View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4614-Insertion-9 (Length: 490)
Name: NF4614-Insertion-9
Description: NF4614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4614-Insertion-9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 8 - 490
Target Start/End: Complemental strand, 39081159 - 39080671
Alignment:
| Q |
8 |
cttatatagacaactaactgtggtgagaggatcctgaatttatgatttaaaaaatatgtttatcaaatgttatttgtcaatttagggaccctatagttaa |
107 |
Q |
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| T |
39081159 |
cttatatagacaactaactgtggtgagaggatcctgaatttattatttaaaaaatatgtttatcaaatgttatttgtgaatttagggaccctatagttaa |
39081060 |
T |
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| Q |
108 |
ttccctatatatgaggcatctttcttcc-aaggtcaactcatacacggttaaggagctcgatagtataccattacataaataactgattaattggttaac |
206 |
Q |
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| T |
39081059 |
ttccctatatatgaggcatctttcttccaaaggtcaactcatacacggttaaggagctcgatagtataccattacataaataactgattaattagttaac |
39080960 |
T |
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| Q |
207 |
aaattttccttttc---aggagttaggaggacattattaattagaaaatatagtaataaagaaaaagaattacaacacaataaaatttgagc----tgag |
299 |
Q |
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| T |
39080959 |
aaattttccttttcaggaggagttaggaggacattattaattagaaaatatagtaataaagaaaaagaattacaacacaataaaatttgagctatatgag |
39080860 |
T |
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| Q |
300 |
ttttctgtctttatataagaaagtaccctttggagatgactgcatcagaatctcccactttgnnnnnnncttatatatcaatcataaattatgctgcata |
399 |
Q |
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| T |
39080859 |
ttttctgtctttatataagaaagtaccctttggagatgacagcatcagaatctcccactttgtttttttcttatatatcaatcatcaattatgctgcata |
39080760 |
T |
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| Q |
400 |
taatattggtcgttaaatgaggtaaaattgtgtttgttatttatgaatgacatatttcacacattttccttgtacatcctatatcatgtta |
490 |
Q |
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| T |
39080759 |
tagcattggtcgttaaatgaggtaaaattgtgtttgttatttatgaatgacatattt--cacattttccttgtacatcctatatcatgtta |
39080671 |
T |
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