View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4615-Insertion-2 (Length: 1110)
Name: NF4615-Insertion-2
Description: NF4615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4615-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 8 - 523
Target Start/End: Original strand, 16200358 - 16200872
Alignment:
| Q |
8 |
gacacaactaataatttgagatacttaaggtaattaaattaaatgtaaccacatttgtcggtgtctgacatgctttcaatccgaaaagtcaatgctacat |
107 |
Q |
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| T |
16200358 |
gacacaactaataatttgagatacttaaggtaattaaattaaatgtaaccacatttgtcggtgtccgacacgctttcaatccaaaaagtcaatgctacat |
16200457 |
T |
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| Q |
108 |
acattcatagttgaattgacttcaaacaatcctatttcattgccagtacaaatatcataggataaaagaagatataatcttcaacaatcaacaaaacaca |
207 |
Q |
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| T |
16200458 |
acattcatagttgaattgacttcaaacaatcctatttcattgccagtacatatatcataggataaaagaagatataatcttcaacaatcaacaaaacaca |
16200557 |
T |
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| Q |
208 |
cattataatattaataaaataccaataaacaaagtcaaaaagaatcttttaccatcagtaggatcagtaagagaacttgaaatctgaattatacaaagca |
307 |
Q |
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| T |
16200558 |
cattataatattaataaaataccaataaacaaagtcagaaagaatcttttaccatcagtaggatcagtaagagaacttgaaatctgaattatacaaagca |
16200657 |
T |
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| Q |
308 |
acaaaaatcccaataaaacatctccatagatcttcaaactagatctcttccaatccattgaactctctttaaccaaccaaatcacaaaacactcattcca |
407 |
Q |
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| T |
16200658 |
acaaaaatccaaataaaacatctccatagatcttcaaactagatctcttccaatccattgaactctctttaaccaaccaaatcacaaaacactcattcca |
16200757 |
T |
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| Q |
408 |
acctcaataactacttgagttcagagcagaacaatgatgcaaaatgcccctgattttttgtttctnnnnnnnnnnnnngtaaacaatagttagaattttt |
507 |
Q |
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| T |
16200758 |
acctcaataactacttgagttcagagcagaacaatgatgcaaaatgcccctgattttttgtttct-aaaaataaaaaagtaaacaatagttagaattttt |
16200856 |
T |
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| Q |
508 |
tgagctaagctcatat |
523 |
Q |
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| T |
16200857 |
tgagctaagctcatat |
16200872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 2e-80
Query Start/End: Original strand, 588 - 748
Target Start/End: Original strand, 16200937 - 16201097
Alignment:
| Q |
588 |
tgttgcattgcatcgaaaacaagaagagtttataagtataataacaacaagaggaagtaaaaaagcactaacctttgtaaaagaagaagaacaagagaat |
687 |
Q |
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| T |
16200937 |
tgttgcattgcatccaaaacaagaagagtttataagtataataacaacaagaggaagtaaaaaagcactaacctttgtaaaagaagaagaacaagagaat |
16201036 |
T |
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| Q |
688 |
aaggtaaaaggaacaaagttgcaaatttgttatgttaaggtacaattataaacaaaggttg |
748 |
Q |
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| T |
16201037 |
aaggtaaaaggaacaaagttgcaaatttgttatgttaaggtacaataataaacaaaggttg |
16201097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 802 - 982
Target Start/End: Original strand, 16201150 - 16201332
Alignment:
| Q |
802 |
aagtcaagagtcaagacaaaaacattaggataatagtagcagccacgctgtaaagtatattttt-ctgtgctaattaatgttgatattatctctacaatg |
900 |
Q |
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| T |
16201150 |
aagtcaagagtcaagacaaaaacattaggataatagtagcagccacgctgtaaagtatatttttcctgtgctaattaatgttgagattatctctacaatg |
16201249 |
T |
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| Q |
901 |
catatttgacatttttaagttgcgtaagaaagagagtttatgtcccggtga-cgtagct-agttggtaggacaatgcattatta |
982 |
Q |
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| T |
16201250 |
catatttcacatttttaagttgcgtaacaaagagagtttatct-cctgtgaccatagctcagttggtaggacaatgcattatta |
16201332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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