View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4615_high_3 (Length: 320)
Name: NF4615_high_3
Description: NF4615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4615_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 141 - 301
Target Start/End: Original strand, 26578826 - 26578986
Alignment:
| Q |
141 |
tgtctatcattccaagtgtgttcggaaccggacgaagaagcaacatcttcgacccattctctctagacttatgggatccattccaaaacttccctaccac |
240 |
Q |
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| T |
26578826 |
tgtctatcattccaagtgtcttcggaaccggacgaagaagcaacatcttcgacccattctctctagacttatgggatccattccaaaacttccctaccac |
26578925 |
T |
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| Q |
241 |
caacgaaacatcatcgttcgctaatgcgcgcattgactggaaggaaacaccggaagcacac |
301 |
Q |
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| T |
26578926 |
caacgaaacatcatcgttcgctaatgcgcgcactgactggaaggaaacaccggaagcacac |
26578986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26578684 - 26578746
Alignment:
| Q |
1 |
gtgaccaaatcactcccatcgccttctatataaagctctcacacacaccc--catttcctcat |
61 |
Q |
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| T |
26578684 |
gtgaccaaatcactcccatcgccctctatataaagctctcacacacacacaccatttcctcat |
26578746 |
T |
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