View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4614_high_3 (Length: 329)
Name: NF4614_high_3
Description: NF4614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4614_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 28 - 316
Target Start/End: Complemental strand, 38659542 - 38659250
Alignment:
| Q |
28 |
tattcatcatccaaccaacaacagtgaaggatttcaaagcnnnnnnnnnnnnn----cttagttcatcatccaacatgaaacaaaacccaataataaaca |
123 |
Q |
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| T |
38659542 |
tattcatcatccaaccaacaacagtgaaggatttcaaagcaaaaaaaaaaaaaaaaacttagttcatcatccaacatgaaacaaaacccaataataaaca |
38659443 |
T |
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| Q |
124 |
taattcaaatacagatccacatgaacaaaaaggaagaaattaattcatcatccaacaagaacaaagaggtaaatcattccccaacaaaactcactctctc |
223 |
Q |
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| T |
38659442 |
taattcaaatacagatccacatgaacaaaaaggaagaaattaattcatcatccaacaagaacaaagaggtaaatcattccccaacaaaactcactctctc |
38659343 |
T |
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| Q |
224 |
ggtccccaatttttccctaacaccaccacggtttctttttcttctctgttcattatttccacttccctctttggatccaacacacttcaatcc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38659342 |
ggtccccaatttttccctaacaccaccacggtttctttttcttctctgttcattatttccacttccctctttggatccaatacacttcaatcc |
38659250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 42444913 - 42444851
Alignment:
| Q |
209 |
aaaactcactctctcggtccccaatttttccctaacaccaccacggtttctttttcttctctg |
271 |
Q |
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|||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
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| T |
42444913 |
aaaaatcactctctcggtccccaatttttccgtaacaaaaccactatttctttttcttctctg |
42444851 |
T |
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