View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4615_low_1 (Length: 472)
Name: NF4615_low_1
Description: NF4615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4615_low_1 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 472
Target Start/End: Complemental strand, 39803258 - 39802804
Alignment:
| Q |
18 |
tttagagcataacaccgagccaccaaactgggtagcatgatcagaagcataattagagagaatgctataaatactaaaccaatttaaaactagatcccaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39803258 |
tttagagcataacaccgagccaccaaactgggtagcatgatcagaaacataattagagagaatgctataaatactaaaccaatttaaaactagatcccaa |
39803159 |
T |
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| Q |
118 |
atttcaccaaaccaatcacaataagaaaacaaatgatcaacatattcttctgctacatgacctccaatgcatagatgagaaccatcatgtaagattccag |
217 |
Q |
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| T |
39803158 |
atttcaccaaaccaatcacaataagaaaacaaatgatcaacatattcttctgccacatgacctccaatgcatagatgagaaccatcatgtaagattccag |
39803059 |
T |
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| Q |
218 |
gacgtaacaagttatccttaattggaattctattgtgaaaaaatcgtcaagcaaacaccgacattttcaacagagctctcttgtttcacgttatttcctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39803058 |
gacgtaacaagttatccttaattggaattctattgtgaaaaaatcgtcaagcaaacaccgacattttcaacagagctctcttgtttcacgttatttcctt |
39802959 |
T |
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| Q |
318 |
aagagtagggcacctccatcaagatctagttgccaatctcaaacatctctttagttttcctgcaaaaatatattatacaacaacaaacaacactcatcca |
417 |
Q |
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| T |
39802958 |
aagagtagggcacctccatcaagatctagttgccaatctcaaacatctctttagttttcctgcaaaaatatattatacaacaacaaacaacactcatcca |
39802859 |
T |
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| Q |
418 |
acttctcctacttccaagcatggagtctcatacgcctccttcacccatccccttt |
472 |
Q |
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| T |
39802858 |
acttctcctccttccaagcatggagtctcatacgccaccttcacccatcaccttt |
39802804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 472
Target Start/End: Complemental strand, 39811194 - 39810763
Alignment:
| Q |
18 |
tttagagcataacaccgagccaccaaactgggtagcatgatcagaagcataattagagagaatgctataaatactaaaccaatttaaaactagatcccaa |
117 |
Q |
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| T |
39811194 |
tttagagcacaacactgagccaccaaactgggtagcatgatcagaagcataattagagagaatgctataaatgctaaaccaatttaa------------- |
39811108 |
T |
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| Q |
118 |
atttcaccaaaccaatcacaataagaaaacaaatgatcaacatattcttctgctacatgacctccaatgcatagatgagaaccatcatgtaagattccag |
217 |
Q |
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| T |
39811107 |
---------aaccaataacaataagaaaacaaacgatcaacatattcatctaccccataacctccactgcatagacgagaatcatcatgtaagattccat |
39811017 |
T |
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| Q |
218 |
gacgtaacaagttatccttaattggaattctattgtgaaaaaatcgtcaagcaaacaccgacattttcaacagagctctcttgtttcacgttatttcctt |
317 |
Q |
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||| |||||||||||||||| ||||||||||||||| |||||| ||| ||||| ||||||||||||||| ||||||||||||||||||| ||||| | |
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| T |
39811016 |
gacataacaagttatccttagttggaattctattgtaaaaaaaaattcacgcaaa-accgacattttcaacggagctctcttgtttcacgtgatttctgt |
39810918 |
T |
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| Q |
318 |
aagagtagggcacctccatcaagatctagttgccaatctcaaacatctctttagttttcctgcaaaaatatattatacaacaacaaacaacactcatcca |
417 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39810917 |
aagagtagggcacctccatcaggatctagttgccaatctcaaacatctcttcagttttcctgcaaaaatatattatactacaacaaacaacactcatctt |
39810818 |
T |
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| Q |
418 |
acttctcctacttccaagcatggagtctcatacgcctccttcacccatccccttt |
472 |
Q |
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| T |
39810817 |
acttctcctcctcccaagcatggagtctcatacgacacctttacccatcaccttt |
39810763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 441
Target Start/End: Complemental strand, 41348236 - 41348180
Alignment:
| Q |
385 |
atatattatacaacaacaaacaacactcatccaacttctcctacttccaagcatgga |
441 |
Q |
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| T |
41348236 |
atatagtatacaacaactaacaacattcctccaacttctcctccttccaatcatgga |
41348180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 43911910 - 43911865
Alignment:
| Q |
94 |
aaccaatttaaaactagatcccaaatttcaccaaaccaatcacaat |
139 |
Q |
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| T |
43911910 |
aaccaatttaaaattagaacccaaactttaccaaaccaatcacaat |
43911865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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