View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4614-Insertion-2 (Length: 1024)

Name: NF4614-Insertion-2
Description: NF4614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4614-Insertion-2
NF4614-Insertion-2
[»] chr8 (6 HSPs)
chr8 (90-974)||(37005790-37006648)
chr8 (8-346)||(36995764-36996104)
chr8 (731-901)||(36996568-36996737)
chr8 (735-883)||(34592650-34592797)
chr8 (529-620)||(36996389-36996483)
chr8 (29-66)||(37005723-37005760)
[»] chr4 (13 HSPs)
chr4 (92-355)||(13684103-13684366)
chr4 (727-883)||(33078263-33078418)
chr4 (173-345)||(22192031-22192207)
chr4 (738-873)||(24409757-24409891)
chr4 (755-849)||(26646426-26646519)
chr4 (264-337)||(2749940-2750013)
chr4 (8-66)||(13684404-13684462)
chr4 (303-355)||(13669545-13669597)
chr4 (303-355)||(13682402-13682454)
chr4 (272-335)||(26648930-26648993)
chr4 (8-59)||(22191902-22191953)
chr4 (651-690)||(33078439-33078478)
chr4 (123-185)||(26648784-26648846)
[»] chr7 (2 HSPs)
chr7 (90-346)||(8598506-8598755)
chr7 (8-51)||(8598272-8598315)


Alignment Details
Target: chr8 (Bit Score: 511; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 90 - 974
Target Start/End: Original strand, 37005790 - 37006648
Alignment:
90 aaaaaacctaccaaaacaatcagttcgcccggggtcaagggggtgaattatcgctaatgtgttaagtgcataaaagttcaacattggagtgttgtctatg 189  Q
    |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||| ||   || ||||||||||||||| ||||| ||||||||       
37005790 aaaaaaactaccaaaacaatcagtttgcccggggtcaagtgggtgaattatcgctaatttgcacagagcataaaagttcaaccttggattgttgtctcca 37005889  T
190 tcagcaaataactcaaatcgcaacgaggttcccatccgacgaaccatgaaagtcctgcattg-gcatatcaatctttacttatatctttacaattattca 288  Q
    ||||||||||||| |||| |||||||||||||| |||||||||| ||||||||||| ||||  | |||| ||||||||||||||||||||||||||||||    
37005890 tcagcaaataactgaaattgcaacgaggttcccgtccgacgaactatgaaagtcctacattaagaatataaatctttacttatatctttacaattattca 37005989  T
289 ctcttcaatatataaaatagaaaattaagaaagttgcataccatttatactctccaaggttaatgactaaggaagatgttgggtctgatccacaaatcgg 388  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
37005990 ctcttgaatatataaa-tagaaaattaagaaagttgcacaccatttatactctccaaggttaatgactaaggaagatgctgggtctgatccagaaatcgg 37006088  T
389 ctttggtgtccacagaaattttgaatatatgtttgacacataattaccaggttcaacgatgttataggattcaacactttcttcctccgcctcctccacg 488  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||   ||||||||    
37006089 ctttggtgtccacagaaattttgaatatatgtttgacacatcattaccaggttcaacaatgttagaggattcaacactttcttcctccg---cctccacg 37006185  T
489 tacaaagcagcaaccnnnnnnngtgcatacacattacacttacaattcagtgacagcttttttcaatgcacatgtaacatgctccttttcgtctgcaatt 588  Q
    |||||||||||||||       |||||       ||||  ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
37006186 tacaaagcagcaacctttttttgtgca-------tacatgtacaattcagtgacagcttttttcaatgcaagtgtaacatgctccttttcgtctgcaatt 37006278  T
589 aacccatcaatcttctttttcaaagtagtagccataagcccataacataatgcttagtttgggcatttataaacaagtcattaagcttagctctcactgt 688  Q
    |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37006279 aacccatcaatcttctttttcaaagtagtag--------ccataacataatgcttagtttgggcatttataaacaagtcattaagcttagctctcactgt 37006370  T
689 atccaaaacagaaacagaggtatcctcttccaaatctgcttccaaatctgctgcaattgattcatcatttagctgcagccacaaacagtttctagtaagt 788  Q
    ||||||||||||||||||||||||||            ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
37006371 atccaaaacagaaacagaggtatcct------------cttccaaatctgctgcaatcgattcatcattttgctgcagccacaaacagtttctagtaagt 37006458  T
789 agttaacagaaataagaaaaaaccatctatttacagccaaaatcaaatttaccgtttgcttattctcttctacacatttatcattgttctttggtttagc 888  Q
    || ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
37006459 agctaaca-aaataagaaaaacccatctatttacagccaaaatcaaatttaccgtttgcttattctcttctacacatttatcatttttctttggtttagc 37006557  T
889 ctacaaaacaaga--nnnnnnnnnctttcataaaccgatcaaaatgatgat--acatatacacatatatat-ggtgtgacagtgacacacc 974  Q
    |||||||||||||            ||||||||||||||||||||||||||  ||||||| ||| | ||||  ||||||||||||||||||    
37006558 ctacaaaacaagatttttttttttttttcataaaccgatcaaaatgatgataaacatataaacaaacatatatgtgtgacagtgacacacc 37006648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 8 - 346
Target Start/End: Original strand, 36995764 - 36996104
Alignment:
8 cttacaaactaagtgaaatcgatctgaataaactcaaatgaaatggttagtaatagtaaagcnnnnnnnnnnnnn--aaataataaaaaacctaccaaaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||    
36995764 cttacaaactaagtgaaatcgatctgaataaactcaaatgaaatggttagtaatagtaaagctttttttttttttttaaataataaaaaacctaccaaaa 36995863  T
106 caatcagttcgcccggggtcaagggggtgaattatcgctaatgtgttaagtgcataaaagttcaacattggagtgttgtctatgtcagcaaataactcaa 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
36995864 caatcagttcgcccggggtcaagggggtgaattatcgctaatgtgttaagtgcataaaagttcaacattggattgttgtctatgtcagcaaataactcaa 36995963  T
206 atcgcaacgaggttcccatccgacgaaccatgaaagtcctgcattggcatatcaatctttacttatatctttacaattattcactcttcaatatataaaa 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
36995964 atcgcaacgaggttcccatccgacgaaccatgaaagtcctgcattggcatatcaatctttacttatatctttacaattattcactcttcaatatataaaa 36996063  T
306 tagaaaattaagaaagttgcataccatttatactctccaag 346  Q
    |||||||||||||||||||||||||||||||||||||||||    
36996064 tagaaaattaagaaagttgcataccatttatactctccaag 36996104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 731 - 901
Target Start/End: Original strand, 36996568 - 36996737
Alignment:
731 caaatctgctgcaattgattcatcatttagctgcagccacaaacagtttctagtaagtagttaacagaaataagaaaaaaccatctatttacagccaaaa 830  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||    
36996568 caaatctgctgcaatcgattcatcatttagctgcagccacaaacagtttctagtaagtagttaaga-aaataagaaaaacccatctatttacagccaaaa 36996666  T
831 tcaaatttaccgtttgcttattctcttctacacatttatcattgttctttggtttagcctacaaaacaaga 901  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
36996667 tcaagtttaccgtttgcttattctcttctacacatttatcatttttctttggtttagcctacaaaacaaga 36996737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 735 - 883
Target Start/End: Complemental strand, 34592797 - 34592650
Alignment:
735 tctgctgcaattgattcatcatttagctgcagccacaaacagtttctagtaagtagttaacagaaataagaaaaaaccatctatttacagccaaaatcaa 834  Q
    ||||||||||| ||||| ||||||  ||||||||||||||||||||||  |||||||||||| |||||||||||| ||||||||||||||||||||||||    
34592797 tctgctgcaatcgattcgtcatttttctgcagccacaaacagtttctatcaagtagttaaca-aaataagaaaaacccatctatttacagccaaaatcaa 34592699  T
835 atttaccgtttgcttattctcttctacacatttatcattgttctttggt 883  Q
     |||||||||||||   ||||||||||||||||||||||  ||||||||    
34592698 gtttaccgtttgctccatctcttctacacatttatcatttctctttggt 34592650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 529 - 620
Target Start/End: Original strand, 36996389 - 36996483
Alignment:
529 tacaattcagtgacagcttttttcaatgcacatgtaacatgctcc---ttttcgtctgcaattaacccatcaatcttctttttcaaagtagtagc 620  Q
    |||||||||||||| ||||||||||||||||||| ||||| ||||   | ||  || ||| ||||  |||||||||||| |||||||||||||||    
36996389 tacaattcagtgactgcttttttcaatgcacatgcaacatactcctcttgttgttccgcagttaattcatcaatcttctctttcaaagtagtagc 36996483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 37005723 - 37005760
Alignment:
29 atctgaataaactcaaatgaaatggttagtaatagtaa 66  Q
    ||||||||||||||||||||||| ||||||| ||||||    
37005723 atctgaataaactcaaatgaaatagttagtattagtaa 37005760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 168; Significance: 2e-89; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 92 - 355
Target Start/End: Complemental strand, 13684366 - 13684103
Alignment:
92 aaaacctaccaaaacaatcagttcgcccggggtcaagggggtgaattatcgctaatgtgttaagtgcataaaagttcaacattggagtgttgtctatgtc 191  Q
    ||||||||||  ||||||||||| ||| |  || | |||||||||||||||||| |||| | ||||||||||| |||||| ||||| |||||||| ||||    
13684366 aaaacctacctgaacaatcagttagccggtagttacgggggtgaattatcgctactgtgctcagtgcataaaatttcaaccttggaatgttgtctctgtc 13684267  T
192 agcaaataactcaaatcgcaacgaggttcccatccgacgaaccatgaaagtcctgcattggcatatcaatctttacttatatctttacaattattcactc 291  Q
    |||||||||||||||||| ||||||||||  | || | || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
13684266 agcaaataactcaaatcggaacgaggttctgaaccaatgagctatgaaagtcctgcattggcatatcaatctttacttatatctttacaattattcactc 13684167  T
292 ttcaatatataaaatagaaaattaagaaagttgcataccatttatactctccaaggttaatgac 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
13684166 ttcaatatataaaatagaaaattaagaaagttgcataccatttatactctccaagtttaatgac 13684103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 727 - 883
Target Start/End: Complemental strand, 33078418 - 33078263
Alignment:
727 cttccaaatctgctgcaattgattcatcatttagctgcagccacaaacagtttctagtaagtagttaacagaaataagaaaaaaccatctatttacagcc 826  Q
    ||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||  |||||||||||| |||||||||||| ||||||||||||||||    
33078418 cttccaaatctgctgcaatcgattcatcattttgctgcagccacagacagtttctatcaagtagttaaca-aaataagaaaaacccatctatttacagcc 33078320  T
827 aaaatcaaatttaccgtttgcttattctcttctacacatttatcattgttctttggt 883  Q
    |||||||| |||||||||||||   ||||||||||||||||||||||  ||||||||    
33078319 aaaatcaagtttaccgtttgctccatctcttctacacatttatcatttctctttggt 33078263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 173 - 345
Target Start/End: Original strand, 22192031 - 22192207
Alignment:
173 ttggagtgttgtctatgtcagcaaataactcaaatcgcaacgaggttcccatccgacgaaccatgaaagtcctgcatt----ggcatatcaatctttact 268  Q
    ||||| || ||||| ||||| ||||||||| |||| | |||  ||||||| |||||||||| |||||| |||||||||    ||||||||||||||||||    
22192031 ttggaatgctgtctctgtcaacaaataactgaaattggaacctggttcccctccgacgaactatgaaattcctgcattaattggcatatcaatctttact 22192130  T
269 tatatctttacaattattcactcttcaatatataaaatagaaaattaagaaagttgcataccatttatactctccaa 345  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||    
22192131 tatatctttacaattattcactcttgaatatataaaatagaaaattaagaaatttgcataccatttacactctccaa 22192207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 738 - 873
Target Start/End: Original strand, 24409757 - 24409891
Alignment:
738 gctgcaattgattcatcatttagctgcagccacaaacagtttctagtaagtagttaacagaaataagaaaaaaccatctatttacagccaaaatcaaatt 837  Q
    ||||||||  ||||||||||| |||||||||||||||||||||||||||| |||||||| || ||||||||| ||||| ||||||||||||| ||||  |    
24409757 gctgcaatcaattcatcattttgctgcagccacaaacagtttctagtaagcagttaaca-aagtaagaaaaacccatccatttacagccaaattcaagat 24409855  T
838 taccgtttgcttattctcttctacacatttatcatt 873  Q
    ||||||||||||||||||||||||||||||||||||    
24409856 taccgtttgcttattctcttctacacatttatcatt 24409891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 755 - 849
Target Start/End: Original strand, 26646426 - 26646519
Alignment:
755 atttagctgcagccacaaacagtttctagtaagtagttaacagaaataagaaaaaaccatctatttacagccaaaatcaaatttaccgtttgctt 849  Q
    |||| |||||||||||||||||||||||  |||||||||||| |||||||||||| | ||||||||||||| |||||||| |||||| |||||||    
26646426 attttgctgcagccacaaacagtttctatcaagtagttaaca-aaataagaaaaaccgatctatttacagcaaaaatcaagtttaccttttgctt 26646519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 264 - 337
Target Start/End: Original strand, 2749940 - 2750013
Alignment:
264 ttacttatatctttacaattattcactcttcaatatataaaatagaaaattaagaaagttgcataccatttata 337  Q
    |||||||||||||||| | |||||||||||||||  |||||| ||| |||||||||||||||||||||| ||||    
2749940 ttacttatatctttaccagtattcactcttcaattgataaaacagagaattaagaaagttgcataccatatata 2750013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 13684462 - 13684404
Alignment:
8 cttacaaactaagtgaaatcgatctgaataaactcaaatgaaatggttagtaatagtaa 66  Q
    |||||||||| |||| |||||||||||||||||||||||||||| ||||||| ||||||    
13684462 cttacaaactgagtggaatcgatctgaataaactcaaatgaaatagttagtattagtaa 13684404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 13669597 - 13669545
Alignment:
303 aaatagaaaattaagaaagttgcataccatttatactctccaaggttaatgac 355  Q
    |||||||||||||||||| ||||||||||||||||||||||||| | ||||||    
13669597 aaatagaaaattaagaaatttgcataccatttatactctccaagttgaatgac 13669545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 13682454 - 13682402
Alignment:
303 aaatagaaaattaagaaagttgcataccatttatactctccaaggttaatgac 355  Q
    |||||||||||||||||| ||||||||||||||||||||||||| | ||||||    
13682454 aaatagaaaattaagaaatttgcataccatttatactctccaagttgaatgac 13682402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 272 - 335
Target Start/End: Original strand, 26648930 - 26648993
Alignment:
272 atctttacaattattcactcttcaatatataaaatagaaaattaagaaagttgcataccattta 335  Q
    |||||||||||||||||||||| | || |||||||| |||||||||||||||| ||||| ||||    
26648930 atctttacaattattcactcttgactacataaaataaaaaattaagaaagttgaatacccttta 26648993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 22191902 - 22191953
Alignment:
8 cttacaaactaagtgaaatcgatctgaataaactcaaatgaaatggttagta 59  Q
    |||||||||| |||| |||||||||||||||||||| ||||||| |||||||    
22191902 cttacaaactgagtggaatcgatctgaataaactcagatgaaatagttagta 22191953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 651 - 690
Target Start/End: Complemental strand, 33078478 - 33078439
Alignment:
651 gcatttataaacaagtcattaagcttagctctcactgtat 690  Q
    |||||||||| |||||||||||||||||||||||||||||    
33078478 gcatttataaccaagtcattaagcttagctctcactgtat 33078439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 26648784 - 26648846
Alignment:
123 gtcaagggggtgaattatcgctaatgtgttaagtgcataaaagttcaacattggagtgttgtc 185  Q
    |||| |||||||||||||||||| |||||| ||| ||||||| ||||||| |||| |||||||    
26648784 gtcatgggggtgaattatcgctactgtgttcagtacataaaatttcaacactggattgttgtc 26648846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 90 - 346
Target Start/End: Original strand, 8598506 - 8598755
Alignment:
90 aaaaaacctaccaaaacaatcagttcgcccggggtcaagggggtgaattatcgctaatgtgttaagtgcataaaagttcaacattggagtgttgtctatg 189  Q
    ||||||||||||||||||  ||||| || ||| || ||||| ||||||||||||||||||||| ||| ||||||| | |||| ||||| |||||||| ||    
8598506 aaaaaacctaccaaaacatacagttagctcggagtgaagggagtgaattatcgctaatgtgttcagtccataaaattccaaccttggaatgttgtctttg 8598605  T
190 tcagcaaataactcaaatcgcaacgaggttcccatccgacgaaccatgaaagtcctgcattggcatatcaatctttacttatatctttacaattattcac 289  Q
    |||||||||||||||||  ||||||||||||  |  |||| |||  |||||||||||||| ||||||||||||||||||||||||||||        |||    
8598606 tcagcaaataactcaaaatgcaacgaggttctgaagcgaccaactttgaaagtcctgcataggcatatcaatctttacttatatcttta-------acac 8598698  T
290 tcttcaatatataaaatagaaaattaagaaagttgcataccatttatactctccaag 346  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
8598699 tcttgaatatataaaatagaaaataaagaaagttgcataccatttatactctccaag 8598755  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 8598272 - 8598315
Alignment:
8 cttacaaactaagtgaaatcgatctgaataaactcaaatgaaat 51  Q
    |||||||||| |||| ||||||||||| ||||||||||||||||    
8598272 cttacaaactgagtggaatcgatctgattaaactcaaatgaaat 8598315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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