View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4614_high_4 (Length: 300)
Name: NF4614_high_4
Description: NF4614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4614_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 8698324 - 8698586
Alignment:
| Q |
20 |
tagtccagaattttgttgtagataatgttgttttgaatgaataatacttgaagaatccatttcttggtttcttcttagctcttcatacatagcacccatc |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8698324 |
tagtccagaattttgttgttgataatgttgttttgaatgaataatacttgaagaatccatttcttggtttcttcttagctcttcatacatagcacccatc |
8698423 |
T |
|
| Q |
120 |
ttgcttatacaattatctgcataaaa-aatatctttataatttcttcctataaactaagcaactttttgacttggaacataaaccggatgctgcgactgc |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
8698424 |
ttgcttatacaattatctgcataaaaaaatatctttataatttcttcctataaactaagcaactttttgacttgcaacataaaccgaatgctgcgactgc |
8698523 |
T |
|
| Q |
219 |
aatttaaaaccttttgtgtgataacctcaaacagttaaactcatggttttatattgtggtctg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8698524 |
aatttaaaaccttttgtgtgataacctcaaacagttaaactcatggttttatattgcggtctg |
8698586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 9050211 - 9050473
Alignment:
| Q |
20 |
tagtccagaattttgttgtagataatgttgttttgaatgaataatacttgaagaatccatttcttggtttcttcttagctcttcatacatagcacccatc |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9050211 |
tagtccagaattttgttgttgataatgttgttttgaatgaataatacttgaagaatccatttcttggtttcttcttagctcttcatacatagcacccatc |
9050310 |
T |
|
| Q |
120 |
ttgcttatacaattatctgcataaaa-aatatctttataatttcttcctataaactaagcaactttttgacttggaacataaaccggatgctgcgactgc |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
9050311 |
ttgcttatacaattatctgcataaaaaaatatctttataatttcttcctataaactaagcaactttttgacttgcaacataaaccgaatgctgcgactgc |
9050410 |
T |
|
| Q |
219 |
aatttaaaaccttttgtgtgataacctcaaacagttaaactcatggttttatattgtggtctg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9050411 |
aatttaaaaccttttgtgtgataacctcaaacagttaaactcatggttttatattgcggtctg |
9050473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University