View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4615-Insertion-13 (Length: 73)
Name: NF4615-Insertion-13
Description: NF4615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4615-Insertion-13 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 68; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-31
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 42781185 - 42781252
Alignment:
| Q |
6 |
catcttcagtgcaattccagcaaaagctatatgaacagaggcaagatacgtcataattttcaccacca |
73 |
Q |
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| T |
42781185 |
catcttcagtgcaattccagcaaaagctatatgaacagaggcaagatacgtcataattttcaccacca |
42781252 |
T |
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Target: chr3 (Bit Score: 68; Significance: 4e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-31
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 29553535 - 29553468
Alignment:
| Q |
6 |
catcttcagtgcaattccagcaaaagctatatgaacagaggcaagatacgtcataattttcaccacca |
73 |
Q |
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| T |
29553535 |
catcttcagtgcaattccagcaaaagctatatgaacagaggcaagatacgtcataattttcaccacca |
29553468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 29538675 - 29538608
Alignment:
| Q |
6 |
catcttcagtgcaattccagcaaaagctatatgaacagaggcaagatacgtcataattttcaccacca |
73 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29538675 |
catcttcagtgcaattccagcaaaagctatatgaacagaggcaagatacgtcataattttcatcacca |
29538608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 42189875 - 42189821
Alignment:
| Q |
19 |
attccagcaaaagctatatgaacagaggcaagatacgtcataattttcaccacca |
73 |
Q |
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| T |
42189875 |
attccagcaaaagctatatgaacagaggcaagatacgtcataattttcaccacca |
42189821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 25208042 - 25207992
Alignment:
| Q |
19 |
attccagcaaaagctatatgaacagaggcaagatacgtcataattttcacc |
69 |
Q |
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|||||| ||||||||||| |||||||||||||| || ||||||||| |||| |
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| T |
25208042 |
attccaacaaaagctatacgaacagaggcaagagacatcataatttccacc |
25207992 |
T |
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