View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4615-Insertion-5 (Length: 686)
Name: NF4615-Insertion-5
Description: NF4615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4615-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 8 - 371
Target Start/End: Complemental strand, 30472676 - 30472306
Alignment:
| Q |
8 |
caatgtttgccatactactcgaaagaacaaacgacctaccacgccttcacccatcaccaatcatggtgaagaggttgcacatattcctccggttacaaga |
107 |
Q |
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| T |
30472676 |
caatgtttgccatactactcgaaagaacaaacaacctaccacgccttcacccatcaccaatcatggtgaagaggttgcacatattcctccggttacaaga |
30472577 |
T |
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| Q |
108 |
actggtgaaattcttaataatctggtccaacttatgcataactagaaccatattattcaaaagcaaaacccgtgccttcaatgatttgaaagacaacaat |
207 |
Q |
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| T |
30472576 |
acaggtgaaattcttagtaatctggtccaacttatgcataactataaacatattattcaagagcaaaactcgtgccttcaacgatttaaaagacaacaat |
30472477 |
T |
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| Q |
208 |
attcaccagaataacaaaatactcttgtgtacctcgt--tatgaacaacatttcttcacaacatccttctagaa-tgaca---aggcac-tgtaattttt |
300 |
Q |
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| T |
30472476 |
attcactagaataacaaaatactctcgtatacctcgttgtatgaacgacatttcttcacatcatccttcttgaattcacatatattcacttataattttt |
30472377 |
T |
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| Q |
301 |
atgaggataaatatgaagtacatactccattttgtttcgaacaataaacaaaactagcaaacctcatattt |
371 |
Q |
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| T |
30472376 |
atgaggataaatacgaagtacatactccattttgtttcgaacaataaacaaaactagcaaacctcatattt |
30472306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 376 - 657
Target Start/End: Complemental strand, 30471862 - 30471579
Alignment:
| Q |
376 |
ttgtagcatatcaaatgttactctcatattttaacatctacggtacggttacgagatatatctttnnnnnnnnn--ttatgagatatatatcttttattt |
473 |
Q |
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| T |
30471862 |
ttgtagcatatcaaatgttactctcatattttaacatctacggtacggttacgagatatatctttaaaaaaaataattatgagatatatatcttttattt |
30471763 |
T |
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| Q |
474 |
tgttaactaaattaannnnnnnnnnnnnnnaccaaactcaataaatcaatttgtttactgttaaattaatcaaattgataaacatgattattgattaatt |
573 |
Q |
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| T |
30471762 |
cgttaactaaattaatttttagttttttttaccaaactcaataaatcaatttgtttactgttaaattaatcaaattgataaacatgtttattgattaatt |
30471663 |
T |
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| Q |
574 |
aatcaatttaatttgaagtgggccctataaatatagccaagtcagcatcaaagagcaagcatgcctatgtggcattctccttac |
657 |
Q |
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| T |
30471662 |
aatcaatttaatttgaagtgggccctataaatatagccaagtcagtatcaaatagcaagcatgcctatgtggcattctccttac |
30471579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 527 - 652
Target Start/End: Complemental strand, 30473771 - 30473644
Alignment:
| Q |
527 |
tttactgttaaattaatcaaattgataaacatgatt-attgattaattaatcaatttaatttgaagtgggccctataaa-tatagccaagtcagcatcaa |
624 |
Q |
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| T |
30473771 |
tttactgttgaattaatcaaattgataaacatgatttattgatgagttaatcaatttaattttaagcgggccctataaactatagccaagttagcatcaa |
30473672 |
T |
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| Q |
625 |
agagcaagcatgcctatgtggcattctc |
652 |
Q |
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| T |
30473671 |
atagcaagcatgcctatgtggcattctc |
30473644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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