View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4615_low_4 (Length: 280)
Name: NF4615_low_4
Description: NF4615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4615_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 31608522 - 31608604
Alignment:
| Q |
181 |
aagcataacttctagctaggaacaaacaaataataacaaatttgtgctaatctaatatatatacatcaaaacaactatacactaga |
266 |
Q |
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| T |
31608522 |
aagcataacttctagctaggaacaaac---taataacaaatttgtgctaatctaatatatatacatcaaaacaactatacactaga |
31608604 |
T |
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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 27355723 - 27355643
Alignment:
| Q |
186 |
taacttctagctaggaacaaacaaataataacaaatttgtgctaatctaatatatatacatcaaaacaactatacactaga |
266 |
Q |
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| T |
27355723 |
taacttctagctagtaacaaactaataataacaagcttatgctaatctaaagtatatgcatcattacaactatacactaga |
27355643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 45411437 - 45411517
Alignment:
| Q |
186 |
taacttctagctaggaacaaacaaataataacaaatttgtgctaatctaatatatatacatcaaaacaactatacactaga |
266 |
Q |
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|||||||||||||| ||||||| ||||||||||| || ||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
45411437 |
taacttctagctagtaacaaactaataataacaagcttatgctaatctaaagtatatgcatcattacaactatacactaga |
45411517 |
T |
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