View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4614-Insertion-7 (Length: 596)

Name: NF4614-Insertion-7
Description: NF4614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4614-Insertion-7
NF4614-Insertion-7
[»] chr6 (8 HSPs)
chr6 (367-596)||(31966573-31966802)
chr6 (167-301)||(31967023-31967157)
chr6 (367-596)||(31959583-31959811)
chr6 (8-117)||(31967208-31967317)
chr6 (12-117)||(31960154-31960263)
chr6 (239-301)||(31960019-31960081)
chr6 (252-301)||(31963117-31963166)
chr6 (168-208)||(31960084-31960124)


Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 367 - 596
Target Start/End: Complemental strand, 31966802 - 31966573
Alignment:
Q  367 tactaaatgtatgcaatccaaaaccataagaatgacttaaaattaattgtctatattgctcttttcaagctatgcaaatttaataagattcaaataatac 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31966802 tactaaatgtatgcaatccaaaaccataagaatgacttaaaattaattgtctatattgctcttttcaagctatgcaaatttaataagattcaaataatac 31966703  T
Q  467 aattcttaacaacattccatcttatctcaatcatcctagttatcattattctttgctcgaggatcatcaaaactaatgataacctgaaaaatctgcatca 566  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31966702 aattcttaacaacattccatcttatctcaatcatcctagttatcattattctttgctcgaggatcatcaaaactaatgataacctgaaaaatctgcatca 31966603  T
Q  567 atgaactttagtcttttatgtctggctttg 596  Q
    | ||||||||||||||||||||||||||||    
T  31966602 acgaactttagtcttttatgtctggctttg 31966573  T

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Target: chr6; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 167 - 301
Target Start/End: Complemental strand, 31967157 - 31967023
Alignment:
Q  167 tgtgctcgccaaatttgtttatattaaaattgatctctaaatataatattttgtccttattttgagaagaaataaaattaaatattctacattattatag 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31967157 tgtgctcgccaaatttgtttatattaaaattgatctctaaatataatattttgtacttattttgagaagaaataaaattaaatattctacattattatag 31967058  T
Q  267 ggactgtttcaaaacgactaaatttttcaaggagt 301  Q
    |||||||||||||||||||||||||||||||||||    
T  31967057 ggactgtttcaaaacgactaaatttttcaaggagt 31967023  T

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Target: chr6; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 367 - 596
Target Start/End: Complemental strand, 31959811 - 31959583
Alignment:
Q  367 tactaaatgtatgcaatccaaaaccataagaatgacttaaaattaattgtctatattgctcttttcaagctatgcaaatttaataagattcaaataatac 466  Q
    |||||||||||| | ||| ||| |||||||||||||||||||||||  ||||| |||||||||||||| ||||||||||||||||||| |||||| ||||    
T  31959811 tactaaatgtattctatcaaaatccataagaatgacttaaaattaaacgtctaaattgctcttttcaaactatgcaaatttaataagaatcaaatgatac 31959712  T
Q  467 aattcttaacaacattccatcttatctcaatcatcctagttatcattattctttgctcgaggatcatcaaaactaatgataacctgaaaaatctgcatca 566  Q
    |||||||||||| ||||| | |||||| ||  | | |||| ||||||||||||||||| | ||||||||||||| |||| ||||||||||||||||||||    
T  31959711 aattcttaacaatattccct-ttatctaaacaaacttagtcatcattattctttgctctaagatcatcaaaactgatgacaacctgaaaaatctgcatca 31959613  T
Q  567 atgaactttagtcttttatgtctggctttg 596  Q
    | ||||||||||||||  ||||||||||||    
T  31959612 acgaactttagtctttcttgtctggctttg 31959583  T

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Target: chr6; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 31967317 - 31967208
Alignment:
Q  8 caaacaacaccaaattcaaatccaatttgaaatgaaagaatttttattttaaatggatgatttgtagtcacttttatatatcaaggtttattcttttgaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31967317 caaacaacaccaaattcaaatccaatttgaaatgaaagaatttttattttaaatggatgatttgtagtcacttttatatatcaaggtttattctttttaa 31967218  T
Q  108 atagtacaca 117  Q
    ||||||||||    
T  31967217 atagtacaca 31967208  T

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Target: chr6; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 31960263 - 31960154
Alignment:
Q  12 caacaccaaattcaaatccaatttgaaatgaaaga----atttttattttaaatggatgatttgtagtcacttttatatatcaaggtttattcttttgaa 107  Q
    |||||||||||||||| |||||||| ||| |||||     ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  31960263 caacaccaaattcaaaaccaatttgtaatcaaagatttttttttttttttaaatggatcatttgtagtcacttttatatatcaaggtttattcttttcaa 31960164  T
Q  108 atagtacaca 117  Q
    ||||||||||    
T  31960163 atagtacaca 31960154  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 31960081 - 31960019
Alignment:
Q  239 taaaattaaatattctacattattatagggactgtttcaaaacgactaaatttttcaaggagt 301  Q
    ||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||    
T  31960081 taaaattaaatattctacattattataaggacagtttcaaaatgactaaatttttcaaggagt 31960019  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 31963166 - 31963117
Alignment:
Q  252 tctacattattatagggactgtttcaaaacgactaaatttttcaaggagt 301  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  31963166 tctacattattatagggacggtttcaatacgactaaatttttcaaggagt 31963117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 31960124 - 31960084
Alignment:
Q  168 gtgctcgccaaatttgtttatattaaaattgatctctaaat 208  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  31960124 gtgctccccaaatttgtttatattaaaattgatctctaaat 31960084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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