View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4615-Insertion-4 (Length: 970)
Name: NF4615-Insertion-4
Description: NF4615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4615-Insertion-4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 780; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 780; E-Value: 0
Query Start/End: Original strand, 8 - 949
Target Start/End: Original strand, 4355016 - 4355964
Alignment:
| Q |
8 |
tactattcactgttcttccttttctcctcttttttcacccatcaacccactttctgttattc----ctattttcctccttttcttcatccctctcaacaa |
103 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||||| |||| ||||||||||||||||| ||| ||| |||||||||||||||||| || |||||| |
|
|
| T |
4355016 |
tactattcacttttcttcttttcctcctctttttttacccgtcaacccactttctgttcttcttatatatattcctccttttcttcatctttcacaacaa |
4355115 |
T |
|
| Q |
104 |
catcatggaagtccctcgagatattgcttttgagatcttttcatggttaccggcaaagagcgtttgcaagctcgactcaagttgcaactcagtctctgga |
203 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| |
|
|
| T |
4355116 |
caccatggaagtccctcgagatattgcttttgagatattttcatggttaccggcaaagagcgtttgcaagcttaactcaacttgcaactcagtcactgga |
4355215 |
T |
|
| Q |
204 |
tttccaaaagaaacggttttcaaaagaaagcagtctcgcaatttactggggagggatgacacatgcctcttcatccaacccgaacggataatccaaaagt |
303 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4355216 |
ttttcagaagaaacggttttcaaaagaaagcagtctcgcaatttactggggagggatgacacatgcctcttcatccaacccgaacggataatccaaaagt |
4355315 |
T |
|
| Q |
304 |
acgtaaaaagagtcgagttacatcctctacctgaagacagacaatcttctggtgttcctgagaaggttcttagattactatcaaattcaactagtgtctt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4355316 |
acgtaaaaagagtcgagttacatcctctacctgaagacagacaatcttctggtgttcctgagaaggttcttagattactatcaaattcaactagtgtctt |
4355415 |
T |
|
| Q |
404 |
agcttcaggtaatggtttgcttcttcgccaaaccattaatgatcatggtccaattgagtttttcatatttaatccaatcaccaagtgtaggtctttcatt |
503 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4355416 |
agcttcaggtaatggtttacttctttgccaaaccattaatgatcatggtccaattgagtttttcatatttaatccaatcaccaagtgtaggtctttcatt |
4355515 |
T |
|
| Q |
504 |
cctaccccagagtcacttcaaagaaatcatgattttgctaatataaacatcatgttagattgctcttcagatcattacaaagtgtttctttttgaaaacc |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
4355516 |
cctaccccagagtcacttcaaagaaatcatgattttgctaatataaacatcatgttagatttctcttcagatgattacaaggtgtttctttttgaaaacc |
4355615 |
T |
|
| Q |
604 |
caatggaatggtcatcaaaaaattgctatacatgtcgtgtttatcatgaaaaggaaggtgtgtggaaaacaatggataatggtttccttgctggtggaag |
703 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4355616 |
caatggaatggtcatcaataaattgctatacatgtcgtgtttatcatgaaaaggaaggtgtgtggaaaacaatggataatggtttccttgctggtggaag |
4355715 |
T |
|
| Q |
704 |
aaacatgaacttcgacatgaacgtgtttcacaacaaagccattcatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagcca |
803 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4355716 |
aaacatgaacttcgacatgaacgtgtttcacaacaaagccattaatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagcca |
4355815 |
T |
|
| Q |
804 |
tacataatgtcttataatctcgagaatggaaactcaacaatgctgaagttgccaagagaagccattagagg-tggcataccatgactaacatgggcatat |
902 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
4355816 |
tacataatgtcttatcatctcgagaatggaaactcaacaatgctgaggttgccaagagaagccattagaggttgccataccatgactaacatgggcatat |
4355915 |
T |
|
| Q |
903 |
ttaattgggg-aaggtggtcagctcg-aacgatctatttgtttggtgaa |
949 |
Q |
| |
|
|||||||||| |||||| |||||| |||||||||||||||||||||| |
|
|
| T |
4355916 |
ttaattggggtaaggtgtcaagctcgaaacgatctatttgtttggtgaa |
4355964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 777; E-Value: 0
Query Start/End: Original strand, 7 - 949
Target Start/End: Complemental strand, 4675897 - 4674948
Alignment:
| Q |
7 |
atactattcactgttcttccttttctcctcttttttcacccatcaacccactttctgttattc----ctattttcctccttttcttcatccctctcaaca |
102 |
Q |
| |
|
|||||||||||| |||||| ||| |||||||||||| |||| ||||||||||||||||| ||| ||| |||||||||||||||||| || ||||| |
|
|
| T |
4675897 |
atactattcacttttcttcttttcctcctctttttttacccgtcaacccactttctgttcttcttatatatattcctccttttcttcatctttcacaaca |
4675798 |
T |
|
| Q |
103 |
acatcatggaagtccctcgagatattgcttttgagatcttttcatggttaccggcaaagagcgtttgcaagctcgactcaagttgcaactcagtctctgg |
202 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||| |
|
|
| T |
4675797 |
acaccatggaagtccctcgagatattgcttttgagatattttcatggttaccggcaaagagcgtttgcaagcttaactcaacttgcaactcagtcactgg |
4675698 |
T |
|
| Q |
203 |
atttccaaaagaaacggttttcaaaagaaagcagtctcgcaatttactggggagggatgacacatgcctcttcatccaacccgaacggataatccaaaag |
302 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4675697 |
attttcagaagaaacggttttcaaaagaaagcagtctcgcaatttactggggagggatgacacatgcctcttcatccaacccgaacggataatccaaaag |
4675598 |
T |
|
| Q |
303 |
tacgtaaaaagagtcgagttacatcctctacctgaagacagacaatcttctggtgttcctgagaaggttcttagattactatcaaattcaactagtgtct |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4675597 |
tacgtaaaaagagtcgagttacatcctctacctgaagacagacaatcttctggtgttcctgagaaggttcttagattactatcaaattcaactagtgtct |
4675498 |
T |
|
| Q |
403 |
tagcttcaggtaatggtttgcttcttcgccaaaccattaatgatcatggtccaattgagtttttcatatttaatccaatcaccaagtgtaggtctttcat |
502 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4675497 |
tagcttcaggtaatggtttacttctttgccaaaccattaatgatcatggtccaattgagtttttcatatttaatccaatcaccaagtgtaggtctttcat |
4675398 |
T |
|
| Q |
503 |
tcctaccccagagtcacttcaaagaaatcatgattttgctaatataaacatcatgttagattgctcttcagatcattacaaagtgtttctttttgaaaac |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
4675397 |
tcctaccccagagtcacttcaaagaaatcatgattttgctaatataaacatcatgttagatttctcttcagatgattacaaggtgtttctttttgaaaac |
4675298 |
T |
|
| Q |
603 |
ccaatggaatggtcatcaaaaaattgctatacatgtcgtgtttatcatgaaaaggaaggtgtgtggaaaacaatggataatggtttccttgctggtggaa |
702 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4675297 |
ccaatggaatggtcatcaataaattgctatacatgtcgtgtttatcatgaaaaggaaggtgtgtggaaaacaatggataatggtttccttgctggtggaa |
4675198 |
T |
|
| Q |
703 |
gaaacatgaacttcgacatgaacgtgtttcacaacaaagccattcatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagcc |
802 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4675197 |
gaaacatgaacttcgacatgaacttgtttcacaacaaagccatttatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagcc |
4675098 |
T |
|
| Q |
803 |
atacataatgtcttataatctcgagaatggaaactcaacaatgctgaagttgccaagagaagccattagagg-tggcataccatgactaacatgggcata |
901 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
4675097 |
atacataatgtcttatcatctcgagaatggaaactcaacaatgctgaggttgccaagagaagccattagaggttgccataccatgactaacatgggcata |
4674998 |
T |
|
| Q |
902 |
tttaattgggg-aaggtggtcagctcg-aacgatctatttgtttggtgaa |
949 |
Q |
| |
|
||||||||||| |||||| |||||| |||||||||||||||||||||| |
|
|
| T |
4674997 |
tttaattggggtaaggtgtcaagctcgaaacgatctatttgtttggtgaa |
4674948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 1e-80; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 108 - 865
Target Start/End: Original strand, 38248707 - 38249461
Alignment:
| Q |
108 |
atggaagtccctcgagatattgcttttgagatcttttcatggttaccggcaaagagcgtttgcaagctcgactcaagttgcaactcagtctctggatttc |
207 |
Q |
| |
|
|||||||| ||| ||| |||||| ||||||| ||||| ||| |||| | ||| ||| ||||||||||| | |||| |||||||||| || || |||| |
|
|
| T |
38248707 |
atggaagtgtctcaagacattgctgttgagatattttcttggctacccggaaaaagcatttgcaagctcaaatcaacttgcaactcatgctttgaatttt |
38248806 |
T |
|
| Q |
208 |
caaaagaaacggttttcaaaagaaagcagtctcgcaatttactggggagggatgacacatgcctcttcatccaacccgaacggataatccaaaagtacgt |
307 |
Q |
| |
|
| ||||| | ||||| |||| ||||||| |||| ||| | | |||| |||||| ||||| ||||||| |||||||| | |||| ||||| |||| |
|
|
| T |
38248807 |
cggaagaagctgtttttaaaacaaagcaggctcgtaatctgttcgggaaggatgatacatgtttcttcattcaacccgatcaaataagccaaaggtacac |
38248906 |
T |
|
| Q |
308 |
aaaaagagtcgagttacatcctctacctgaagacagacaatcttctggtgttcctgagaaggttcttagattactatcaaattcaactagtgtcttagct |
407 |
Q |
| |
|
||||||||| |||| ||| || |||||||| || |||||||||| |||| ||| | || | | | || || ||||||||||||| | ||||||||||| |
|
|
| T |
38248907 |
aaaaagagtacagttgcattctttacctgaaaaccgacaatcttcgggtgcccctaacaaagctttgagttttctatcaaattcaatttgtgtcttagct |
38249006 |
T |
|
| Q |
408 |
tcaggtaatggtttgcttcttcgccaaaccattaatgatcatggtccaattgagtttttcatatttaatccaatcaccaagtgtaggtctttcattccta |
507 |
Q |
| |
|
|| |||||||| | || || | || |||||||||||||||| ||||||||||||||||| | |||||| |||| |||| | |||||| |||||||| |
|
|
| T |
38249007 |
tctagtaatggtctagttgttggtcacaccattaatgatcatgacccaattgagtttttcatctgcaatccagtcacaaagtcttggtcttccattccta |
38249106 |
T |
|
| Q |
508 |
ccccagagtcacttcaaagaaatcatgattttgctaatataaacatcatgttagattgctcttcagatcattacaaagtgtttctttttgaaaacccaat |
607 |
Q |
| |
|
|||| ||||||||||||||||| ||| || || || ||||||| || ||||||||||||||| |||| | ||||| ||||||||||||||||| ||| |
|
|
| T |
38249107 |
cccccgagtcacttcaaagaaaccatagttctggtagtataaacctcgtgttagattgctctttagatgactacaagttgtttctttttgaaaacacaag |
38249206 |
T |
|
| Q |
608 |
ggaatggtcatcaaaaaattgctatacatgtcgtgtttatcatgaaaaggaaggtgtgtggaaaacaatggataatgg-tttccttgctggtggaagaaa |
706 |
Q |
| |
|
||||||||| | || ||| ||||||||| ||||||| ||| |||||||||||||||| ||||||||| | ||| ||| | || |||||| |||| |
|
|
| T |
38249207 |
tgaatggtcacc---aacttgttatacatgtagtgtttaccatagcaaggaaggtgtgtggacaacaatggaaagtggtttttcatg-tggtggtcgaaa |
38249302 |
T |
|
| Q |
707 |
catgaacttcgacatgaacgtgtttcacaacaaagccattcatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagccatac |
806 |
Q |
| |
|
|||||| || |||||| ||||||||||| || | ||||| ||||||||||| | || ||| ||||||||| |||| || ||||| |||||||| |
|
|
| T |
38249303 |
catgaaatttgacatgcctgtgtttcacaaaggaggccttcattttatctcagatagcgatccttactttgcaaaatctagtccattttataagccatat |
38249402 |
T |
|
| Q |
807 |
ataatgtcttataatctcgagaatggaaactcaacaatgctgaagttgccaagagaagc |
865 |
Q |
| |
|
||||||||||||||| | ||||| |||| |||||| ||||| ||||||||||| ||||| |
|
|
| T |
38249403 |
ataatgtcttataatatagagaacggaatctcaactatgcttaagttgccaagggaagc |
38249461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 437 - 602
Target Start/End: Original strand, 38254153 - 38254318
Alignment:
| Q |
437 |
cattaatgatcatggtccaattgagtttttcatatttaatccaatcaccaagtgtaggtctttca-ttcctaccccagagtcacttcaaagaaatcatga |
535 |
Q |
| |
|
|||||||||||||| ||| ||||||||| | |||| ||||||| | || |||| ||||||||| ||||||| || |||||| |||||||||| ||| |
|
|
| T |
38254153 |
cattaatgatcatgatccgattgagtttgtaatatgtaatccagttactaagtcctggtctttcacttcctactcctgagtcatttcaaagaaaccatag |
38254252 |
T |
|
| Q |
536 |
ttttgctaatataaacatcatgttagattgctcttcagatcattacaaagtgtttctttttgaaaac |
602 |
Q |
| |
|
||||| | ||||||| |||| |||| |||||||| |||| | ||||| ||||||||||| |||||| |
|
|
| T |
38254253 |
ttttgttggtataaacctcatattag-ttgctctttagatgactacaaggtgtttcttttggaaaac |
38254318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 745 - 834
Target Start/End: Original strand, 38254458 - 38254547
Alignment:
| Q |
745 |
ttcatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaa |
834 |
Q |
| |
|
||||| ||||||||||||| || ||| |||||| | |||| |||||||| |||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
38254458 |
ttcattttatctcagattgcgcttcttacattgcaagatctagtcctttttataagccatatataatgtcttataatctagagaatggaa |
38254547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 38237383 - 38237453
Alignment:
| Q |
124 |
atattgcttttgagatcttttcatggttaccggcaaagagcgtttgcaagctcgactcaagttgcaactca |
194 |
Q |
| |
|
|||||||||||||||| ||||| ||| ||||| |||| ||| ||||||||||| | |||| |||||||||| |
|
|
| T |
38237383 |
atattgcttttgagatattttcttggctaccgacaaaaagcatttgcaagctcaaatcaacttgcaactca |
38237453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 38253852 - 38253918
Alignment:
| Q |
124 |
atattgcttttgagatcttttcatggttaccggcaaagagcgtttgcaagctcgactcaagttgcaa |
190 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||||||| || ||||||||||| | |||| |||||| |
|
|
| T |
38253852 |
atattgcttttgagatattttcttggctaccggcaaaaggcatttgcaagctcaaatcaacttgcaa |
38253918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 3e-23; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 745 - 865
Target Start/End: Original strand, 20656984 - 20657104
Alignment:
| Q |
745 |
ttcatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaaactcaacaat |
844 |
Q |
| |
|
||||| ||||||||||||| || ||| ||||||||| |||| |||||||| |||||||| ||||||||||||||||| |||||||||| |||||| || |
|
|
| T |
20656984 |
ttcattttatctcagattgcacttcttactttgcaaaatctaggcctttttataagccatatataatgtcttataatctagagaatggaatctcaactat |
20657083 |
T |
|
| Q |
845 |
gctgaagttgccaagagaagc |
865 |
Q |
| |
|
||| | ||||||||| ||||| |
|
|
| T |
20657084 |
gcttaggttgccaagggaagc |
20657104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 745 - 865
Target Start/End: Original strand, 12036669 - 12036789
Alignment:
| Q |
745 |
ttcatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaaactcaacaat |
844 |
Q |
| |
|
||||| |||||||||||||| | ||| ||||||||| |||| |||||||| |||||||| | ||||||||||||||| |||||||||| |||||| || |
|
|
| T |
12036669 |
ttcattttatctcagattgtgattcttactttgcaaaatctagtcctttttataagccatatacaatgtcttataatctagagaatggaatctcaaccat |
12036768 |
T |
|
| Q |
845 |
gctgaagttgccaagagaagc |
865 |
Q |
| |
|
||| |||||| |||| ||||| |
|
|
| T |
12036769 |
gcttaagttgtcaagggaagc |
12036789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 502 - 602
Target Start/End: Complemental strand, 20656362 - 20656262
Alignment:
| Q |
502 |
ttcctaccccagagtcacttcaaagaaatcatgattttgctaatataaacatcatgttagattgctcttcagatcattacaaagtgtttctttttgaaaa |
601 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| ||||||| |||||||| ||||||||||||||| || |||| | ||||| ||||||||||| ||||| |
|
|
| T |
20656362 |
ttcctacccctgagtcatttcaaagaaatcatagttttgctgatataaacctcatgttagattgctatttagatgactacaaggtgtttcttttggaaaa |
20656263 |
T |
|
| Q |
602 |
c |
602 |
Q |
| |
|
| |
|
|
| T |
20656262 |
c |
20656262 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 745 - 864
Target Start/End: Complemental strand, 12036055 - 12035936
Alignment:
| Q |
745 |
ttcatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaaactcaacaat |
844 |
Q |
| |
|
||||| ||||||||||||| | ||| ||||||||| |||| |||||||| |||| ||| ||||||||||||||||| ||||||| || |||||| || |
|
|
| T |
12036055 |
ttcattttatctcagattgcgcctcttactttgcaaaatctagtcctttttataagctatatataatgtcttataatctagagaatgaaatctcaactat |
12035956 |
T |
|
| Q |
845 |
gctgaagttgccaagagaag |
864 |
Q |
| |
|
||| | ||||||||| |||| |
|
|
| T |
12035955 |
gcttaggttgccaagggaag |
12035936 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 774 - 864
Target Start/End: Complemental strand, 20656105 - 20656014
Alignment:
| Q |
774 |
tttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatg-gaaactcaacaatgctgaagttgccaagagaag |
864 |
Q |
| |
|
||||||||| |||| |||||||| |||||||| |||||||||||||||| ||||||| ||| |||||| ||||| ||||||||||| |||| |
|
|
| T |
20656105 |
tttgcaaaatctagtcctttttataagccatatgtaatgtcttataatctagagaatgagaatctcaactatgcttaagttgccaagggaag |
20656014 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 502 - 602
Target Start/End: Complemental strand, 12036293 - 12036193
Alignment:
| Q |
502 |
ttcctaccccagagtcacttcaaagaaatcatgattttgctaatataaacatcatgttagattgctcttcagatcattacaaagtgtttctttttgaaaa |
601 |
Q |
| |
|
|||||||||| |||||| |||||||||| ||| ||||||| |||||||| ||||||||||||||||| |||| | | ||| |||||||| || ||||| |
|
|
| T |
12036293 |
ttcctaccccggagtcatttcaaagaaaccatagttttgctgatataaacctcatgttagattgctctatagatgactgcaaggtgtttctgttggaaaa |
12036194 |
T |
|
| Q |
602 |
c |
602 |
Q |
| |
|
| |
|
|
| T |
12036193 |
c |
12036193 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 536 - 590
Target Start/End: Original strand, 12036463 - 12036517
Alignment:
| Q |
536 |
ttttgctaatataaacatcatgttagattgctcttcagatcattacaaagtgttt |
590 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| |||| ||||||| |||||| |
|
|
| T |
12036463 |
ttttgcttatataaacctcatgttagattgctctttagatgattacaaggtgttt |
12036517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 602
Target Start/End: Original strand, 20656623 - 20656843
Alignment:
| Q |
381 |
ctatcaaattcaactagtgtcttagcttcaggtaatggtttgcttcttcgccaaaccattaatgatcatggtccaattgagtttttcatatttaatccaa |
480 |
Q |
| |
|
|||||||||||| | ||||||||||||| |||||||| | || || | || |||||||||||||||| | ||||||||| | || ||||||| |
|
|
| T |
20656623 |
ctatcaaattcagtttgtgtcttagcttctagtaatggtctagttgttggtcacaccattaatgatcatgatttgattgagtttggaaaatgtaatccag |
20656722 |
T |
|
| Q |
481 |
tcaccaagtgtaggtctttcattcctaccccagagtcacttcaaagaaatcatgattttgctaatataaacatcatgttagattgctcttcagatcatta |
580 |
Q |
| |
|
| || |||| | |||||| |||| |||| ||||| |||||||||| ||| ||||||| |||||||| |||| ||||||||||||| |||| | || |
|
|
| T |
20656723 |
ttacaaagtcttggtcttcacttcccacccgttagtcatttcaaagaaaccatagttttgctgatataaacctcattttagattgctctttagatgacta |
20656822 |
T |
|
| Q |
581 |
caaagtgtttctttttgaaaac |
602 |
Q |
| |
|
||| |||||| |||||||||| |
|
|
| T |
20656823 |
caagatgtttc-ttttgaaaac |
20656843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 745 - 865
Target Start/End: Original strand, 22177405 - 22177525
Alignment:
| Q |
745 |
ttcatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaaactcaacaat |
844 |
Q |
| |
|
||||| ||||||||||||| || ||| ||||||||| | || |||||||| |||||||| ||||||||||||||||| |||||||||| ||||| || |
|
|
| T |
22177405 |
ttcattttatctcagattgcgcttcttactttgcaaaatccagtcctttttataagccatatataatgtcttataatctagagaatggaatttcaaccat |
22177504 |
T |
|
| Q |
845 |
gctgaagttgccaagagaagc |
865 |
Q |
| |
|
| | ||||||||||| ||||| |
|
|
| T |
22177505 |
gtttaagttgccaagggaagc |
22177525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 502 - 602
Target Start/End: Original strand, 22177165 - 22177265
Alignment:
| Q |
502 |
ttcctaccccagagtcacttcaaagaaatcatgattttgctaatataaacatcatgttagattgctcttcagatcattacaaagtgtttctttttgaaaa |
601 |
Q |
| |
|
||||||| || |||||| |||||||||||||| ||||||| ||||||| |||||||||||||||||| |||| | | ||| ||||||||||| ||||| |
|
|
| T |
22177165 |
ttcctactcctgagtcatttcaaagaaatcatagttttgctggtataaacctcatgttagattgctctttagatgacttcaacgtgtttcttttggaaaa |
22177264 |
T |
|
| Q |
602 |
c |
602 |
Q |
| |
|
| |
|
|
| T |
22177265 |
c |
22177265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 745 - 834
Target Start/End: Original strand, 22169130 - 22169219
Alignment:
| Q |
745 |
ttcatgttatctcagattgttctcattattttgcaaaacctagccctttttacaagccatacataatgtcttataatctcgagaatggaa |
834 |
Q |
| |
|
||||| ||||||||||||| || ||| | ||||||| | || |||||||| |||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
22169130 |
ttcattttatctcagattgcgcttcttactatgcaaaatccagtcctttttataagccatatataatgtcttataatctagagaatggaa |
22169219 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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