View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4614-Insertion-5 (Length: 760)

Name: NF4614-Insertion-5
Description: NF4614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4614-Insertion-5
NF4614-Insertion-5
[»] chr2 (1 HSPs)
chr2 (7-760)||(17800597-17801348)


Alignment Details
Target: chr2 (Bit Score: 673; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 7 - 760
Target Start/End: Complemental strand, 17801348 - 17800597
Alignment:
Q  7 aaaaacatcgaaaatcattatgctgtagccaagatcgtggaccgttgcttaaaaccctactttagtgtaactaatctcttgcatgaggcaatgagccatt 106  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17801348 aaaaacatcgaaaatcaatatgttgtagccaagatcgcggaccgttgcttaaaaccctactttagtgtaactattctcttgcatgaggcaatgagccatt 17801249  T
Q  107 gcctttctccttgatggagttaagtttt-gtagcctccattcacccctaagacgagcaacgaatgttgcagctttcgcattcacgtcaggactgggtcag 205  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||    
T  17801248 gcctttctccttgatggagttaagtttttgtagcctccattcacccctaagacgagcaatgaatgttgcagctttcgcattcacgtctggactgggacag 17801149  T
Q  206 aaaacgggccctgtcacatcgccgttatgattcacagcggcaatggtttccgtaacttccacatcaatgtgctcacgctccggtgatgtacttctcgagc 305  Q
    ||||| ||||| |||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17801148 aaaacaggcccagtcacatcgccgttatgattcacaacagcaatggtttccgttacttccacatcaatgtgctcacgctccggtgatgtacttctcgagc 17801049  T
Q  306 tctggttacttcgaatcttaacaaaatcgccacgaactgcaaacttcatcgccggcattttgaatggtggtaaaggaggcggaatggggatcaatggcga 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17801048 tctggttacttcgaatcttaacaaaatcgccacgaactgcaaacttcatcgccggcattttgaatggtggtaaaggaggcggaatggggatcaatggcga 17800949  T
Q  406 ctggctgcaggcattgaagttttcaaccgtttcgttgatgaagttgcttgatttgttcggcaatggcggctttgtgtggtttctccgacgtgatggtgca 505  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17800948 ctggctgccggcattgaagttttcaaccgtttcgttgatgaagttgcttgatttgtttggcaatggcggctttgtgtggtttctccgacgtgatggtgca 17800849  T
Q  506 ggtggaggagttggtggtggcggagggatatgtttctttggtttagacgatctcctagatggcggaggtggcggcggcgctggcactgaatggattttct 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17800848 ggtggaggagttggtggtggcggagggatatgtttctttggtttagacgatctcctagatggcggaggtggcggcggcgctggcactgaatggattttct 17800749  T
Q  606 tactcttgccgtgactttttctgaatatactgtgaaaaactggtggaggtggtggtggaggaggcggtggcgtcgtcggtatcggtggtggcgctgttgt 705  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  17800748 tactcttgccgtgactttttctgaatatactgtgaaaaactgatggaggtggtggtggaggaggcggtggcgtcgtcggtatcg---gtggcgctgttgt 17800652  T
Q  706 attgtttgttaactcctccacattatcgcaatggtgattatgatcgtttttcggt 760  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17800651 attgtttgttaactcctccacattatcgcaatggtgattatgatcgtttttcggt 17800597  T

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