View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4614-Insertion-12 (Length: 290)

Name: NF4614-Insertion-12
Description: NF4614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4614-Insertion-12
NF4614-Insertion-12
[»] chr1 (3 HSPs)
chr1 (8-116)||(46249171-46249279)
chr1 (162-233)||(46249325-46249396)
chr1 (262-290)||(46249425-46249453)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 46249171 - 46249279
Alignment:
Q  8 gaaacaatgactcaattcccttttccttcaacttttctctcaacggctccgatatcttaaatttagaaatcccattgggatcctccaccttgttttccat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46249171 gaaacaatgactcaattcccttttccttcaacttttctctcaacggctccgatatcttaaatttagaaatcccattgggatcctccaccttgttttccat 46249270  T
Q  108 tactacaaa 116  Q
    |||||||||    
T  46249271 tactacaaa 46249279  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 46249325 - 46249396
Alignment:
Q  162 atccaactctaaactattctcattatcgtctctattggtcgtcgtcattgtctataacacggaagccttacg 233  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  46249325 atccaactctaaactattctcattatcgtctccattggtcgtcgtcattgtctataacatggaagccttacg 46249396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 290
Target Start/End: Original strand, 46249425 - 46249453
Alignment:
Q  262 gaaaccacatctggatgttttcttgttgt 290  Q
    |||||||||||||||||||||||||||||    
T  46249425 gaaaccacatctggatgttttcttgttgt 46249453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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