View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4615-Insertion-12 (Length: 147)
Name: NF4615-Insertion-12
Description: NF4615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4615-Insertion-12 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0268 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 6e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 6e-69
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 19456939 - 19457078
Alignment:
| Q |
8 |
gattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagtcgatctttcctccga |
107 |
Q |
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| T |
19456939 |
gattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgctgaagaagtcgatctttcctccga |
19457038 |
T |
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| Q |
108 |
tctcaagcactggcaaaacctcaccgacggggaacgccac |
147 |
Q |
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| T |
19457039 |
tctcaagcactggcaaaacctcaccgacggcgaacgccac |
19457078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268 (Bit Score: 120; Significance: 9e-62; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 120; E-Value: 9e-62
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 22428 - 22567
Alignment:
| Q |
8 |
gattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagtcgatctttcctccga |
107 |
Q |
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| T |
22428 |
gattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttcctccga |
22527 |
T |
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| Q |
108 |
tctcaagcactggcaaaacctcaccgacggggaacgccac |
147 |
Q |
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| T |
22528 |
tctcaagcactggaacaacctcacagacggcgaacgccac |
22567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 9e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 9e-62
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 10197660 - 10197521
Alignment:
| Q |
8 |
gattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagtcgatctttcctccga |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10197660 |
gattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttcctccga |
10197561 |
T |
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| Q |
108 |
tctcaagcactggcaaaacctcaccgacggggaacgccac |
147 |
Q |
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| T |
10197560 |
tctcaagcactggaacaacctcacagacggcgaacgccac |
10197521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 1e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 25026152 - 25026013
Alignment:
| Q |
8 |
gattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagtcgatctttcctccga |
107 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25026152 |
gattctgtatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctctttctggaccgccgaagaagtcgatctttcctccga |
25026053 |
T |
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| Q |
108 |
tctcaagcactggcaaaacctcaccgacggggaacgccac |
147 |
Q |
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||| | |||||| | |||||||||||||| ||||||||| |
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| T |
25026052 |
tcttcaacactggaacaacctcaccgacggcgaacgccac |
25026013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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