Target Start/End: Complemental strand, 23759888 - 23759774
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    |||||||||| |||||||  ||||||||||||||| |||||| ||||| |  |||||||||||| ||| || |||||||||| |||||||||| | ||||    
T  23759888 aggcttaataacaattttaaccccttaactttcataaagttgcgattttggtcccctaagaaaa-aaactacaaaaccgtcccctaagttttgtatctgt 23759790  T
Q  348 agcagatttggcctcc 363  Q
      ||| ||||||||||    
T  23759789 gacagttttggcctcc 23759774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 248 - 369
Target Start/End: Original strand, 35383764 - 35383881
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| |||||||||| ||||||||| ||||||||||||| | ||||||   |||| ||| || |||| || || ||||||||||| |||||    
T  35383764 aggcttaatagcagttttcgccccctaactttcacgaagttgtgattttggccccct---aaaaaaaactacaaaatcg-cccctaagttttgccactgt 35383859  T
Q  348 agcagatttggcctcccaaggc 369  Q
    ||||  ||||||| ||||||||    
T  35383860 agcacttttggccccccaaggc 35383881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 358
Target Start/End: Complemental strand, 29697836 - 29697727
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| ||||| || | ||||||||||||||||| ||||| |  ||| |||||||| ||| || ||| |||||| |||||||||||||||||    
T  29697836 aggcttaatagcagttttcacctcctaactttcatgaagttgcgattttggtccc-taagaaaaaaaactacaaacccgtcccctaagttttgcaactgt 29697738  T
Q  348 agcagatttgg 358  Q
    || || |||||    
T  29697737 agtagttttgg 29697727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 368
Target Start/End: Original strand, 21597451 - 21597520
Alignment:
Q  299 ccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcctcccaagg 368  Q
    ||||||||||||| | | ||||||||||||| |||||||||||||||||||||| ||||||  |||||||    
T  21597451 ccccctaagaaaaaatactataaaaccgtcccctaagttttgcaactgtagcagttttggcaccccaagg 21597520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 350
Target Start/End: Original strand, 6637079 - 6637166
Alignment:
Q  262 ttttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagc 350  Q
    |||| ||||||||||||||| || |||| ||||| |  |||||||||||| |||||| ||||||||||  |||||||||||||||||||    
T  6637079 tttttgccccttaactttcacgatgttgcgattttggtcccctaagaaaa-aaattacaaaaccgtcccttaagttttgcaactgtagc 6637166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 360
Target Start/End: Complemental strand, 2181438 - 2181328
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgta 348  Q
    |||||||||||| |||| || || ||||||| ||||||||| ||||| | | || ||||||||| || || ||||| | |||||||||||||||||||||    
T  2181438 ggcttaatagcactttttgctccctaacttttatgaagttgcgattttggctccttaagaaaag-aactacaaaactgccctctaagttttgcaactgta 2181340  T
Q  349 gcagatttggcc 360  Q
     ||| |||||||    
T  2181339 acagttttggcc 2181328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 370
Target Start/End: Original strand, 21322710 - 21322828
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccg-tcctctaagttttgcaactgtagc 350  Q
    |||||||||||||||||||  ||||||||||||||||| |||||     | ||||||||| ||| || ||||| | |||| |||||||||||||| || |    
T  21322710 ttaatagcaattttcgccctctaactttcatgaagttgcgattttttttctctaagaaaaaaaactacaaaactgctcct-taagttttgcaactttaac 21322808  T
Q  351 agatttggcctcccaaggcc 370  Q
    || |||||||||||||||||    
T  21322809 agttttggcctcccaaggcc 21322828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 249 - 366
Target Start/End: Original strand, 2653953 - 2654071
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccct-aagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    |||||||||||| |||| ||| | ||||||| | ||||||| ||||| | |||||| |||| || ||| || |||||| ||  |||||||||||||||||    
T  2653953 ggcttaatagcagtttttgcctcctaacttttacgaagttgcgattttggcccccttaagataaaaaactacaaaaccatctcctaagttttgcaactgt 2654052  T
Q  348 agcagatttggcctcccaa 366  Q
    ||||| ||||||| |||||    
T  2654053 agcagttttggccccccaa 2654071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 342
Target Start/End: Original strand, 25909486 - 25909580
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgca 342  Q
    ||||||||||||| ||||  |||| |||||||    |||||||||||| | ||||||||||||| ||| |||||||||| || ||||||||||||    
T  25909486 aggcttaatagcagttttaaccccctaacttttccaaagttgtgattttggccccctaagaaaaaaaactataaaaccgccccctaagttttgca 25909580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 251 - 369
Target Start/End: Complemental strand, 49185870 - 49185753
Alignment:
Q  251 cttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagc 350  Q
    |||||||||| ||||| ||||  ||||||||  |||||| ||||| | ||||||||||||| ||| || ||||||| ||  |||||||||||||||| |     
T  49185870 cttaatagcagttttcaccccc-aactttcacaaagttgcgattttggccccctaagaaaaaaaactacaaaaccgccccttaagttttgcaactgttgt 49185772  T
Q  351 agatttggcctcccaaggc 369  Q
    || ||||||| ||||||||    
T  49185771 agttttggccccccaaggc 49185753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 18937299 - 18937351
Alignment:
Q  308 aaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcc 360  Q
    |||| ||||||||||| ||||| |||||||||||||||||||||| |||||||    
T  18937299 aaaaaaaattataaaatcgtcccctaagttttgcaactgtagcagttttggcc 18937351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 366
Target Start/End: Complemental strand, 16292583 - 16292465
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||| |||||| ||||||||||||| ||||||||| ||||||| |||||   ||| | |  |||| ||| || |||| ||||| ||||||||||||||||    
T  16292583 taggtttaataacaattttcgccccctaactttcacgaagttgcgatttttaccctc-agaaaaaaaaactacaaaatcgtcccctaagttttgcaactg 16292485  T
Q  347 tagcagatttggcctcccaa 366  Q
    ||| || ||||||| |||||    
T  16292484 tagtagttttggccccccaa 16292465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 43074615 - 43074662
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgattt 295  Q
    |||||||||||||||||||||||| ||||||||| ||||||| |||||    
T  43074615 aggcttaatagcaattttcgccccctaactttcacgaagttgcgattt 43074662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 359
Target Start/End: Original strand, 6207176 - 6207286
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgta 348  Q
    |||||||||||| ||||||| || |||||||   ||||||||||||| |  | |||||||||| ||| || ||||| | ||  |||||||| ||||||||    
T  6207176 ggcttaatagcagttttcgctccctaactttagcgaagttgtgattttggactcctaagaaaaaaaactacaaaactgccccataagttttacaactgta 6207275  T
Q  349 gcagatttggc 359  Q
    |||| ||||||    
T  6207276 gcagttttggc 6207286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 20118218 - 20118160
Alignment:
Q  251 cttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaa 309  Q
    ||||||||||||||| ||||||||||||| || |||||||||||| | |||| ||||||    
T  20118218 cttaatagcaattttagccccttaacttttataaagttgtgattttggccccttaagaa 20118160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 360
Target Start/End: Complemental strand, 44356713 - 44356601
Alignment:
Q  246 ataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaact 345  Q
    ||||||||||||||| |||| |||||| |||||||   |||||| ||||| | || |||||||||| |||||| ||||||| || ||||||||||||  |    
T  44356713 ataggcttaatagcagttttagcccct-aactttctcaaagttgcgattttggccgcctaagaaaa-aaattacaaaaccgccccctaagttttgcatat 44356616  T
Q  346 gtagcagatttggcc 360  Q
    || |||| |||||||    
T  44356615 gtggcagttttggcc 44356601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 21451709 - 21451643
Alignment:
Q  299 ccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcctcccaag 367  Q
    |||||||||||||  || ||||||||||| | ||||||||| |||||||||||| ||||||| ||||||    
T  21451709 ccccctaagaaaa--aactataaaaccgttccctaagttttacaactgtagcagctttggccccccaag 21451643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 370
Target Start/End: Complemental strand, 2017104 - 2016982
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaag-aaaagaaattataaaaccgtcctctaagttttgcaact 345  Q
    |||||||||||||| |||| ||||| |||||||| | |||||| ||||| | || | |||| |||| ||| || |||||| |||  ||||||||||||||    
T  2017104 taggcttaatagcagttttagccccataactttcctaaagttgcgattttggcctcataagaaaaaaaaactacaaaaccatcc-ataagttttgcaact 2017006  T
Q  346 gtagcagatttggcctcccaaggcc 370  Q
    ||| ||| ||||||| |||||||||    
T  2017005 gtaacagttttggcc-cccaaggcc 2016982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 357
Target Start/End: Complemental strand, 8070926 - 8070849
Alignment:
Q  278 ttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttg 357  Q
    |||| ||||||||||||| | |||||||| ||||  ||||||||||| ||||  |||||||||||| |||||||| ||||    
T  8070926 ttcacgaagttgtgattttgaccccctaaaaaaa--aattataaaactgtcccataagttttgcaattgtagcagttttg 8070849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 37831595 - 37831683
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttg 340  Q
    ||||||||| |||| ||||| ||| ||| | ||||||| ||||| | ||||||||||||| || ||| ||||||| || ||||||||||    
T  37831595 ttaatagcagttttagccccctaagttttaagaagttgcgattttggccccctaagaaaaaaacttacaaaaccgccccctaagttttg 37831683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 360
Target Start/End: Complemental strand, 53312600 - 53312490
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    |||||||||| || ||||| |||| ||||||||| ||||||| ||||| | ||| ||||||||| ||| || ||||| | |||||||| | || ||||||    
T  53312600 aggcttaataacagttttcaccccctaactttcacgaagttgcgattttgacccactaagaaaa-aaactacaaaactg-cctctaagctctgtaactgt 53312503  T
Q  348 agcagatttggcc 360  Q
    ||||| |||||||    
T  53312502 agcagttttggcc 53312490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 51371463 - 51371510
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgattt 295  Q
    ||||||||||||| ||||  ||||||||||||| ||||||||||||||    
T  51371463 aggcttaatagcagttttaaccccttaactttcttgaagttgtgattt 51371510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 360
Target Start/End: Complemental strand, 4796302 - 4796243
Alignment:
Q  300 cccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcc 360  Q
    |||| ||||||| |||||||||||||| ||| ||||||||||| |||| |||| |||||||    
T  4796302 ccccaaagaaaa-aaattataaaaccgccctttaagttttgcacctgtggcagttttggcc 4796243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 363
Target Start/End: Complemental strand, 12719761 - 12719645
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaat-tataaaaccgtcctctaagttttgcaactg 346  Q
    ||||||||||||| ||||  |||| ||||||||   ||||||  |||| | ||||||||||||| |||  || ||||||  || |||||||||||| |||    
T  12719761 aggcttaatagcagttttaaccccctaactttcccaaagttgatattttggccccctaagaaaaaaaaactacaaaaccaccccctaagttttgcatctg 12719662  T
Q  347 tagcagatttggcctcc 363  Q
    | |||| ||||||||||    
T  12719661 tggcagttttggcctcc 12719645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 248 - 370
Target Start/End: Original strand, 17070906 - 17071027
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| |||||||||||||||||||| ||||||| ||||| | |||||||| |||| |||  | |||||| | | |||||||||||||||||    
T  17070906 aggcttaatagcagttttcgccccttaactttcacgaagttgcgattttggccccctaa-aaaaaaaacaacaaaaccattccctaagttttgcaactgt 17071004  T
Q  348 agcagatttggcctcccaaggcc 370  Q
    ||||| ||||||| |||||||||    
T  17071005 agcagttttggccccccaaggcc 17071027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 248 - 370
Target Start/End: Complemental strand, 17577366 - 17577245
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| |||||||||||||||||||| ||||||| ||||| | |||||||| |||| |||  | |||||| | | |||||||||||||||||    
T  17577366 aggcttaatagcagttttcgccccttaactttcacgaagttgcgattttggccccctaa-aaaaaaaacaacaaaaccattccctaagttttgcaactgt 17577268  T
Q  348 agcagatttggcctcccaaggcc 370  Q
    ||||| ||||||| |||||||||    
T  17577267 agcagttttggccccccaaggcc 17577245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 248 - 370
Target Start/End: Original strand, 41487199 - 41487321
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| ||||||||||  || ||||| ||||||| ||||| | ||||||||||||  ||| || ||||||| || |||||||||||||||||    
T  41487199 aggcttaatagcagttttcgcccccgaattttcacgaagttgcgattttgaccccctaagaaacaaaactacaaaaccgccccctaagttttgcaactgt 41487298  T
Q  348 agcagatttggcctcccaaggcc 370  Q
    ||||| ||||||| |||||||||    
T  41487299 agcagttttggccgcccaaggcc 41487321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 254 - 357
Target Start/End: Original strand, 22192307 - 22192409
Alignment:
Q  254 aatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcaga 353  Q
    ||||||| |||||||||||||||||||| ||||||| ||||| | ||||||||||||| |||||| ||||||| ||  || ||||||||||||||||||     
T  22192307 aatagcagttttcgccccttaactttcacgaagttgcgattttggccccctaagaaaa-aaattaaaaaaccgccccttatgttttgcaactgtagcagt 22192405  T
Q  354 tttg 357  Q
    ||||    
T  22192406 tttg 22192409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 367
Target Start/End: Original strand, 39889770 - 39889888
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||||||||||||| |||||||| ||||||||||| |||||||  |||| | |||| |||||||  |||||| |||| ||  |  |||||||||||||||    
T  39889770 taggcttaatagcagttttcgcctcttaactttcacgaagttgcaattttggccccttaagaaa--aaattacaaaatcgctccataagttttgcaactg 39889867  T
Q  347 tagcagatttggcctcccaag 367  Q
    |||||| ||||||||||||||    
T  39889868 tagcagttttggcctcccaag 39889888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 370
Target Start/End: Original strand, 23702120 - 23702246
Alignment:
Q  246 ataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccct---aagaaaagaaattataaaaccgtcctctaagttttgca 342  Q
    ||||||||||||||| ||||||||||||||||||||  |||||  ||||| |  |||||   ||||||| ||| || ||||||| || ||||||||||||    
T  23702120 ataggcttaatagcagttttcgccccttaactttcacaaagttacgattttggtcccctaagaagaaaaaaaactacaaaaccg-cccctaagttttgca 23702218  T
Q  343 actgtagcagatttggcctcccaaggcc 370  Q
    ||||||| || ||||| | |||||||||    
T  23702219 actgtagtagttttggtcccccaaggcc 23702246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 360
Target Start/End: Complemental strand, 26824147 - 26824036
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    ||||| |||||||| ||||| ||||| |||||||| ||||||| ||||| | ||| ||||||||| ||| || ||||| |||| |||||||||||||||     
T  26824147 taggcataatagcagttttcacccct-aactttcacgaagttgcgattttgaccctctaagaaaaaaaactacaaaactgtcc-ctaagttttgcaacta 26824050  T
Q  347 tagcagatttggcc 360  Q
    |||||| |||||||    
T  26824049 tagcagttttggcc 26824036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 360
Target Start/End: Complemental strand, 30539306 - 30539194
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||||||||||||| |||| |||| |||||||||   |||||| ||||| |  |||||||||||| ||| || |||||||||| |||||||||||| |||    
T  30539306 taggcttaatagcagttttagccc-ttaactttcccaaagttgcgattttggtcccctaagaaaaaaaactacaaaaccgtcccctaagttttgcatctg 30539208  T
Q  347 tagcagatttggcc 360  Q
    | |||| |||||||    
T  30539207 tggcagttttggcc 30539194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 369
Target Start/End: Complemental strand, 9762513 - 9762395
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgta 348  Q
    ||||||||||||||||||||| | ||||||| | ||||||| ||||| | |||| | | |||| ||| || |||||||||| ||||||||||||||||||    
T  9762513 ggcttaatagcaattttcgccacctaacttttacgaagttgcgattttggccccttga-aaaaaaaactacaaaaccgtcc-ctaagttttgcaactgta 9762416  T
Q  349 gcagatttggcctcccaaggc 369  Q
    |||  ||||||  ||||||||    
T  9762415 gcaattttggctccccaaggc 9762395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 366
Target Start/End: Complemental strand, 22846756 - 22846639
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgta 348  Q
    |||||||||||| ||||  ||||||||||||  | ||||||||||||   || | |||||||| ||| || ||||| || | ||||||||||||| ||||    
T  22846756 ggcttaatagcagttttaaccccttaacttttttaaagttgtgattttagcctcttaagaaaaaaaactacaaaactgttccctaagttttgcaattgta 22846657  T
Q  349 gcagatttggcctcccaa 366  Q
    ||| |||||||| |||||    
T  22846656 gcatatttggccccccaa 22846639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 357
Target Start/End: Original strand, 6807171 - 6807279
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||||||||||| | |||| ||||| ||||||||  ||||||| ||||| | ||||||||||||| ||| ||  |||||  || ||||||||||||||||    
T  6807171 taggcttaatagtagtttttgccccataactttctcgaagttgcgattttggccccctaagaaaa-aaacta-caaaccaccccctaagttttgcaactg 6807268  T
Q  347 tagcagatttg 357  Q
    |||||| ||||    
T  6807269 tagcagttttg 6807279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 360
Target Start/End: Original strand, 20853376 - 20853487
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||||||||||||| |||| ||||| |||||||| |||||||| ||||| | |||||||  |||| ||| || ||||||  || ||||||||||||  ||    
T  20853376 taggcttaatagcagttttagccccctaactttcttgaagttgcgattttgacccccta--aaaaaaaactacaaaaccaccccctaagttttgcatatg 20853473  T
Q  347 tagcagatttggcc 360  Q
    | |||| |||||||    
T  20853474 tggcagttttggcc 20853487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 370
Target Start/End: Complemental strand, 27545666 - 27545550
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagca 351  Q
    ||||||||  |||| ||||| ||||| ||| ||||||| ||||| | ||||||||||||| ||| || |||||  ||| ||||||||| ||| |||||||    
T  27545666 ttaatagcggtttttgccccctaactatcacgaagttgcgattttggccccctaagaaaa-aaactacaaaactatcccctaagttttacaattgtagca 27545568  T
Q  352 gatttggcctcccaaggcc 370  Q
    | ||||||| |||||||||    
T  27545567 gttttggcc-cccaaggcc 27545550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 352
Target Start/End: Complemental strand, 33298646 - 33298548
Alignment:
Q  250 gcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtag 349  Q
    |||| |||||| |||||||| | ||||||||| ||||||| ||||| | |||||||||||||     || ||||||| || |||||||||||||| ||||    
T  33298646 gcttgatagcagttttcgcctcctaactttcacgaagttgcgattttggccccctaagaaaac----tacaaaaccgccccctaagttttgcaacagtag 33298551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 360
Target Start/End: Complemental strand, 14880633 - 14880538
Alignment:
Q  264 ttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcc 360  Q
    |||||||| ||||||||| |||||||  |||| | ||||||||||||| |||  | ||||||| |  ||||||||||||||||| |||| |||||||    
T  14880633 ttcgccccctaactttcacgaagttgcaattttggccccctaagaaaa-aaaccacaaaaccgcctcctaagttttgcaactgtcgcagttttggcc 14880538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 363
Target Start/End: Complemental strand, 39890097 - 39889973
Alignment:
Q  239 attaaagataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttt 338  Q
    |||||| | ||||||||||||| |||| || ||||||| ||  | |||||| |||||   ||| ||||||||| ||| || ||| ||| |||||||||||    
T  39890097 attaaaaaaaggcttaatagcagttttagctccttaacctttttaaagttgcgatttttaccctctaagaaaaaaaactacaaatccgccctctaagttt 39889998  T
Q  339 tgcaactgtagcagatttggcctcc 363  Q
    |||| |||| |||  ||||||||||    
T  39889997 tgcatctgtggcaattttggcctcc 39889973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 363
Target Start/End: Complemental strand, 23702449 - 23702335
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| |||| ||||| ||||||||   |||||| |||||   ||||||||||||| |||||| ||||  |||| ||||||||||||  |||    
T  23702449 aggcttaatagcagttttagccccctaactttccaaaagttgcgattttagccccctaagaaaa-aaattacaaaattgtcccctaagttttgcatttgt 23702351  T
Q  348 agcagatttggcctcc 363  Q
      ||| ||||||||||    
T  23702350 gacagttttggcctcc 23702335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 37813355 - 37813285
Alignment:
Q  299 ccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcctcccaaggcc 370  Q
    ||||||||||||| ||| || ||||||| || |||||||||||| |||| |||| ||||||| |||||||||    
T  37813355 ccccctaagaaaaaaaactacaaaaccgccccctaagttttgcatctgtggcagttttggcc-cccaaggcc 37813285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 326
Target Start/End: Original strand, 37813161 - 37813239
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccg 326  Q
    ||||||||||||| |||||||||| |||||||||  || ||  ||||| | ||||||||||||| ||| || |||||||    
T  37813161 aggcttaatagcagttttcgccccctaactttcacaaatttacgattttggccccctaagaaaaaaaactacaaaaccg 37813239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 335
Target Start/End: Original strand, 16982623 - 16982712
Alignment:
Q  246 ataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaag 335  Q
    |||||||| |||||| ||||| |||| ||||||||| |||||||  |||| |  |||||||||||| ||| || ||||||| || |||||    
T  16982623 ataggcttgatagcagttttcaccccctaactttcacgaagttgcaattttggtcccctaagaaaaaaaactacaaaaccgccccctaag 16982712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 37263361 - 37263418
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaa 309  Q
    ||||||||| |||||||||||||||||| | ||||||| ||||| | | |||||||||    
T  37263361 ttaatagcagttttcgccccttaacttttacgaagttgcgattttgactccctaagaa 37263418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 326
Target Start/End: Complemental strand, 28349624 - 28349545
Alignment:
Q  246 ataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccg 326  Q
    ||||||||||||| | |||| ||||| ||||||||   |||||| ||||| | ||||||||||||| |||||| |||||||    
T  28349624 ataggcttaatagtagttttagccccctaactttcccaaagttgcgattttggccccctaagaaaa-aaattacaaaaccg 28349545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 30539037 - 30539109
Alignment:
Q  299 ccccctaagaaaagaaat-tataaaaccgtcctctaagttttgcaactgtagcagatttggcctcccaaggcc 370  Q
    ||||||||||||| |||  || ||||| | || ||||||||| |||||||||||| ||||||| |||||||||    
T  30539037 ccccctaagaaaaaaaaactacaaaactgccccctaagttttacaactgtagcagttttggccccccaaggcc 30539109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 360
Target Start/End: Complemental strand, 41487469 - 41487413
Alignment:
Q  304 taagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcc 360  Q
    |||||||| ||| || ||||||| || |||||||||||||||||||| | |||||||    
T  41487469 taagaaaaaaaactacaaaaccgccccctaagttttgcaactgtagctgttttggcc 41487413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 249 - 367
Target Start/End: Complemental strand, 15023152 - 15023035
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgta 348  Q
    |||||||||||| |||| ||||| ||||||||| ||||||||||||| | ||||||||||||| ||| || |||||||||| |||||||||| |||||||    
T  15023152 ggcttaatagcagttttggccccctaactttcaagaagttgtgattttgaccccctaagaaaa-aaactacaaaaccgtcccctaagttttgtaactgta 15023054  T
Q  349 gcagatttggcctcccaag 367  Q
    |||  ||||||| ||||||    
T  15023053 gcaattttggccccccaag 15023035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 252 - 367
Target Start/End: Complemental strand, 6510310 - 6510196
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagca 351  Q
    ||||||||| |||||||||  ||||||||||||||||| ||||| | | ||||||||||| ||  || ||||||| || |||||||||||||||||||||    
T  6510310 ttaatagcagttttcgccctctaactttcatgaagttgcgattttggcaccctaagaaaa-aagctacaaaaccgccccctaagttttgcaactgtagca 6510212  T
Q  352 gatttggcctcccaag 367  Q
    | ||||||| ||||||    
T  6510211 gttttggccccccaag 6510196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 249 - 366
Target Start/End: Complemental strand, 34679404 - 34679290
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgta 348  Q
    |||||||||||| |||| ||||| ||||||||| ||||||||||||| | ||||||   |||| ||| || ||||||| || ||||||||||||||||||    
T  34679404 ggcttaatagcagtttttgccccctaactttcacgaagttgtgattttggccccct---aaaaaaaactacaaaaccgccccctaagttttgcaactgta 34679308  T
Q  349 gcagatttggcctcccaa 366  Q
    |||| ||||||| |||||    
T  34679307 gcagttttggccccccaa 34679290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 370
Target Start/End: Original strand, 19206139 - 19206261
Alignment:
Q  246 ataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaact 345  Q
    |||||||||||||||||||||||||| ||| |||||  |||||| ||||| | |||||||  |||| ||| || ||||||  || ||||||||| |||||    
T  19206139 ataggcttaatagcaattttcgccccctaattttcacaaagttgcgattttggcccccta--aaaaaaaactacaaaaccaccccctaagttttacaact 19206236  T
Q  346 gtagcagatttggcctcccaaggcc 370  Q
    ||||||| ||||||| |||||||||    
T  19206237 gtagcagttttggccccccaaggcc 19206261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 247 - 370
Target Start/End: Complemental strand, 14489526 - 14489406
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||||||||||||| |||||||||| ||||||||| ||||||| ||||| |  |||||||||||| ||| || |||| |  || ||||||||||||||||    
T  14489526 taggcttaatagcagttttcgccccctaactttcacgaagttgcgattttg-gcccctaagaaaa-aaactacaaaatcaccccctaagttttgcaactg 14489429  T
Q  347 tagcagatttggcctcccaaggcc 370  Q
    | |||| ||||||| |||||||||    
T  14489428 tggcagttttggcc-cccaaggcc 14489406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 252 - 367
Target Start/End: Complemental strand, 37431848 - 37431734
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagca 351  Q
    ||||||||| |||||||||| |||||| || ||||||| ||||| | || |||||||||| ||| || ||||||| ||  ||||||||||||||||||||    
T  37431848 ttaatagcagttttcgccccctaacttccacgaagttgcgattttggcctcctaagaaaa-aaactacaaaaccgccccttaagttttgcaactgtagca 37431750  T
Q  352 gatttggcctcccaag 367  Q
      ||||||| ||||||    
T  37431749 tttttggccccccaag 37431734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 370
Target Start/End: Complemental strand, 31827845 - 31827727
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgta 348  Q
    ||||||||||||||||||||||| ||||||| | ||||||| ||||  | || |||||||||| ||  || |||| |  || ||||||||||||||||||    
T  31827845 ggcttaatagcaattttcgccccctaacttttacgaagttgcgattatgacctcctaagaaaaaaa--tacaaaatcaccccctaagttttgcaactgta 31827748  T
Q  349 gcagatttggcctcccaaggcc 370  Q
    |||| ||||||| |||||||||    
T  31827747 gcagttttggcc-cccaaggcc 31827727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 34100790 - 34100848
Alignment:
Q  299 ccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttg 357  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||||||||||||| ||||    
T  34100790 ccccctaagaaaaaaaactataaaaccgtcccctaagttttgcaactgtagcagttttg 34100848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 370
Target Start/End: Complemental strand, 43029104 - 43028987
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagca 351  Q
    ||||||||| |||| |||| ||||||||||  |||||| ||||| | ||||||||||||| ||| || ||||||| || ||||||||| ||| |||||||    
T  43029104 ttaatagcagtttttgccc-ttaactttcacaaagttgcgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttacaattgtagca 43029006  T
Q  352 gatttggcctcccaaggcc 370  Q
    | ||||||| | |||||||    
T  43029005 gttttggccccacaaggcc 43028987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 360
Target Start/End: Complemental strand, 35718966 - 35718859
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagca 351  Q
    ||||||||| ||| |||| | ||||||||| ||||||| ||| | |  | |||||||||| ||| || |||||||||| |||||||||||||||||||||    
T  35718966 ttaatagcagtttccgcctcctaactttcacgaagttgcgatcttgatctcctaagaaaa-aaactacaaaaccgtcccctaagttttgcaactgtagca 35718868  T
Q  352 gatttggcc 360  Q
    | |||||||    
T  35718867 gttttggcc 35718859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 363
Target Start/End: Original strand, 14489213 - 14489327
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| |||| ||||  ||||||||   |||||||||||| | |||| |||||||| |||||| ||||||| || |||||||||||| ||||    
T  14489213 aggcttaatagcagttttagccctctaactttccaaaagttgtgattttggccccttaagaaaa-aaattacaaaaccgccccctaagttttgcacctgt 14489311  T
Q  348 agcagatttggcctcc 363  Q
     |||| |||| |||||    
T  14489312 ggcagttttgacctcc 14489327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 39918706 - 39918635
Alignment:
Q  299 ccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcctcccaaggcc 370  Q
    ||||||||||||| ||| || ||||||| || |||||||||||||||||||||  ||||||| |||||||||    
T  39918706 ccccctaagaaaaaaaactacaaaaccgccccctaagttttgcaactgtagcaattttggccccccaaggcc 39918635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 360
Target Start/End: Complemental strand, 32969844 - 32969728
Alignment:
Q  246 ataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccct--aagaaaagaaattataaaaccgtcctctaagttttgcaa 343  Q
    ||||||||||||||| |||||||||| ||||||||| | ||||  |||||   ||||||  || |||| || ||| ||||||| || |||||||||||||    
T  32969844 ataggcttaatagcagttttcgccccctaactttcacggagtttcgattttagccccctgaaaaaaaaaaacttacaaaaccgccccctaagttttgcaa 32969745  T
Q  344 ctgtagcagatttggcc 360  Q
    | ||||||| |||||||    
T  32969744 cagtagcagttttggcc 32969728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 360
Target Start/End: Original strand, 4576578 - 4576654
Alignment:
Q  284 aagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcc 360  Q
    ||||||| |||| | ||||||||||||| ||| || |||| |||||  ||||||||||||||||||||| |||||||    
T  4576578 aagttgtcattttggccccctaagaaaaaaaactacaaaatcgtcccataagttttgcaactgtagcagttttggcc 4576654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 351
Target Start/End: Complemental strand, 21358420 - 21358316
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaag-aaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    ||||||||||||| |||| ||||| ||||||||   |||||||||||| | ||||||||| |||| ||| |||||||||| |  ||||||||| || |||    
T  21358420 aggcttaatagcagtttttgccccctaactttctcaaagttgtgattttggccccctaagaaaaaaaaactataaaaccgcctcctaagttttccacctg 21358321  T
Q  347 tagca 351  Q
    |||||    
T  21358320 tagca 21358316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 325
Target Start/End: Original strand, 5362172 - 5362251
Alignment:
Q  246 ataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaacc 325  Q
    ||||||||||||| |||||||||||| |||||||||  |||||| ||||| | |||| |||||||| ||| || ||||||    
T  5362172 ataggcttaatagtaattttcgccccctaactttcacaaagttgcgattttggccccataagaaaaaaaactacaaaacc 5362251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 360
Target Start/End: Complemental strand, 34761176 - 34761063
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||| ||||||||| |||||| ||| ||||||||| ||||||| |||||   | || ||||||||  || || ||||||| |  ||||||||||||| ||    
T  34761176 taggtttaatagcagttttcgtcccctaactttcacgaagttgcgattttaactccttaagaaaaagaactacaaaaccgccacctaagttttgcaattg 34761077  T
Q  347 tagcagatttggcc 360  Q
    |||||| |||||||    
T  34761076 tagcagttttggcc 34761063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 351
Target Start/End: Original strand, 14943548 - 14943637
Alignment:
Q  261 attttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccg-tcctctaagttttgcaactgtagca 351  Q
    ||||| ||||| ||||||||| ||||||||||||| | | ||||||||||  ||| || |||||||  || |||||||||||||||||||||    
T  14943548 atttttgccccctaactttcacgaagttgtgattttgacaccctaagaaa--aaactacaaaaccgcacccctaagttttgcaactgtagca 14943637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 357
Target Start/End: Complemental strand, 37803446 - 37803337
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaag--aaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    ||||||||| ||||||||||||| ||||||| | ||||||| ||||| | || ||||||  |||| ||| ||  |||||| ||  |||||||||||||||    
T  37803446 ggcttaataacaattttcgccccctaacttttacgaagttgcgattttgacctcctaagaaaaaaaaaactacgaaaccg-cccataagttttgcaactg 37803348  T
Q  347 tagcagatttg 357  Q
    |||||| ||||    
T  37803347 tagcagttttg 37803337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 342
Target Start/End: Complemental strand, 5008543 - 5008509
Alignment:
Q  308 aaaagaaattataaaaccgtcctctaagttttgca 342  Q
    |||| ||||||||||||||||||||||||||||||    
T  5008543 aaaaaaaattataaaaccgtcctctaagttttgca 5008509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 362
Target Start/End: Original strand, 43028793 - 43028906
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| |||| ||||| ||||||     |||||| ||||| | ||||||||||||| ||| || ||||||  || |||||||||||| ||||    
T  43028793 aggcttaatagcagttttagccccctaacttctccaaagttgcgattttggccccctaagaaaaaaaactacaaaacccccc-ctaagttttgcatctgt 43028891  T
Q  348 agcagatttggcctc 362  Q
     |||| |||||||||    
T  43028892 ggcagttttggcctc 43028906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 370
Target Start/End: Complemental strand, 16043339 - 16043216
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaa-aag--aaattataaaaccgtcctctaagttttgcaact 345  Q
    ||||||| |||| |||||||||| ||||||||| ||||||  ||||| | ||||||||||| |||  ||| || | ||||| || ||| |||||||| ||    
T  16043339 ggcttaacagcagttttcgccccctaactttcacgaagttacgattttggccccctaagaagaagaaaaactacagaaccgccccctatgttttgcatct 16043240  T
Q  346 gtagcagatttggcctcccaaggcc 370  Q
    || |||| ||||||| |||||||||    
T  16043239 gtggcagttttggcc-cccaaggcc 16043216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 363
Target Start/End: Original strand, 25333496 - 25333612
Alignment:
Q  246 ataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaact 345  Q
    |||||||||||| |||||||  ||||||||||||    |||||| ||||| |  ||| |||||||| ||| |||||||||  || |||||||||||| ||    
T  25333496 ataggcttaataacaattttaaccccttaacttttccaaagttgcgattttggtcccttaagaaaa-aaactataaaaccaccccctaagttttgcacct 25333594  T
Q  346 gtagcagatttggcctcc 363  Q
    || |||| ||||| ||||    
T  25333595 gtggcagttttggtctcc 25333612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 360
Target Start/End: Complemental strand, 44618052 - 44617942
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| ||||  |||  ||||||||| ||||||| ||||| |  ||| ||||||||  ||||| ||||||| || ||||||||||||  |||    
T  44618052 aggcttaatagcagttttaaccctctaactttcaagaagttgcgattttggtcccttaagaaaa--aattacaaaaccgccccctaagttttgcatttgt 44617955  T
Q  348 agcagatttggcc 360  Q
     |||| |||||||    
T  44617954 ggcagttttggcc 44617942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 20650368 - 20650432
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaa 311  Q
    ||||||| |||||| |||| ||||| ||| ||||| ||||||| ||||| | |||||||||||||    
T  20650368 taggcttcatagcagttttagccccctaagtttcaagaagttgagattttggccccctaagaaaa 20650432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 363
Target Start/End: Original strand, 34679096 - 34679211
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccg-tcctctaagttttgcaactg 346  Q
    ||||||||||||| |||| ||||| |||||||    |||||| ||||| | || |||||||||| |||||| |||||||  || ||||||||||||  ||    
T  34679096 aggcttaatagcagttttagccccctaacttttccaaagttgcgattttggccacctaagaaaa-aaattacaaaaccgcccccctaagttttgcacatg 34679194  T
Q  347 tagcagatttggcctcc 363  Q
    | |||| ||||||||||    
T  34679195 tggcagttttggcctcc 34679211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 336
Target Start/End: Original strand, 35500039 - 35500127
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagt 336  Q
    ||||||||||||| |||| ||||| ||  |||||  |||||||||||||| ||| |||| |||| ||| || ||||||| || ||||||    
T  35500039 aggcttaatagcagttttggccccctatgtttcaaaaagttgtgatttcgacccactaacaaaataaaatacaaaaccgccccctaagt 35500127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 246 - 370
Target Start/End: Complemental strand, 86881 - 86756
Alignment:
Q  246 ataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaat-tataaaaccgtcctctaagttttgcaac 344  Q
    ||||||||||||| | |||||| ||| ||||||||||||||||| ||||| | ||||||||||||| |||| || ||||||| |  ||||||||||||||    
T  86881 ataggcttaataggagttttcgtcccctaactttcatgaagttgcgattttggccccctaagaaaaaaaatatacaaaaccgcctcctaagttttgcaac 86782  T
Q  345 tgtagcagatttggcctcccaaggcc 370  Q
    |||||||| ||||| | |||||||||    
T  86781 tgtagcagttttggtcccccaaggcc 86756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 248 - 357
Target Start/End: Complemental strand, 28712776 - 28712668
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||||||| | ||||||||||||| ||| || |||| || || |||||||||||||||||    
T  28712776 aggcttaatagcagttttcgccccctaacttttatgaagttgtgattttggccccctaagaaaa-aaactacaaaatcgccccctaagttttgcaactgt 28712678  T
Q  348 agcagatttg 357  Q
    ||||| ||||    
T  28712677 agcagttttg 28712668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 368
Target Start/End: Complemental strand, 3193098 - 3192977
Alignment:
Q  246 ataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaact 345  Q
    ||||||||||||||| ||||| |||| ||||||||| ||||||| ||||| | ||||||||||||| ||| |  ||||||| || |||||||||||||||    
T  3193098 ataggcttaatagcagttttcaccccctaactttcaagaagttgcgattttgaccccctaagaaaa-aaacttcaaaaccgacccctaagttttgcaact 3193000  T
Q  346 gtagcagatttggcctcccaagg 368  Q
    ||| ||| ||||||| |||||||    
T  3192999 gtaacagttttggccccccaagg 3192977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 368
Target Start/End: Original strand, 54718993 - 54719109
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| |||||| ||  ||||||||| ||||||| ||||| |  ||||||| ||||     |||||||||||||||||||||||||||||||    
T  54718993 aggcttaatagcagttttcgtccactaactttcacgaagttgcgattttgaacccctaaaaaaac----tataaaaccgtcctctaagttttgcaactgt 54719088  T
Q  348 agcagatttggcctcccaagg 368  Q
    ||||| ||||||| |||||||    
T  54719089 agcagttttggccccccaagg 54719109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 248 - 368
Target Start/End: Original strand, 17773169 - 17773288
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| |||||||||| |||||||||  |||||| ||||| | | ||||||| ||| ||| || ||||||| || |||||||||||||||||    
T  17773169 aggcttaatagcagttttcgccccctaactttcactaagttgcgattttggcaccctaaggaaaaaaactacaaaaccg-cccctaagttttgcaactgt 17773267  T
Q  348 agcagatttggcctcccaagg 368  Q
     |||| ||||||| |||||||    
T  17773268 ggcagttttggccccccaagg 17773288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 248 - 368
Target Start/End: Original strand, 19074470 - 19074589
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| |||||||||| |||||||||  |||||| ||||| | | ||||||| ||| ||| || ||||||| || |||||||||||||||||    
T  19074470 aggcttaatagcagttttcgccccctaactttcactaagttgcgattttggcaccctaaggaaaaaaactacaaaaccg-cccctaagttttgcaactgt 19074568  T
Q  348 agcagatttggcctcccaagg 368  Q
     |||| ||||||| |||||||    
T  19074569 ggcagttttggccccccaagg 19074589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 246 - 370
Target Start/End: Complemental strand, 25154498 - 25154374
Alignment:
Q  246 ataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaact 345  Q
    ||||||||||||||| ||||  |||| |||||||    |||||||||||| | || |||||||||| ||| || ||||||| ||  ||||||||||||||    
T  25154498 ataggcttaatagcagttttaaccccctaactttaccaaagttgtgattttgacctcctaagaaaaaaaactacaaaaccgccccttaagttttgcaact 25154399  T
Q  346 gtagcagatttggcctcccaaggcc 370  Q
    ||||||| ||||||| |||||||||    
T  25154398 gtagcagttttggccccccaaggcc 25154374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 370
Target Start/End: Complemental strand, 51315800 - 51315678
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||||||||||||| |||| ||||| ||||||||   |||||| ||||| | ||||||||||||| ||| || ||||||| || |||||||||||| |||    
T  51315800 taggcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttgcacctg 51315701  T
Q  347 tagcagatttggcctcccaaggcc 370  Q
    | |||| ||||||| |||||||||    
T  51315700 tggcagttttggcc-cccaaggcc 51315678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 367
Target Start/End: Complemental strand, 4474383 - 4474266
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||| ||||||||| ||||| || | ||||||| | ||||||| ||||| | |||||||| ||||   |||| ||||||| |||||||||||||||||||    
T  4474383 taggtttaatagcagttttctcctcctaacttttacgaagttgcgattttggccccctaaaaaaa---attacaaaaccgccctctaagttttgcaactg 4474287  T
Q  347 tagcagatttggcctcccaag 367  Q
    |||||| ||||||| ||||||    
T  4474286 tagcagttttggccccccaag 4474266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 370
Target Start/End: Original strand, 28204477 - 28204598
Alignment:
Q  246 ataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaact 345  Q
    ||||||||||||||| |||||||||||||||||||| ||||||| ||||| | ||||||   |||| ||| || |||| || || |||| |||| |||||    
T  28204477 ataggcttaatagcagttttcgccccttaactttcacgaagttgcgattttgaccccct---aaaaaaaactacaaaatcgccccctaaattttacaact 28204573  T
Q  346 gtagcagatttggcctcccaaggcc 370  Q
    ||||||| ||||| | |||||||||    
T  28204574 gtagcagttttggtcccccaaggcc 28204598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 370
Target Start/End: Original strand, 44433053 - 44433176
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaag--aaaagaaattataaaaccgtcctctaagttttgcaac 344  Q
    |||||||||||||||||||| |||| ||||||||| ||||||||||||| |  | ||||||  |||| ||| || ||||||| || ||| ||||||||||    
T  44433053 taggcttaatagcaattttcacccc-taactttcacgaagttgtgattttg-gctcctaagaaaaaaaaaactaaaaaaccgccccctaggttttgcaac 44433150  T
Q  345 tgtagcagatttggcctcccaaggcc 370  Q
    | |||||| |||||||||||||||||    
T  44433151 tatagcagttttggcctcccaaggcc 44433176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 247 - 357
Target Start/End: Complemental strand, 38958159 - 38958051
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||||||||||||| |||||||||| ||||||||| ||| ||  ||||| |  |||||||||||  ||| || ||||||| || ||||||||||||||||    
T  38958159 taggcttaatagcagttttcgccccctaactttcacgaaattacgattttgagcccctaagaaa--aaactacaaaaccgccccctaagttttgcaactg 38958062  T
Q  347 tagcagatttg 357  Q
    |||||| ||||    
T  38958061 tagcagttttg 38958051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 44436438 - 44436509
Alignment:
Q  299 ccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcctcccaaggcc 370  Q
    ||||||||||||| ||| || ||||||| || |||||||||||||||||||||| ||||||| |||||||||    
T  44436438 ccccctaagaaaaaaaactacaaaaccgccccctaagttttgcaactgtagcagttttggccccccaaggcc 44436509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 250 - 360
Target Start/End: Original strand, 47189599 - 47189707
Alignment:
Q  250 gcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtag 349  Q
    |||||||| || ||||||| || ||||||| ||||||||| ||||| | |||||||| ||||  || |||||||||| ||  ||||||||||||||||||    
T  47189599 gcttaataacagttttcgctccctaacttttatgaagttgcgattttggccccctaaaaaaa--aactataaaaccgccccttaagttttgcaactgtag 47189696  T
Q  350 cagatttggcc 360  Q
    ||| |||||||    
T  47189697 cagttttggcc 47189707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 366
Target Start/End: Original strand, 14856546 - 14856663
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgta 348  Q
    |||||||||||| ||||||| || ||||||||| ||||||| ||||| | | ||||||||||| ||| || |||| || ||  |||||||||||||| ||    
T  14856546 ggcttaatagcagttttcgcaccctaactttcacgaagttgcgattttgactccctaagaaaaaaaactacaaaatcgccccataagttttgcaactata 14856645  T
Q  349 gcagatttggcctcccaa 366  Q
    | || ||||||| |||||    
T  14856646 gtagttttggccccccaa 14856663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 366
Target Start/End: Original strand, 14340732 - 14340850
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||| | |||||||||| ||||||||| ||||||  ||||| |  |||||| ||| | ||| || ||||||| ||   ||||||||||| |||    
T  14340732 aggcttaataggagttttcgccccctaactttcacgaagttacgattttggtcccctacgaataaaaactacaaaaccgccccacaagttttgcaattgt 14340831  T
Q  348 agcagatttggcctcccaa 366  Q
    ||||| |||||||||||||    
T  14340832 agcagttttggcctcccaa 14340850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 365
Target Start/End: Original strand, 51315544 - 51315610
Alignment:
Q  299 ccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcctccca 365  Q
    |||||||| |||| |||||| ||||||| || |||||||||||||||||||||| ||||||| ||||    
T  51315544 ccccctaacaaaataaattacaaaaccgccccctaagttttgcaactgtagcagttttggcccccca 51315610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 366
Target Start/End: Complemental strand, 46227003 - 46226887
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||| ||||||||| |||||| ||| ||||||||| ||||||| ||||| | |||||||| ||||   | || ||||||||||  ||| |||||||||||    
T  46227003 taggattaatagcagttttcgtcccctaactttcacgaagttgcgattttgaccccctaaaaaaa---actacaaaaccgtcccataacttttgcaactg 46226907  T
Q  347 tagcagatttggcctcccaa 366  Q
    |||||| ||| ||| |||||    
T  46226906 tagcagttttagccccccaa 46226887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 360
Target Start/End: Complemental strand, 44586097 - 44585989
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagca 351  Q
    ||||||||| |||| ||||| ||||||||   |||||| ||||| | ||||||||||||| ||| || ||||||| || |||||||||||  |||| |||    
T  44586097 ttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttgcttctgtggca 44585998  T
Q  352 gatttggcc 360  Q
    | |||||||    
T  44585997 gttttggcc 44585989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 44624894 - 44624830
Alignment:
Q  299 ccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcctcc 363  Q
    ||||||||||||| ||| || ||||||| | ||||||||||||||||||||||| || |||||||    
T  44624894 ccccctaagaaaaaaaactacaaaaccgccatctaagttttgcaactgtagcagtttcggcctcc 44624830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 367
Target Start/End: Original strand, 43747282 - 43747396
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagca 351  Q
    ||||||||| |||||| ||  ||||||| | ||||||| ||||| | ||||||||||||| ||| || |||| || ||  |||||||||||| |||||||    
T  43747282 ttaatagcagttttcgtcctataacttttacgaagttgcgattttggccccctaagaaaa-aaactacaaaatcgcccaataagttttgcaattgtagca 43747380  T
Q  352 gatttggcctcccaag 367  Q
    | ||||||| ||||||    
T  43747381 gttttggccccccaag 43747396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 349
Target Start/End: Original strand, 578425 - 578512
Alignment:
Q  260 aattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtag 349  Q
    ||||| |||||||||||||||| ||||||| ||||| |  |||||||||||| ||| || |||| ||| | |||||||||||||||||||    
T  578425 aatttgcgccccttaactttcacgaagttgagattttg-acccctaagaaaa-aaactacaaaatcgttccctaagttttgcaactgtag 578512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 366
Target Start/End: Complemental strand, 54464484 - 54464360
Alignment:
Q  242 aaagataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaat-tataaaaccgtcctctaagttttg 340  Q
    ||||| ||||||||||||| ||| ||| || ||||||||| ||| ||| ||| | | ||||||||||||| |||  || ||||||| || ||||||||||    
T  54464484 aaagaaaggcttaatagcagttt-cgctccctaactttcacgaatttgcgatattggccccctaagaaaaaaaaactacaaaaccggcccctaagttttg 54464386  T
Q  341 caactgtagcagatttggcctcccaa 366  Q
    ||||| | |||| ||||||| |||||    
T  54464385 caactctggcagttttggccccccaa 54464360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 363
Target Start/End: Original strand, 12759502 - 12759621
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaa-----aagaaattataaaaccgtcctctaagttttgca 342  Q
    |||||||||| || |||| ||||| ||||||||| ||| ||| ||||| | |||| ||||||     || ||| || ||||||| || ||||||||||||    
T  12759502 aggcttaataacagtttttgccccctaactttcaagaaattgcgattttggccccttaagaaggaaaaaaaaactacaaaaccgccc-ctaagttttgca 12759600  T
Q  343 actgtagcagatttggcctcc 363  Q
    |||||||||| ||||||||||    
T  12759601 actgtagcagttttggcctcc 12759621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 348
Target Start/End: Original strand, 791359 - 791413
Alignment:
Q  293 tttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgta 348  Q
    |||||||||| |||||||| ||||||||||||||||| ||| ||||||||| ||||    
T  791359 tttcgcccccttaagaaaa-aaattataaaaccgtcccctatgttttgcaattgta 791413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 366
Target Start/End: Original strand, 8024828 - 8024891
Alignment:
Q  303 ctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcctcccaa 366  Q
    ||||| ||| |||||| ||||||| || ||| |||||||||||||||||| ||||||| |||||    
T  8024828 ctaaggaaaaaaattacaaaaccgccccctacgttttgcaactgtagcagttttggccccccaa 8024891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 360
Target Start/End: Complemental strand, 25248986 - 25248890
Alignment:
Q  262 ttttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcc 360  Q
    ||||||||| |||| ||||| ||||||| ||||| | || ||||| ||||  || || ||| ||| ||| ||||||||||||||||||||| |||||||    
T  25248986 ttttcgccctttaattttcacgaagttgcgattttggcctcctaaaaaaa--aactacaaatccgccctttaagttttgcaactgtagcagttttggcc 25248890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 44436662 - 44436592
Alignment:
Q  299 ccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcctcccaaggcc 370  Q
    ||||||||||||| ||| || ||||||| || |||||||||||| |||| |||| ||||||| |||||||||    
T  44436662 ccccctaagaaaaaaaactacaaaaccgccccctaagttttgcatctgtggcagttttggcc-cccaaggcc 44436592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 360
Target Start/End: Original strand, 27178141 - 27178250
Alignment:
Q  250 gcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtag 349  Q
    ||||||||||| |||||| ||| ||||||| | ||||||| ||||| | |||||||||||||  || || |||||||  | ||||||||||||| | |||    
T  27178141 gcttaatagcagttttcgtcccctaacttttacgaagttgcgattt-ggccccctaagaaaaataactacaaaaccgcaccctaagttttgcaaatatag 27178239  T
Q  350 cagatttggcc 360  Q
    ||  |||||||    
T  27178240 caattttggcc 27178250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 365
Target Start/End: Complemental strand, 28944281 - 28944164
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||||||||||||| |||| | ||| ||||||| |  |||||| ||||| | || | |||||||| ||| || ||||||||||  ||||||||||||||     
T  28944281 taggcttaatagcagtttttgtcccctaacttttactaagttgcgattttggcctcataagaaaa-aaactacaaaaccgtcccttaagttttgcaactt 28944183  T
Q  347 tagcagatttggcctccca 365  Q
     ||||| ||||||| ||||    
T  28944182 cagcagttttggcccccca 28944164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 33329611 - 33329673
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaa 311  Q
    |||||||||||| |||||||||  ||||||| | ||||||| ||||| | |||||||||||||    
T  33329611 ggcttaatagcagttttcgccctctaacttttacgaagttgcgattttgaccccctaagaaaa 33329673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 360
Target Start/End: Complemental strand, 35359300 - 35359187
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaag-aaattataaaaccgtcctctaagttttgcaact 345  Q
    |||||||||||| | ||||| |||  ||||||||| |||||||| |||| | |||| ||||||||  ||| || |||| || ||||||||||||||||||    
T  35359300 taggcttaatagtagttttcaccctctaactttcacgaagttgtaattttggcccc-taagaaaaacaaactacaaaatcgccctctaagttttgcaact 35359202  T
Q  346 gtagcagatttggcc 360  Q
     | |||| |||||||    
T  35359201 atggcagttttggcc 35359187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 38177178 - 38177240
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaa 311  Q
    |||||||| |||||||| ||||||||||||||   |||||| ||||| | |||||||||||||    
T  38177178 ggcttaatggcaattttagccccttaactttcccaaagttgcgattttggccccctaagaaaa 38177240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 14349425 - 14349376
Alignment:
Q  246 ataggcttaatagcaattttcgccccttaactttcatgaagttgtgattt 295  Q
    ||||||||||||||| |||||||||| ||||||| | ||||||| |||||    
T  14349425 ataggcttaatagcagttttcgccccctaacttttacgaagttgcgattt 14349376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 28712490 - 28712557
Alignment:
Q  284 aagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcag 352  Q
    |||||||||||| | ||||||||||||| ||| || |||| || || |||||||||||| |||||||||    
T  28712490 aagttgtgattttggccccctaagaaaa-aaactacaaaatcgccccctaagttttgcatctgtagcag 28712557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 367
Target Start/End: Original strand, 44585837 - 44585905
Alignment:
Q  299 ccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcctcccaag 367  Q
    ||||||||| ||| ||| || ||||||| || |||| ||||||||||||||||| ||| ||| ||||||    
T  44585837 ccccctaaggaaaaaaactacaaaaccgccccctaaattttgcaactgtagcagttttcgccccccaag 44585905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 251 - 367
Target Start/End: Original strand, 23891662 - 23891777
Alignment:
Q  251 cttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagc 350  Q
    |||||||||| ||||||| || ||||||||| ||||||||||||| | ||||||||||||| ||| || ||||||| ||  |||||||||||||||||||    
T  23891662 cttaatagcagttttcgctccctaactttcacgaagttgtgattttggccccctaagaaaa-aaactacaaaaccgccccttaagttttgcaactgtagc 23891760  T
Q  351 agatttggcctcccaag 367  Q
    || ||||||| ||||||    
T  23891761 agttttggccccccaag 23891777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 247 - 360
Target Start/End: Original strand, 25085397 - 25085509
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||||||||||||| |||||||||| |||||||||| |||||| ||||| |  |||||||||||| ||| || ||||||| |||||||||||| ||||||    
T  25085397 taggcttaatagcagttttcgccccctaactttcataaagttgcgattttg-acccctaagaaaaaaaactacaaaaccgccctctaagttttacaactg 25085495  T
Q  347 tagcagatttggcc 360  Q
    |||||  |||||||    
T  25085496 tagcaattttggcc 25085509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 248 - 370
Target Start/End: Original strand, 39642199 - 39642321
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| |||||||||| ||||||||| ||||||| ||||| | ||| ||||  ||| ||| || ||||||| || ||||||| ||||| |||    
T  39642199 aggcttaatagcagttttcgccccctaactttcacgaagttgcgattttggccctctaaataaaaaaactacaaaaccgccccctaagttctgcaattgt 39642298  T
Q  348 agcagatttggcctcccaaggcc 370  Q
    ||||| ||||||| |||||||||    
T  39642299 agcagttttggccccccaaggcc 39642321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 370
Target Start/End: Complemental strand, 3377825 - 3377705
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgta 348  Q
    |||||||||||| |||| ||||| ||||||||   |||||||||||| | ||||||| ||||| ||| || |||||||||| ||||||||||||||| ||    
T  3377825 ggcttaatagcagttttagccccctaactttcccaaagttgtgattttggccccctaggaaaa-aaactacaaaaccgtcccctaagttttgcaacttta 3377727  T
Q  349 gcagatttggcctcccaaggcc 370  Q
    |||| |||||||  ||||||||    
T  3377726 gcagttttggccctccaaggcc 3377705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 352
Target Start/End: Complemental strand, 50401682 - 50401583
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagca 351  Q
    ||||||||| |||||||||||||| |||   ||||||| ||||| | | || |||||||| ||| || ||||||||||||||||||||||||||||||||    
T  50401682 ttaatagcagttttcgccccttaattttttcgaagttgcgattttggctccttaagaaaa-aaactacaaaaccgtcctctaagttttgcaactgtagca 50401584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 247 - 348
Target Start/End: Original strand, 7060625 - 7060727
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaa-ttataaaaccgtcctctaagttttgcaact 345  Q
    |||| ||||||||| ||||||| | |||||||| ||||||||| ||||| |  || ||||||||| ||| ||| ||||||| ||||||||||||||||||    
T  7060625 taggtttaatagcagttttcgctctttaacttttatgaagttgcgattttgatcctctaagaaaaaaaaattacaaaaccgccctctaagttttgcaact 7060724  T
Q  346 gta 348  Q
    |||    
T  7060725 gta 7060727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 370
Target Start/End: Original strand, 3377500 - 3377621
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| |||| ||||| |||||||    |||||| ||||| | ||||||||||||| ||| || ||||||| || ||||||||||||  |||    
T  3377500 aggcttaatagcagttttagccccctaacttttccaaagttgcgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttgcatttgt 3377599  T
Q  348 agcagatttggcctcccaaggcc 370  Q
     |||| ||||||| |||||||||    
T  3377600 ggcagttttggcc-cccaaggcc 3377621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 358
Target Start/End: Complemental strand, 14979114 - 14979006
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgta 348  Q
    |||||||||| | |||||||||| |||||||||||||||||  |||| | || |||||||||| | | || ||||||| || |||| |||||||||||||    
T  14979114 ggcttaatagaagttttcgccccctaactttcatgaagttgcaattttggcctcctaagaaaa-atactacaaaaccgccccctaaattttgcaactgta 14979016  T
Q  349 gcagatttgg 358  Q
    | || |||||    
T  14979015 gtagttttgg 14979006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 368
Target Start/End: Complemental strand, 17761006 - 17760885
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaat-tataaaaccgtcctctaagttttgcaactg 346  Q
    ||||||||||||| |||||| | ||||||||| | |||||||  |||| |  |||||||||||| |||  || ||||||| ||  |||||||||||| ||    
T  17761006 aggcttaatagcagttttcgtctcttaacttttacgaagttgcaattttgatcccctaagaaaaaaaaactacaaaaccgccccttaagttttgcaattg 17760907  T
Q  347 tagcagatttggcctcccaagg 368  Q
    |||||| ||||||| |||||||    
T  17760906 tagcagttttggccccccaagg 17760885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 370
Target Start/End: Complemental strand, 45739244 - 45739129
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagca 351  Q
    ||||||| | |||||| || |||||||||| ||||||| ||||| | || ||||| ||||   |||| ||||| | ||  ||||||||||||||||||||    
T  45739244 ttaatagtagttttcgtcctttaactttcacgaagttgcgattttggcctcctaaaaaaa---attacaaaactgccccataagttttgcaactgtagca 45739148  T
Q  352 gatttggcctcccaaggcc 370  Q
    | ||||||| |||||||||    
T  45739147 gttttggccccccaaggcc 45739129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 360
Target Start/End: Original strand, 41997638 - 41997750
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctc-taagttttgcaact 345  Q
    |||| |||||||||||||| ||||| ||| |||||  |||||| ||||| | |||| ||||||||  || || ||||||| |||| ||||||||||||||    
T  41997638 taggtttaatagcaatttttgccccctaattttcacaaagttgcgattttggccccataagaaaa-caactacaaaaccg-cctcataagttttgcaact 41997735  T
Q  346 gtagcagatttggcc 360  Q
    ||||||| |||||||    
T  41997736 gtagcagttttggcc 41997750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 358
Target Start/End: Complemental strand, 46573142 - 46573032
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| |||| | ||  ||||||| | ||||||| ||||| |  |||||||||||| ||| || || || | || |||||||||||||||||    
T  46573142 aggcttaatagcagtttttgtcctctaacttttacgaagttgcgattttggtcccctaagaaaaaaaactacaacactgccccctaagttttgcaactgt 46573043  T
Q  348 agcagatttgg 358  Q
    ||||| |||||    
T  46573042 agcagttttgg 46573032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 252 - 360
Target Start/End: Complemental strand, 1096761 - 1096652
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaatt-ataaaaccgtcctctaagttttgcaactgtagc 350  Q
    ||||| ||| ||||||| |  ||||||||| ||| ||| |||||   |||| |||||||| ||||| | |||||||||| ||||| ||||||||||||||    
T  1096761 ttaattgcagttttcgctctctaactttcacgaaattgcgattttagccccttaagaaaaaaaatttacaaaaccgtcccctaagctttgcaactgtagc 1096662  T
Q  351 agatttggcc 360  Q
    || |||||||    
T  1096661 agttttggcc 1096652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 368
Target Start/End: Original strand, 18216684 - 18216804
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    ||||||||||| || |||||||||  ||||||| ||||||||   |||| | ||||||||||||| ||| |  ||||| | |||||||||||| |||||     
T  18216684 taggcttaataacagttttcgccctctaacttttatgaagttacaattttggccccctaagaaaa-aaacttcaaaacagccctctaagttttccaacta 18216782  T
Q  347 tagcagatttggcctcccaagg 368  Q
    |||||| ||||| | |||||||    
T  18216783 tagcagttttggacccccaagg 18216804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 368
Target Start/End: Complemental strand, 23220877 - 23220757
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    ||||||| |||||| |||||||||| ||||||| | ||||||  ||||| |  |||||  ||||| ||| || ||||||| || ||||||||| ||||||    
T  23220877 taggcttgatagcagttttcgccccctaacttttacgaagttacgattttggtcccctctgaaaa-aaactacaaaaccgccccctaagttttacaactg 23220779  T
Q  347 tagcagatttggcctcccaagg 368  Q
    |||||| ||||| | |||||||    
T  23220778 tagcagttttggtcccccaagg 23220757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 361
Target Start/End: Complemental strand, 48319719 - 48319608
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgta 348  Q
    |||||||||||| |||||| |||| ||||||||  ||||||  |||| | | |  | |||||| |||||| ||| ||| || ||||||||||||||||||    
T  48319719 ggcttaatagcagttttcgtccct-aactttcacaaagttgctattttgactcaatgagaaaaaaaattacaaagccgccccctaagttttgcaactgta 48319621  T
Q  349 gcagatttggcct 361  Q
    |||| ||||||||    
T  48319620 gcagttttggcct 48319608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 342
Target Start/End: Original strand, 7579666 - 7579757
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcg-cccccctaagaaaagaaattataaaaccgtcctctaagttttgca 342  Q
    ||||||||| ||||  |||||||||||||   |||||| ||||| | |||||||||||||| ||| || ||||||| || ||||||||||||    
T  7579666 ttaatagcagttttaaccccttaactttccaaaagttgcgattttggcccccctaagaaaaaaaactacaaaaccgcccgctaagttttgca 7579757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 366
Target Start/End: Complemental strand, 25486528 - 25486409
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||||||||||||| |||| ||||| ||||||||| ||||||| |||||   | |  || ||||| ||| ||||||   |||| ||||||||| |||||     
T  25486528 taggcttaatagcagtttttgccccctaactttcacgaagttgcgattttagctctttatgaaaataaactataaatttgtcccctaagttttacaacta 25486429  T
Q  347 tagcagatttggcctcccaa 366  Q
    |||||| ||||||| |||||    
T  25486428 tagcagttttggccccccaa 25486409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 366
Target Start/End: Original strand, 6569530 - 6569643
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagca 351  Q
    ||||||||| |||||||| | ||| ||| |  || ||||||||| | ||||||||||||| |||||| ||||||| ||   || |||||||| |||||||    
T  6569530 ttaatagcagttttcgcctcctaatttttacaaaattgtgattttgaccccctaagaaaa-aaattacaaaaccgcccctaaaattttgcaattgtagca 6569628  T
Q  352 gatttggcctcccaa 366  Q
    | ||||||| |||||    
T  6569629 gttttggccccccaa 6569643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 360
Target Start/End: Original strand, 15659022 - 15659091
Alignment:
Q  291 gatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcc 360  Q
    ||||||||| | ||||||||| ||| || | ||||| || |||||||||||||||| ||||| |||||||    
T  15659022 gatttcgcctcgctaagaaaaaaaactacacaaccgccccctaagttttgcaactggagcagttttggcc 15659091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 360
Target Start/End: Original strand, 45738934 - 45739046
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||||||||||||||||||  | || ||||||||   |||||||||||| | ||||||||| ||| ||| || ||||||| ||  ||||||||||| ||     
T  45738934 taggcttaatagcaattttaactccctaactttctcaaagttgtgattttgaccccctaaggaaa-aaactacaaaaccgccccttaagttttgcatcta 45739032  T
Q  347 tagcagatttggcc 360  Q
    | |||| |||||||    
T  45739033 tggcagttttggcc 45739046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 370
Target Start/End: Original strand, 10727188 - 10727311
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||||||||||||| |||||||| | |||||||   ||||||||||||| |  | |||||||||| ||| || ||||| | |||||||||||||||||||    
T  10727188 taggcttaatagcagttttcgcctcctaactttagcgaagttgtgattttggactcctaagaaaaaaaactacaaaactgccctctaagttttgcaactg 10727287  T
Q  347 tagcagatttggcctcccaaggcc 370  Q
    |||||| ||||||| |||||||||    
T  10727288 tagcagttttggccccccaaggcc 10727311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 248 - 370
Target Start/End: Complemental strand, 12766529 - 12766409
Alignment:
Q  248 aggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgt 347  Q
    ||||||||||||| ||||| |||| ||||||||| ||||||| ||||| | |||||||| |||| ||| || ||||||| ||  ||||||||||||||||    
T  12766529 aggcttaatagcagttttcaccccctaactttcacgaagttgcgattttggccccctaa-aaaaaaaactacaaaaccgccccttaagttttgcaactgt 12766431  T
Q  348 agcagatttggcctcccaaggcc 370  Q
    ||||| ||||||| |||||||||    
T  12766430 agcagttttggcc-cccaaggcc 12766409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 360
Target Start/End: Original strand, 3579593 - 3579705
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||||||||||||| |||||| ||||||||||||| ||||||| ||||| | |||| ||| |||| ||| || ||||||| || ||||||||||||||||    
T  3579593 taggcttaatagcagttttcgtcccttaactttcacgaagttgcgattttggccccgtaa-aaaaaaaactacaaaaccgccccctaagttttgcaactg 3579691  T
Q  347 tagcagatttggcc 360  Q
    |||||  |||||||    
T  3579692 tagcacttttggcc 3579705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 247 - 370
Target Start/End: Complemental strand, 10727510 - 10727388
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    ||||| |||||||| |||| ||||| |||||||    |||||||||||| | ||||||||||||| ||| || ||||||| || |||||||||||| |||    
T  10727510 taggcataatagcagttttagccccctaacttttccaaagttgtgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttgcatctg 10727411  T
Q  347 tagcagatttggcctcccaaggcc 370  Q
    | |||| ||||||| |||||||||    
T  10727410 tggcagttttggcc-cccaaggcc 10727388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 370
Target Start/End: Original strand, 238928 - 239047
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||||||||||||| |||||||||| ||| ||||| ||||||| ||||| | || |||   |||| ||| || |||| ||||| |||||||||||||| |    
T  238928 taggcttaatagcagttttcgccccctaattttcacgaagttgcgattttgacctcct---aaaaaaaactacaaaatcgtcccctaagttttgcaaccg 239024  T
Q  347 tagcagatttggcctcccaaggcc 370  Q
    |||||| ||||||| |||||||||    
T  239025 tagcagttttggcc-cccaaggcc 239047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 26601769 - 26601666
Alignment:
Q  253 taatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcag 352  Q
    |||||||| |||| ||| | ||||||||| ||||||| ||||||  |||| |||||||| ||| |||||||||| || |||| |||||||||||||||||    
T  26601769 taatagcagtttttgcctcctaactttcacgaagttgcgatttctgccccttaagaaaa-aaactataaaaccgccccctaaattttgcaactgtagcag 26601671  T
Q  353 atttg 357  Q
     ||||    
T  26601670 ttttg 26601666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 358
Target Start/End: Original strand, 2853448 - 2853536
Alignment:
Q  268 ccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttgg 358  Q
    |||| ||||||||| ||||||| |||||   |||||||||||||  || || |||||||||| |||||||||||||||||||||| |||||    
T  2853448 ccccataactttcacgaagttgcgattttcgccccctaagaaaa--aactacaaaaccgtcccctaagttttgcaactgtagcagttttgg 2853536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 369
Target Start/End: Complemental strand, 28011436 - 28011320
Alignment:
Q  251 cttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagc 350  Q
    |||||||||| ||||| |||| ||||||||| ||||||| ||||| | |||  ||||| || ||| || ||||||| ||  |||||||||||||||||||    
T  28011436 cttaatagcagttttcaccccctaactttcacgaagttgcgattttgtccc--taagagaaaaaactacaaaaccgccccttaagttttgcaactgtagc 28011339  T
Q  351 agatttggcctcccaaggc 369  Q
    || ||||||| | ||||||    
T  28011338 agttttggccccacaaggc 28011320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 367
Target Start/End: Complemental strand, 33401367 - 33401251
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgta 348  Q
    |||||||||||| ||||| |||| ||||||| | ||||||  ||||| | | |||||| ||||  || || ||||| |||| ||||||||||||||||||    
T  33401367 ggcttaatagcagttttcaccccctaacttttacgaagttacgattttggctccctaaaaaaa--aactacaaaactgtcccctaagttttgcaactgta 33401270  T
Q  349 gcagatttggcctcccaag 367  Q
    |||| ||||||| ||||||    
T  33401269 gcagttttggccccccaag 33401251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 370
Target Start/End: Original strand, 6036644 - 6036764
Alignment:
Q  249 ggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgta 348  Q
    |||||||||||| |||||||||   ||||| || ||||||| ||||| | ||||||||||||| || ||| |||||  ||| ||||||||||||  |||     
T  6036644 ggcttaatagcagttttcgcccgcaaacttccacgaagttgcgattttgaccccctaagaaaaaaagttacaaaactatcccctaagttttgcatatgtg 6036743  T
Q  349 gcagatttggcctcccaaggcc 370  Q
    |||| ||||||| |||||||||    
T  6036744 gcagttttggcc-cccaaggcc 6036764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 367
Target Start/End: Complemental strand, 32143552 - 32143447
Alignment:
Q  262 ttttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcct 361  Q
    ||||| |||| ||||||| ||||||||| ||||| | ||| |||||||||  || || ||||  | ||||||||||||||||||||||||| | |||||     
T  32143552 ttttcaccccctaacttttatgaagttgcgattttgaccctctaagaaaaataactacaaaattgccctctaagttttgcaactgtagcagttctggccc 32143453  T
Q  362 cccaag 367  Q
    ||||||    
T  32143452 cccaag 32143447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 366
Target Start/End: Original strand, 2840790 - 2840906
Alignment:
Q  250 gcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtag 349  Q
    ||||||||||| ||||||| |   |||||| |  |||||| ||||| |  ||||||| |||| ||| || |||||||||| ||||||||||||| |||||    
T  2840790 gcttaatagcagttttcgctctccaacttttacaaagttgcgattttggtcccctaaaaaaaaaaaatacaaaaccgtcccctaagttttgcaattgtag 2840889  T
Q  350 cagatttggcctcccaa 366  Q
    ||| ||||||| |||||    
T  2840890 cagttttggccccccaa 2840906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 360
Target Start/End: Complemental strand, 1377517 - 1377411
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagca 351  Q
    |||||| || |||||| ||| ||||||||| ||||||| ||||| | |||| |||||||| ||| || ||||| || | |||||||||||||||||| ||    
T  1377517 ttaatatcagttttcgtcccctaactttcacgaagttgcgattttggcccc-taagaaaa-aaactacaaaactgttccctaagttttgcaactgtaaca 1377420  T
Q  352 gatttggcc 360  Q
    | |||||||    
T  1377419 gttttggcc 1377411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 360
Target Start/End: Complemental strand, 1385265 - 1385159
Alignment:
Q  252 ttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagca 351  Q
    |||||| || |||||| ||| ||||||||| ||||||| ||||| | |||| |||||||| ||| || ||||| || | |||||||||||||||||| ||    
T  1385265 ttaatatcagttttcgtcccctaactttcacgaagttgcgattttggcccc-taagaaaa-aaactacaaaactgttccctaagttttgcaactgtaaca 1385168  T
Q  352 gatttggcc 360  Q
    | |||||||    
T  1385167 gttttggcc 1385159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 366
Target Start/End: Complemental strand, 17248953 - 17248839
Alignment:
Q  251 cttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaat-tataaaaccgtcctctaagttttgcaactgtag 349  Q
    |||||||||| || |||||||| |||||| | ||||||| ||||| | |||| |||||||| |||  || |||||||||| | ||||||||||| |||||    
T  17248953 cttaatagcagttgtcgcccct-aacttttaggaagttgcgattttggccccataagaaaaaaaaactacaaaaccgtcccc-aagttttgcaattgtag 17248856  T
Q  350 cagatttggcctcccaa 366  Q
    ||| ||||||| |||||    
T  17248855 cagttttggccccccaa 17248839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 360
Target Start/End: Complemental strand, 77178 - 77064
Alignment:
Q  246 ataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaact 345  Q
    ||||||||||||| | ||||  || | |||||||  | |||||| | ||| | ||||||||||||| ||| || |||| ||||| ||||||||| |||||    
T  77178 ataggcttaatagtagttttaaccgcctaacttttttaaagttgcggttttggccccctaagaaaaaaaactacaaaatcgtcccctaagttttacaact 77079  T
Q  346 gtagcagatttggcc 360  Q
    ||||||| |||||||    
T  77078 gtagcagttttggcc 77064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1458 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 1468 - 1533
Alignment:
Q  246 ataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaa 311  Q
    ||||||||||||||| |||| ||||| |||||||||  |||||| ||||| | |||||||||||||    
T  1468 ataggcttaatagcagttttagccccctaactttcacaaagttgagattttggccccctaagaaaa 1533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0372 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0372
Description:

Target: scaffold0372; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 374 - 308
Alignment:
Q  299 ccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcctcccaag 367  Q
    |||||||||||||  || ||||||||||| | ||||||||| |||||||||||| ||||||| ||||||    
T  374 ccccctaagaaaa--aactataaaaccgttccctaagttttacaactgtagcagctttggccccccaag 308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 21973 - 21872
Alignment:
Q  247 taggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactg 346  Q
    |||||||||||||| |||||| ||| ||||||| |||  |||| ||||| | |||| |||| ||| |||||| |||||||| |  |||||||| ||||||    
T  21973 taggcttaatagcagttttcgtcccctaacttttatgctgttgcgattttggccccttaagtaaaaaaattacaaaaccgttccataagttttacaactg 21874  T
Q  347 ta 348  Q
    ||    
T  21873 ta 21872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 352
Target Start/End: Complemental strand, 94082 - 94013
Alignment:
Q  283 gaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcag 352  Q
    ||||||| ||||| | ||||||||||||| ||| || ||||||||||  ||||||||| |||||||||||    
T  94082 gaagttgcgattttgaccccctaagaaaaaaaactacaaaaccgtcccataagttttgtaactgtagcag 94013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 365
Target Start/End: Complemental strand, 9654 - 9534
Alignment:
Q  246 ataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaat-tataaaaccgtcctctaagttttgcaac 344  Q
    ||||| ||||||||| ||||| || | ||||||||| ||||||| ||||| |  |||||||||||| |||  ||  ||| || || ||||||||||||||    
T  9654 ataggtttaatagcagttttcacctcctaactttcacgaagttgcgattttgatcccctaagaaaaaaaaactaccaaatcgccccctaagttttgcaac 9555  T
Q  345 tgtagcagatttggcctccca 365  Q
    |||||||| ||| ||| ||||    
T  9554 tgtagcagttttagcccccca 9534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 342
Target Start/End: Original strand, 3134 - 3168
Alignment:
Q  308 aaaagaaattataaaaccgtcctctaagttttgca 342  Q
    |||| ||||||||||||||||||||||||||||||    
T  3134 aaaaaaaattataaaaccgtcctctaagttttgca 3168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 360
Target Start/End: Original strand, 19915 - 20024
Alignment:
Q  250 gcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtag 349  Q
    ||||||||||| ||||  |||| ||| |||  | |||||||||||| | |||| |||||||| ||| || |||| ||||| |||||||||||| |||| |    
T  19915 gcttaatagcagttttaaccccctaaattttttaaagttgtgattttggcccc-taagaaaaaaaactacaaaatcgtccactaagttttgcatctgtgg 20013  T
Q  350 cagatttggcc 360  Q
    ||| |||||||    
T  20014 cagttttggcc 20024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 3636 - 3701
Alignment:
Q  246 ataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaa 311  Q
    ||||||||||||||| |||| ||||| ||||||||   |||||| ||||| | |||||||||||||    
T  3636 ataggcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaagaaaa 3701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 3636 - 3701
Alignment:
Q  246 ataggcttaatagcaattttcgccccttaactttcatgaagttgtgatttcgcccccctaagaaaa 311  Q
    ||||||||||||||| |||| ||||| ||||||||   |||||| ||||| | |||||||||||||    
T  3636 ataggcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaagaaaa 3701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 9815 - 9739
Alignment:
Q  284 aagttgtgatttcgcccccctaagaaaagaaattataaaaccgtcctctaagttttgcaactgtagcagatttggcc 360  Q
    |||||||||||| | ||||||||||||| ||| ||||||| || || |||| ||||||| | || |||| |||||||    
T  9815 aagttgtgattttgaccccctaagaaaaaaaactataaaatcgccccctaaattttgcatcggtggcagttttggcc 9739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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