View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4615-Insertion-10 (Length: 235)
Name: NF4615-Insertion-10
Description: NF4615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4615-Insertion-10 |
 | |
|
| [»] scaffold0902 (1 HSPs) |
| | |
|
| [»] scaffold1801 (1 HSPs) |
| | |
|
| [»] scaffold1176 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0902 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 2780 - 2562
Alignment:
| Q |
8 |
agaaacacacacataataaaaacataactgccgataatcactatcacaagcagtctaatacaaataaatcctagttgaagcctctagctagttatagaag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2780 |
agaaacacacacataataaaaacataactgccgataatcactatcataagcagtctaatacaaataaatcctagttgaagcctctagctagttatagaag |
2681 |
T |
|
| Q |
108 |
aaaaataaaagtaactccatcaatgnnnnnnngattataatggacaaaagtaattgaagggaaaccataatcaaaaactgaacaaacacaaggaaaatta |
207 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2680 |
aaaaataaaagtaactccatcgatgttttttttattataatggacaaaagtaattgaagggaaaccataatcaaaaactgaacaaacacaaggaaaatca |
2581 |
T |
|
| Q |
208 |
ttcttagttttgtttggta |
226 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2580 |
ttcttagttttgtttggta |
2562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 14247888 - 14247819
Alignment:
| Q |
156 |
agtaattgaagggaaaccataatcaaaaactgaacaaacacaaggaaaattattcttagttttgtttggt |
225 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| ||| ||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
14247888 |
agtaattgaatggaaatcataatcaaaaaccgaataaacacatggaaaattatttttagttttgtttggt |
14247819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 14316491 - 14316401
Alignment:
| Q |
99 |
ttatagaagaaaaataaaagtaactccatcaatgnnnnnnngattataatggacaaa----agtaattgaagggaaaccataatcaaaaac |
185 |
Q |
| |
|
|||| |||||| || |||| |||||||||||||| |||||| ||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
14316491 |
ttattgaagaagaaaaaaattaactccatcaatgttttttcgattatgatggacaaatgagagtaattgaatggaaaccataatcaaaaac |
14316401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1801 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1801
Description:
Target: scaffold1801; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 565 - 622
Alignment:
| Q |
8 |
agaaacacacacataataaaaacataactgccgataatcactatcacaagcagtctaa |
65 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
565 |
agaaacacacgcataataaaaacataactgcccataattgctatcataagcagtctaa |
622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 1853 - 1897
Alignment:
| Q |
182 |
aaactgaacaaacacaaggaaaattattcttagttttgtttggta |
226 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1853 |
aaactgaataaacacaaggaaaattatttttagttttgtttggta |
1897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University