View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4615-Insertion-7 (Length: 448)
Name: NF4615-Insertion-7
Description: NF4615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4615-Insertion-7 |
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Alignment Details
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 167 - 279
Target Start/End: Original strand, 42028065 - 42028177
Alignment:
| Q |
167 |
gctgtcatatgccaagaaaatggcttagttcctatagtcgagcccgaaatcctcgtagatggatctcatgacatcaacaagtgtgccgaggtgactgaac |
266 |
Q |
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| T |
42028065 |
gctgtcatatgccaagagaatggcctagttcctatagtggagcccgaaatcctagtggatggatctcatgacatcaacaagtgtgctgaggtgactgaac |
42028164 |
T |
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| Q |
267 |
gtgttctagctgc |
279 |
Q |
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| T |
42028165 |
gtgttctggctgc |
42028177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 42027981 - 42028070
Alignment:
| Q |
8 |
gaaaccaccacccaaggtttggatggcctcggtcagtgttgccaaaagtactatgaagctggcgcccgattcgcgaagtggcgtgctgtc |
97 |
Q |
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| T |
42027981 |
gaaaccaccactcaaggtttggacgggcttggtcagcgttgccagaagtactatgaagctggtgcccgatttgccaagtggcgtgctgtc |
42028070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 53 - 447
Target Start/End: Complemental strand, 29237595 - 29237201
Alignment:
| Q |
53 |
aagtactatgaagctggcgcccgattcgcgaagtggcgtgctgtcctcaagattggtcccaacgagccatctgagctggctatccacgagaacgcctatg |
152 |
Q |
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| T |
29237595 |
aagtactatgaagctggtgcacgtttcgctaaatggcgtgcagtgcttaaaatcggccccaatgagccatctgagcactctatccacgagaatgcctatg |
29237496 |
T |
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| Q |
153 |
gtctagctcgctacgctgtcatatgccaagaaaatggcttagttcctatagtcgagcccgaaatcctcgtagatggatctcatgacatcaacaagtgtgc |
252 |
Q |
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| T |
29237495 |
gtttggcccgatatgcagtcatatgccaagagaatggacttgtaccaattgttgagcctgagatccttgttgatggacctcatgacattcaaaagtgtgc |
29237396 |
T |
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| Q |
253 |
cgaggtgactgaacgtgttctagctgcatgctacaaagctttaaacgatcatcatgttctgctggaaggcacccttttgaagcctaacatggtcacccct |
352 |
Q |
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| T |
29237395 |
tgctgttaccgagaaggtccttgcagcatgctacaaggccttgaatgaccaccatgtcctccttgaaggcactctcttgaagcctaacatggttacccct |
29237296 |
T |
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| Q |
353 |
ggttcagattctccaaaggtttcccccgaagttatagctgagtataccgttaaagctttgcagcgaaccgttccggctgccgttcctgctgttgt |
447 |
Q |
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| T |
29237295 |
ggatctgatgcaccaaaggttgcacccgaggttgttgctgagcacaccgttagagctttgcagagaaccgtacctgctgcagtcccagctgttgt |
29237201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 53 - 447
Target Start/End: Complemental strand, 29233845 - 29233451
Alignment:
| Q |
53 |
aagtactatgaagctggcgcccgattcgcgaagtggcgtgctgtcctcaagattggtcccaacgagccatctgagctggctatccacgagaacgcctatg |
152 |
Q |
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| T |
29233845 |
aagtactatgaagctggtgcacgtttcgctaaatggcgtgcagtgcttaaaatcggccccaatgagccatctgagcactctatccacgagaatgcctatg |
29233746 |
T |
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| Q |
153 |
gtctagctcgctacgctgtcatatgccaagaaaatggcttagttcctatagtcgagcccgaaatcctcgtagatggatctcatgacatcaacaagtgtgc |
252 |
Q |
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| T |
29233745 |
gtttggcccgatatgcagtcatatgccaagagaatggacttgtaccaattgttgagcctgagatccttgttgatggacctcatgacattcaaaagtgtgc |
29233646 |
T |
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| Q |
253 |
cgaggtgactgaacgtgttctagctgcatgctacaaagctttaaacgatcatcatgttctgctggaaggcacccttttgaagcctaacatggtcacccct |
352 |
Q |
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| T |
29233645 |
tgctgttaccgagaaggtccttgcagcatgctacaaggcctagaatgaccaccatgtcctccttgaaggcactctcttgaagcctaacatggttacccct |
29233546 |
T |
|
| Q |
353 |
ggttcagattctccaaaggtttcccccgaagttatagctgagtataccgttaaagctttgcagcgaaccgttccggctgccgttcctgctgttgt |
447 |
Q |
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| T |
29233545 |
ggatctgatgcaccaaaggttgcacccgaggttgttgctgagcacaccgttagagctttgcagagaaccgtacctgctgcagtcccagctgttgt |
29233451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 42280349 - 42280404
Alignment:
| Q |
83 |
aagtggcgtgctgtcctcaagattggtcccaacgagccatctgagctggctatcca |
138 |
Q |
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| T |
42280349 |
aagtggcgtgcggtcctcaagattggtcccaatgagccctctgagttgtctatcca |
42280404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 7 - 366
Target Start/End: Complemental strand, 26630059 - 26629700
Alignment:
| Q |
7 |
agaaaccaccacccaaggtttggatggcctcggtcagtgttgccaaaagtactatgaagctggcgcccgattcgcgaagtggcgtgctgtcctcaagatt |
106 |
Q |
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| T |
26630059 |
agaaaccacaactcaaggtttggatgaccttggtcagaggtgcaagaaatactatgaagctggtgcaaggtttgctaaatggcgcgccgtgctaaagatc |
26629960 |
T |
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| Q |
107 |
ggtcccaacgagccatctgagctggctatccacgagaacgcctatggtctagctcgctacgctgtcatatgccaagaaaatggcttagttcctatagtcg |
206 |
Q |
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| T |
26629959 |
ggtccaaatgaaccatctcccttgtcaatccacgaaaacgcctatggtttagctcgttacgccgtcatatgtcaagagaatggtttggttccaattgtgg |
26629860 |
T |
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| Q |
207 |
agcccgaaatcctcgtagatggatctcatgacatcaacaagtgtgccgaggtgactgaacgtgttctagctgcatgctacaaagctttaaacgatcatca |
306 |
Q |
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| T |
26629859 |
agcctgagattctagtggatggaccccacgacattgcaaagtgcgctgatgtaacagaacgcgttcttgcagcatgttacaaggctctaagtgaccatca |
26629760 |
T |
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| Q |
307 |
tgttctgctggaaggcacccttttgaagcctaacatggtcacccctggttcagattctcc |
366 |
Q |
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|||||| || ||||| || |||||||||||||| ||||| || || || ||||||||||| |
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| T |
26629759 |
tgttcttcttgaaggtactcttttgaagcctaatatggttacaccaggatcagattctcc |
26629700 |
T |
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