View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4614_low_2 (Length: 393)

Name: NF4614_low_2
Description: NF4614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4614_low_2
NF4614_low_2
[»] chr6 (3 HSPs)
chr6 (16-181)||(5580701-5580866)
chr6 (247-375)||(5580932-5581060)
chr6 (329-377)||(10338610-10338657)
[»] chr5 (1 HSPs)
chr5 (16-143)||(20178025-20178152)
[»] chr7 (2 HSPs)
chr7 (16-173)||(5018486-5018643)
chr7 (328-368)||(43395521-43395560)
[»] chr2 (1 HSPs)
chr2 (19-172)||(25633963-25634116)
[»] chr8 (1 HSPs)
chr8 (328-369)||(10440373-10440413)
[»] chr1 (1 HSPs)
chr1 (336-369)||(2642911-2642944)
[»] chr3 (1 HSPs)
chr3 (335-371)||(17105269-17105304)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 5580701 - 5580866
Alignment:
Q  16 tcacgaagactaaaagggtatccacgaacaaaatcagcaccttctctaaaaggatcataaagggtattgaaaaacaatggagttgaaggacacaaaaggt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5580701 tcacgaagactaaaagggtatccacgaacaaaatcagcaccttctctaaaaggatcataaagggtattgaaaaacaatggagttgatggacacaaaaggt 5580800  T
Q  116 tcttaatgtgctgctcaagtgcattgatttgttttccagatggatcattggcaacctaaggcacac 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5580801 tcttaatgtgctgctcaagtgcattgatttgttttccagatggatcattggcaacctaaggcacac 5580866  T

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Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 247 - 375
Target Start/End: Original strand, 5580932 - 5581060
Alignment:
Q  247 ttctatggttgaatgtacattatttaatttagatcactagtctcaaaaactatgaatcactaatacagacatcagatacgtgacatcgataataatttaa 346  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5580932 ttctatggttgaatgtacattattttatttagattactagtctcaaaaactatgaatcactaatacagacaccagatacgtgacatcgataataatttaa 5581031  T
Q  347 agaaaataaaagtgattgaatgtaattac 375  Q
    |||||||||||||||||||||||||||||    
T  5581032 agaaaataaaagtgattgaatgtaattac 5581060  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 10338610 - 10338657
Alignment:
Q  329 acatcgataataatttaaagaaaataaaagtgattgaatgtaattactg 377  Q
    |||| ||||||||||||| ||||||| ||||||||||||||||| ||||    
T  10338610 acattgataataatttaa-gaaaatagaagtgattgaatgtaatcactg 10338657  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 20178152 - 20178025
Alignment:
Q  16 tcacgaagactaaaagggtatccacgaacaaaatcagcaccttctctaaaaggatcataaagggtattgaaaaacaatggagttgaaggacacaaaaggt 115  Q
    ||||||||||| |||||||||||||| || ||||| ||||| |||||  | ||||| |||||||| ||||| || |||||||| || ||||  |  || |    
T  20178152 tcacgaagactgaaagggtatccacggacgaaatcggcaccgtctctgtatggatcgtaaagggtgttgaagaaaaatggagtggatggactgaggagat 20178053  T
Q  116 tcttaatgtgctgctcaagtgcattgat 143  Q
    ||||||||||||||||||||||||||||    
T  20178052 tcttaatgtgctgctcaagtgcattgat 20178025  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 5018486 - 5018643
Alignment:
Q  16 tcacgaagactaaaagggtatccacgaacaaaatcagcaccttctctaaaaggatcataaagggtattgaaaaacaatggagttgaaggacacaaaaggt 115  Q
    ||||| ||||| || ||||| |||||||| ||||| |||||||||||  | || ||||| || || |||||||| || || || || || || | |||||    
T  5018486 tcacggagactgaaggggtagccacgaacgaaatctgcaccttctctgtatggttcatagagagtgttgaaaaagaaaggtgtggatgggcagagaaggt 5018585  T
Q  116 tcttaatgtgctgctcaagtgcattgatttgttttccagatggatcattggcaaccta 173  Q
    |||| || |||||||||||||||||||| | ||| ||||  |||||||||||||||||    
T  5018586 tcttgatatgctgctcaagtgcattgatctttttcccagtaggatcattggcaaccta 5018643  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 43395521 - 43395560
Alignment:
Q  328 gacatcgataataatttaaagaaaataaaagtgattgaatg 368  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  43395521 gacatcgataataatttaat-aaaataaaagtgattgaatg 43395560  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 25633963 - 25634116
Alignment:
Q  19 cgaagactaaaagggtatccacgaacaaaatcagcaccttctctaaaaggatcataaagggtattgaaaaacaatggagttgaaggacacaaaaggttct 118  Q
    |||||||| || || || || ||||||||||| |||||||||||| | || ||||| || || ||||| || ||||| ||||| |||  ||  | |||||    
T  25633963 cgaagactgaacggatagccgcgaacaaaatctgcaccttctctatatgggtcatatagagtgttgaagaaaaatggggttgatggagtcagcaagttct 25634062  T
Q  119 taatgtgctgctcaagtgcattgatttgttttccagatggatcattggcaacct 172  Q
    ||||||||||||  |||||||  |||| ||| ||||||||||| ||||||||||    
T  25634063 taatgtgctgctgcagtgcatcaatttctttgccagatggatctttggcaacct 25634116  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 10440373 - 10440413
Alignment:
Q  328 gacatcgataataatttaaagaaaataaaagtgattgaatgt 369  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  10440373 gacatcgataataatttaa-gaaaataaaagtgattgaatgt 10440413  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 369
Target Start/End: Complemental strand, 2642944 - 2642911
Alignment:
Q  336 taataatttaaagaaaataaaagtgattgaatgt 369  Q
    |||||||||||||||||| |||||||||||||||    
T  2642944 taataatttaaagaaaatgaaagtgattgaatgt 2642911  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 17105269 - 17105304
Alignment:
Q  335 ataataatttaaagaaaataaaagtgattgaatgtaa 371  Q
    |||||||||||| ||||||||||||||||||||||||    
T  17105269 ataataatttaa-gaaaataaaagtgattgaatgtaa 17105304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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