View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4614_low_1 (Length: 423)
Name: NF4614_low_1
Description: NF4614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4614_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 28494489 - 28494089
Alignment:
| Q |
1 |
ggttgaagaagagggaaggatctatagggacaatattaagaacatgaaggatttgtttgtcaatcctgaaagacaagatagatatgttactagcttgttg |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28494489 |
ggttgaagaagagggaaggatctatagggataatattaagaacatgaaggatttgtttgtcaatcctgaaagacaagatagatatgttactagcttgttg |
28494390 |
T |
|
| Q |
101 |
gaccaccttagaagtattccttagttttaattaagtaatttcttctttcttgttactgcattcattaataaggtccaccaaatttctctatctttcattt |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28494389 |
gaccaccttagaattattccttagttttaattaagtaatttcttcttccttgttactgcattcattaataaggtccaccaaatttctttatctttcattt |
28494290 |
T |
|
| Q |
201 |
atattcaatcttgttgttcacatattgttagaactaaaaagattcgtaagccaagactttcaatgattttgatgatagcacacggattgttagtgaatat |
300 |
Q |
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||||||||||| ||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28494289 |
atattcaatct---tgttcacatattgttagaagtaaagagattggtaagccaagactttcaatgattttgatgatagcacacggattgttagggaatat |
28494193 |
T |
|
| Q |
301 |
gttatcgtttgctattcagcaaagttatttcaagtgtggacttttagattttcgagtgaatgattcaaatgattaaatttatc-tttgatatttcggtgg |
399 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| |||||| |||||||||| ||||| |
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| T |
28494192 |
gttatggtttgctattcagcaaagttatttcaagagtggacttttaaattttcgtgtgaatgattcaaatgattaagtttatcttttgatattttggtgg |
28494093 |
T |
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| Q |
400 |
atat |
403 |
Q |
| |
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|||| |
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| T |
28494092 |
atat |
28494089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 28507035 - 28506921
Alignment:
| Q |
1 |
ggttgaagaagagggaaggatctatagggacaatattaagaacatgaaggatttgtttgtcaatcctgaaagacaagatagatatgttactagcttgttg |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| || |||||||||||||||||||| |||||||||||| |||||||||||||| |||||||| || ||||||| |
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| T |
28507035 |
ggttgaagaagagggaatgatctatagagaaaatattaagaacatgaaggacttgtttgtcaatattgaaagacaagataaatatgttaataacttgttg |
28506936 |
T |
|
| Q |
101 |
gaccaccttagaagt |
115 |
Q |
| |
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|||||||| |||| |
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| T |
28506935 |
agccaccttacaagt |
28506921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 156 - 340
Target Start/End: Complemental strand, 28506834 - 28506647
Alignment:
| Q |
156 |
ctgcattcattaataaggtccaccaaatttctctatctttcatttatattcaatctt---gttgttcacatattgttagaactaaaaagattcgtaagcc |
252 |
Q |
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||||||||||||||||||| |||||||||||| |||||||| |||| || | | || ||| |||| || ||||||||||||| ||||| |||||| |
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| T |
28506834 |
ctgcattcattaataaggttcaccaaatttctttatctttcttttagttttattattatggttattcaaatgctgttagaactaaagagattgataagcc |
28506735 |
T |
|
| Q |
253 |
aagactttcaatgattttgatgatagcacacggattgttagtgaatatgttatcgtttgctattcagcaaagttatttcaagtgtgga |
340 |
Q |
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| | |||||||||||||||||||| |||| ||| | |||||||| |||||| ||| | ||||| ||||||||||||||||||||| |
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| T |
28506734 |
gatagtttcaatgattttgatgataatacacttattctaagtgaataagttatcctttcccattcaacaaagttatttcaagtgtgga |
28506647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 28491168 - 28491056
Alignment:
| Q |
3 |
ttgaagaagagggaaggatctatagggacaatattaagaacatgaaggatttgtttgtcaatcctgaaagacaagatagatatgttactagcttgttgga |
102 |
Q |
| |
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|||||||||| || ||||| |||||||| |||||||| | ||||||| |||||||||||| ||||||||||||||||||| || | |||||| || |
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| T |
28491168 |
ttgaagaagaagggaggatatatagggaaaatattaaagaggtgaaggacttgtttgtcaatattgaaagacaagatagatatattgacaacttgttaga |
28491069 |
T |
|
| Q |
103 |
ccaccttagaagt |
115 |
Q |
| |
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|||||||| |||| |
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| T |
28491068 |
ccaccttaaaagt |
28491056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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