View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4615-Insertion-8 (Length: 417)

Name: NF4615-Insertion-8
Description: NF4615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4615-Insertion-8
NF4615-Insertion-8
[»] chr5 (1 HSPs)
chr5 (8-417)||(9162936-9163345)
[»] chr4 (5 HSPs)
chr4 (8-409)||(44721080-44721481)
chr4 (8-177)||(10820738-10820909)
chr4 (188-315)||(10820457-10820582)
chr4 (8-99)||(10820645-10820733)
chr4 (116-159)||(10820589-10820632)
[»] chr7 (2 HSPs)
chr7 (8-409)||(43305506-43305907)
chr7 (31-137)||(46422440-46422546)
[»] chr1 (1 HSPs)
chr1 (17-315)||(25345530-25345826)
[»] chr6 (3 HSPs)
chr6 (28-295)||(9753226-9753493)
chr6 (17-146)||(12866173-12866302)
chr6 (142-245)||(12854258-12854361)
[»] chr3 (1 HSPs)
chr3 (155-295)||(18347962-18348100)
[»] chr2 (2 HSPs)
chr2 (91-209)||(11906177-11906295)
chr2 (91-209)||(30520035-30520153)
[»] chr8 (1 HSPs)
chr8 (140-209)||(13673421-13673490)


Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 8 - 417
Target Start/End: Original strand, 9162936 - 9163345
Alignment:
Q  8 ccaatgataaacaaacacaaactcttcaacaattgaaaaaagaagatgggacaggaaccggtagtactctttccagtgtccattttgatgttgaagcatg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||    
T  9162936 ccaatgataaacaaacacaaactcttcaacaattgaaaaaagaagatgggacaggaactagtagtactctttccagtgtccattttgatgttgaagtatg 9163035  T
Q  108 taggaaagcgttagttaggatgataattgttgatgagttgccttttaagtttcttgagggggaggaattttgctattttatgagtgttgtgcagcctaga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9163036 taggaaagcgttagttaggatgataattgttgatgagttgccttttaagtttcttgagggggaggaattttgctattttatgagtgttgggcagcctaga 9163135  T
Q  208 ttccccattccttctaggatttcagttgctagagattgctgggatattttaaccgaagagaaacataagttaagaagtatgtttaggaaaggggattaga 307  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9163136 ttccccattccttctaggatttcagttgctagagattgctgagatattttaaccgaagagaaacataagttaagaagtatgtttagaaaaggggattaga 9163235  T
Q  308 aagtgttatatggtttgtttcttactttttgtggtactccttatgtaatggtttgttaaggttatgatagtactaactactaaggttgatctttggtctt 407  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9163236 aagtgctatatggtttgtttcttactttttgtggtactccttatgtaatggtttgttaaggttatgatagtactaactagtaaggttgatctttggtctt 9163335  T
Q  408 gtatcagtta 417  Q
    ||||||||||    
T  9163336 gtatcagtta 9163345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 8 - 409
Target Start/End: Complemental strand, 44721481 - 44721080
Alignment:
Q  8 ccaatgataaacaaacacaaactcttcaacaattgaaaaaagaagatgggacaggaaccggtagtactctttccagtgtccattttgatgttgaagcatg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  44721481 ccaatgataaacaaacacaaactcttcaacaattgaaaaaagaagatgagacaggaactggtagtactctttccggtgtccattttgatgttgaagcatg 44721382  T
Q  108 taggaaagcgttagttaggatgataattgttgatgagttgccttttaagtttcttgagggggaggaattttgctattttatgagtgttgtgcagcctaga 207  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  44721381 taggaaagcgttagctaagatgataattgttgatgagttgccttttaagtttcttgagggggaggaatttcgctattttgtgagtgttgtgcagcctaga 44721282  T
Q  208 ttccccattccttctaggatttcagttgctagagattgctgggatattttaaccgaagagaaacataagttaagaagtatgtttaggaaaggggattaga 307  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  44721281 ttccccattccttctaggatttcagttgctatagattgctgggatattttaaccaaagagaaacataagttaagaagtatgtttaggagaggggattaga 44721182  T
Q  308 aagtgttatatggtttgtttcttactttttgtggtactccttatgtaatggtttgttaaggttatgatagtactaactactaaggttgatctttggtctt 407  Q
    ||||| |  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44721181 aagtgctggatggtttgtttcttactttttgtggtactccttatgttatggtttgttaaggttatgatggtactaactactaaggttgatctttggtctt 44721082  T
Q  408 gt 409  Q
    ||    
T  44721081 gt 44721080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 10820909 - 10820738
Alignment:
Q  8 ccaatgataaacaaacacaaactcttcaacaattgaaaaaagaagatgggacaggaaccggtagtactctttccagtgtccattttgatgttgaagcatg 107  Q
    |||||||||||||||||| ||||||||||||||||||||||||   ||| | |||||| ||||||||||||||| |||||||||||||||||||||||||    
T  10820909 ccaatgataaacaaacactaactcttcaacaattgaaaaaaga---tggaaaaggaactggtagtactctttccggtgtccattttgatgttgaagcatg 10820813  T
Q  108 taggaaagcgttag--ttaggatgataattgttgatgagttgccttt---taagtttcttgagggggaggaattt 177  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||   ||||||| | |||||| ||||||||    
T  10820812 taggaaagcgttagctataggatgataattgttgatgagttgcctttaaataagtttatcgaggggaaggaattt 10820738  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 188 - 315
Target Start/End: Complemental strand, 10820582 - 10820457
Alignment:
Q  188 tgagtgttgtgcagcctagattccccattccttctaggatttcagttgctagagattgctgggatattttaaccgaagagaaacataagttaagaagtat 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||   ||||||||| ||||||||||||||||||||| || ||||    
T  10820582 tgagtgttgtgcagcctagattccccattccttctaggatttcagctgctaaagattgtgtggatattttcaccgaagagaaacataagttatgatgtat 10820483  T
Q  288 gtttaggaaaggggattagaaagtgtta 315  Q
    |||||||  ||||||||| | |||||||    
T  10820482 gtttagg--aggggattatagagtgtta 10820457  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 10820645 - 10820733
Alignment:
Q  8 ccaatgataaacaaacacaaactcttcaacaattgaaaaaagaagatgggacaggaaccggtagtactctttccagtgtccattttgatgtt 99  Q
    |||||||||||||||||  ||||||||||||||||||||||||   ||||| |||||| ||||||||||||||| |||||||||||||||||    
T  10820645 ccaatgataaacaaacattaactcttcaacaattgaaaaaaga---tgggaaaggaactggtagtactctttccggtgtccattttgatgtt 10820733  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 10820632 - 10820589
Alignment:
Q  116 cgttagttaggatgataattgttgatgagttgccttttaagttt 159  Q
    |||||| ||||||||||||||||||| |||||||||| ||||||    
T  10820632 cgttagctaggatgataattgttgattagttgcctttaaagttt 10820589  T

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Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 8 - 409
Target Start/End: Original strand, 43305506 - 43305907
Alignment:
Q  8 ccaatgataaacaaacacaaactcttcaacaattgaaaaaagaagatgggacaggaaccggtagtactctttccagtgtccattttgatgttgaagcatg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  43305506 ccaatgataaacaaacacaaactcttcaacaattgaaaaaagaagatgagacaggaactggtagtactctttccggtgtccattttgatgttgaagcatg 43305605  T
Q  108 taggaaagcgttagttaggatgataattgttgatgagttgccttttaagtttcttgagggggaggaattttgctattttatgagtgttgtgcagcctaga 207  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  43305606 taggaaagcgttagctaagatgataattgttgatgagttgccttttaagtttcttgagggggaggaatttcgctattttgtgagtgttgtgcagcctaga 43305705  T
Q  208 ttccccattccttctaggatttcagttgctagagattgctgggatattttaaccgaagagaaacataagttaagaagtatgtttaggaaaggggattaga 307  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  43305706 ttccccattccttctaggatttcagttgctatagattgctgggatattttaaccaaagagaaacataagttaagaagtatgtttaggagaggggattaga 43305805  T
Q  308 aagtgttatatggtttgtttcttactttttgtggtactccttatgtaatggtttgttaaggttatgatagtactaactactaaggttgatctttggtctt 407  Q
    ||||| |  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  43305806 aagtgctggatggtttgtttcttactttttgtggtactccttatgttatggtttgttaaggttatgatggtactaactactaaggttgatctttagtctt 43305905  T
Q  408 gt 409  Q
    ||    
T  43305906 gt 43305907  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 46422546 - 46422440
Alignment:
Q  31 cttcaacaattgaaaaaagaagatgggacaggaaccggtagtactctttccagtgtccattttgatgttgaagcatgtaggaaagcgttagttaggatga 130  Q
    |||||||||||||| ||||||||  ||| | ||||  ||||| || ||||||||||||||||||||||||  |||||||||||| | || ||||| ||||    
T  46422546 cttcaacaattgaacaaagaagacaggaaacgaactcgtagtgctttttccagtgtccattttgatgttggtgcatgtaggaaatcttttgttagcatga 46422447  T
Q  131 taattgt 137  Q
    || ||||    
T  46422446 tatttgt 46422440  T

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Target: chr1 (Bit Score: 168; Significance: 6e-90; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 25345530 - 25345826
Alignment:
Q  17 aacaaacacaaactcttcaacaattgaaaaaagaagatgggacaggaaccggtagtactctttccagtgtccattttgatgttgaagcatgtaggaaagc 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||  ||||| |||||||||||| |   |||||||||||||| ||||||||||||||||||    
T  25345530 aacaaacactaactcttcaacaattgaaaaaagaagatgggaatggaactggtagtactcttgctgctgtccattttgatgctgaagcatgtaggaaagc 25345629  T
Q  117 gttagttaggatgataattgttgatgagttgccttttaagtttcttgagggggaggaattttgctattttatgagtgttgtgcagcctagattccccatt 216  Q
     |||| ||| |||||||||||||||||||| |||||||||||| ||||||||||||   || ||||||| |||||||||||||||||||||||| | |||    
T  25345630 attagctagaatgataattgttgatgagttaccttttaagtttgttgagggggaggggcttcgctatttcatgagtgttgtgcagcctagattctcaatt 25345729  T
Q  217 ccttctaggatttcagttgctagagattgctgggatattttaaccgaagagaaacataagttaagaagtatgtttaggaaaggggattagaaagtgtta 315  Q
    |||| ||||||||||| |||||||||||| ||||||||||| || || |||||||||||||||| |||||| ||||||  ||||||||| |||||||||    
T  25345730 ccttataggatttcagctgctagagattgttgggatattttcactgatgagaaacataagttaaaaagtatttttagg--aggggattacaaagtgtta 25345826  T

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Target: chr6 (Bit Score: 148; Significance: 6e-78; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 28 - 295
Target Start/End: Original strand, 9753226 - 9753493
Alignment:
Q  28 actcttcaacaattgaaaaaagaagatgggacaggaaccggtagtactctttccagtgtccattttgatgttgaagcatgtaggaaagcgttagttagga 127  Q
    |||||||||| |||||||||||||||||||| ||| ||  ||||||||||| ||  || | ||||||||||||  | ||||||||||||||||| |||||    
T  9753226 actcttcaaccattgaaaaaagaagatgggaaagggactagtagtactcttgccgctgacaattttgatgttgccgaatgtaggaaagcgttagctagga 9753325  T
Q  128 tgataattgttgatgagttgccttttaagtttcttgagggggaggaattttgctattttatgagtgttgtgcagcctagattccccattccttctaggat 227  Q
    ||||||||||||||||||| |||||||||||| | ||||||||| ||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  9753326 tgataattgttgatgagttaccttttaagtttgtcgagggggagaaatttcgctatttcatgagtgttgtgcagccgagattcccaattccttctaggat 9753425  T
Q  228 ttcagttgctagagattgctgggatattttaaccgaagagaaacataagttaagaagtatgtttagga 295  Q
    | ||| ||||| |||||| ||||||||||| ||||| |||||||||||  ||||||||||||||||||    
T  9753426 tgcagctgctaaagattgttgggatattttgaccgatgagaaacataaactaagaagtatgtttagga 9753493  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 12866302 - 12866173
Alignment:
Q  17 aacaaacacaaactcttcaacaattgaaaaaagaagatgggacaggaaccggtagtactctttccagtgtccattttgatgttgaagcatgtaggaaagc 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||  ||||| || ||||||||| |   |||||||||||||| |||| ||||||| |||||    
T  12866302 aacaaacactaactcttcaacaattgaaaaaagaagatgggaatggaactggcagtactcttgctgctgtccattttgatgctgaaacatgtagaaaagc 12866203  T
Q  117 gttagttaggatgataattgttgatgagtt 146  Q
     |||| ||| ||||||||||||||||||||    
T  12866202 attagctagaatgataattgttgatgagtt 12866173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 12854361 - 12854258
Alignment:
Q  142 gagttgccttttaagtttcttgagggggaggaattttgctattttatgagtgttgtgcagcctagattccccattccttctaggatttcagttgctagag 241  Q
    ||||| |||||||||||| ||||||||||||  ||| ||||||| |||||||||||||| ||||||||  | ||||||||||||||||||| ||||||||    
T  12854361 gagttaccttttaagtttgttgagggggaggggtttcgctatttcatgagtgttgtgcaacctagattttcaattccttctaggatttcagctgctagag 12854262  T
Q  242 attg 245  Q
    ||||    
T  12854261 attg 12854258  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 155 - 295
Target Start/End: Original strand, 18347962 - 18348100
Alignment:
Q  155 agtttcttgagggggaggaattttgctattttatgagtgttgtgcagcctagattccccattccttctaggatttcagttgctagagattgctgggatat 254  Q
    ||||| |||||||||||| |||| ||||||| |||  ||||||||||||||||||||| ||||||| ||||||||||  |  || |||||| ||||||||    
T  18347962 agtttgttgagggggagggatttcgctatttcatg--tgttgtgcagcctagattcccaattccttttaggatttcatcttatacagattgttgggatat 18348059  T
Q  255 tttaaccgaagagaaacataagttaagaagtatgtttagga 295  Q
    ||| ||  | |||||||||||||||| ||||||| ||||||    
T  18348060 tttcactaatgagaaacataagttaaaaagtatgattagga 18348100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 11906295 - 11906177
Alignment:
Q  91 tttgatgttgaagcatgtaggaaagcgttagttaggatgataattgttgatgagttgccttttaagtttcttgagggggaggaattttgctattttatga 190  Q
    ||||||||||||||||||||  ||||  |   ||||||||| ||| | |||||||||||||| |||||| ||||||| |||| |||| | ||||| ||||    
T  11906295 tttgatgttgaagcatgtagagaagctctttctaggatgattattatagatgagttgcctttcaagtttgttgagggagagggatttcggtatttcatga 11906196  T
Q  191 gtgttgtgcagcctagatt 209  Q
    |||||||||| ||||||||    
T  11906195 gtgttgtgcaacctagatt 11906177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 30520035 - 30520153
Alignment:
Q  91 tttgatgttgaagcatgtaggaaagcgttagttaggatgataattgttgatgagttgccttttaagtttcttgagggggaggaattttgctattttatga 190  Q
    ||||||||||||||||||||  ||||  |   ||||||||| ||| | |||||||||||||| |||||| ||||||| |||| |||| | ||||| ||||    
T  30520035 tttgatgttgaagcatgtagagaagctctttctaggatgattattatagatgagttgcctttcaagtttgttgagggagagggatttcggtatttcatga 30520134  T
Q  191 gtgttgtgcagcctagatt 209  Q
    |||||||||| ||||||||    
T  30520135 gtgttgtgcaacctagatt 30520153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 13673490 - 13673421
Alignment:
Q  140 atgagttgccttttaagtttcttgagggggaggaattttgctattttatgagtgttgtgcagcctagatt 209  Q
    ||||||||||||| |||||| ||||||| |||| |||| | ||||| |||||||||||||| ||||||||    
T  13673490 atgagttgcctttcaagtttgttgagggagagggatttcggtatttcatgagtgttgtgcaacctagatt 13673421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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