View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4614-Insertion-6 (Length: 599)
Name: NF4614-Insertion-6
Description: NF4614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4614-Insertion-6 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 7 - 599
Target Start/End: Complemental strand, 28494092 - 28493503
Alignment:
| Q |
7 |
atataccagaatcatgatgatctatcatgattttcaaaagttgtattttatagttactgcaaaatcacggtgaatcaccgagaatcagtaccactatcgt |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| ||| ||||||||||||| ||| || |||||||||||||| |||| |
|
|
| T |
28494092 |
atatgccagaatcatgatgatctatcatgattttcaaaagctgtactttatagtttctgtaaaatcacggtgagtcatcgggaatcagtaccactgtcgt |
28493993 |
T |
|
| Q |
107 |
tctgatctcacatataagtaaaaacatttgttaaatagagtttgtatatttatttcaaatttcgaccacatacatcaaattatttaactatattttacat |
206 |
Q |
| |
|
|||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28493992 |
tctgat-tcatatataagtaaaaacattggttaaatagagtttgtatatttatttcaaatttcgaccacatacatcaaattatttaactattttttacat |
28493894 |
T |
|
| Q |
207 |
ttatttgagatttgagagagtactttagactttgtaggatgtgggagtagtacctgtttgttgtgtccttcaatagctaaagttgggtccttaaactata |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28493893 |
gtatttgagatttgagagagtactttagactttgtaggatgtggaagtagtacctgtttggtgtgtccttcaatagttaaagttgggtccttaaactata |
28493794 |
T |
|
| Q |
307 |
tataagtataatgaacaatctatatagtatnnnnnnntggtcaatttaattcatctttaagtatatgaaaaatcctatgctnnnnnnnngtatatgaaat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28493793 |
tataagtataatgaacaatctatatagtataaaaaattggtcaatttaattcatctttaagtatatgaaaaatcctatgctaaaaaaaagtatatgaaaa |
28493694 |
T |
|
| Q |
407 |
attcatcaatttaatctttaacatcttattaaaaaagattaaattaagggaattcatctattttgagcactaattactattannnnnnngtcaaatagtt |
506 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||| |
|
|
| T |
28493693 |
attcatcaatttaatctttcacatcttattaataaagattaaattaagggaattcatcaattttgagcaataattactatta-ttttttgtcaaatagtt |
28493595 |
T |
|
| Q |
507 |
taatgtttagaaattcatcaatttattttttatctctgtatgattggttgttatcaggtggaggacgcaagtcatttgtttttatagtgcaga |
599 |
Q |
| |
|
||||| ||||||||||||||||||| |||| |||| ||| || || |||| |||| |||||||||| |||||||||||||||| ||||||| |
|
|
| T |
28493594 |
taatggttagaaattcatcaattta-ttttcatctttgtgtgtctgattgtggtcagatggaggacgcgagtcatttgtttttatcgtgcaga |
28493503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University