View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4616-Insertion-3 (Length: 1003)

Name: NF4616-Insertion-3
Description: NF4616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4616-Insertion-3
NF4616-Insertion-3
[»] scaffold0316 (4 HSPs)
scaffold0316 (642-905)||(11132-11403)
scaffold0316 (9-143)||(10560-10695)
scaffold0316 (210-382)||(10762-10934)
scaffold0316 (473-591)||(11014-11132)
[»] chr4 (32 HSPs)
chr4 (642-905)||(55440911-55441182)
chr4 (213-451)||(46611589-46611829)
chr4 (210-450)||(53019827-53020068)
chr4 (210-382)||(54349244-54349416)
chr4 (9-143)||(35802263-35802398)
chr4 (9-143)||(54349042-54349177)
chr4 (9-140)||(46611384-46611516)
chr4 (12-143)||(53020135-53020267)
chr4 (9-143)||(39163302-39163437)
chr4 (213-379)||(35802027-35802193)
chr4 (213-382)||(39163062-39163232)
chr4 (215-450)||(4947286-4947517)
chr4 (217-450)||(24777840-24778070)
chr4 (9-143)||(5556112-5556247)
chr4 (777-905)||(54349558-54349686)
chr4 (212-424)||(5555826-5556043)
chr4 (801-905)||(46611965-46612069)
chr4 (798-905)||(12571500-12571607)
chr4 (777-903)||(35801756-35801882)
chr4 (777-904)||(53019586-53019713)
chr4 (801-903)||(5555577-5555679)
chr4 (9-140)||(4947083-4947213)
chr4 (777-906)||(39162791-39162920)
chr4 (473-561)||(55441200-55441288)
chr4 (28-109)||(24777673-24777755)
chr4 (801-907)||(4947656-4947762)
chr4 (804-898)||(24778212-24778306)
chr4 (60-136)||(11087062-11087139)
chr4 (448-541)||(12569091-12569184)
chr4 (64-140)||(55441620-55441696)
chr4 (10-60)||(55441715-55441765)
chr4 (325-382)||(55441368-55441425)
[»] chr8 (21 HSPs)
chr8 (210-531)||(12231229-12231540)
chr8 (9-143)||(12231607-12231742)
chr8 (270-449)||(33327758-33327935)
chr8 (215-450)||(24801568-24801798)
chr8 (28-140)||(24801880-24801993)
chr8 (9-138)||(31518763-31518893)
chr8 (264-389)||(375661-375786)
chr8 (805-905)||(33327513-33327613)
chr8 (799-905)||(12230919-12231025)
chr8 (805-898)||(24800350-24800443)
chr8 (61-140)||(33328071-33328151)
chr8 (215-341)||(31518564-31518691)
chr8 (798-905)||(33545555-33545662)
chr8 (352-424)||(33545828-33545902)
chr8 (827-905)||(31518138-31518216)
chr8 (264-357)||(411220-411313)
chr8 (373-450)||(24800586-24800663)
chr8 (801-894)||(24801337-24801429)
chr8 (798-841)||(375420-375463)
chr8 (82-140)||(33546126-33546187)
chr8 (397-430)||(31518530-31518563)
[»] chr5 (24 HSPs)
chr5 (642-905)||(20506713-20506984)
chr5 (9-143)||(31813648-31813783)
chr5 (797-905)||(21946750-21946858)
chr5 (473-591)||(20506984-20507102)
chr5 (28-140)||(7014135-7014248)
chr5 (798-920)||(31813125-31813247)
chr5 (352-450)||(7014787-7014885)
chr5 (801-898)||(7015053-7015150)
chr5 (909-998)||(476634-476723)
chr5 (210-360)||(7014325-7014471)
chr5 (815-905)||(33270738-33270827)
chr5 (799-888)||(10735342-10735431)
chr5 (308-360)||(19281968-19282020)
chr5 (373-423)||(1494760-1494810)
chr5 (60-136)||(27597178-27597255)
chr5 (264-320)||(1494824-1494880)
chr5 (21-68)||(41636886-41636933)
chr5 (60-117)||(10734750-10734808)
chr5 (64-125)||(20507450-20507512)
chr5 (10-60)||(20507531-20507581)
chr5 (10-60)||(21947551-21947601)
chr5 (325-382)||(21947189-21947246)
chr5 (64-124)||(21947471-21947532)
chr5 (325-382)||(31813410-31813467)
[»] chr1 (27 HSPs)
chr1 (217-449)||(43043346-43043578)
chr1 (9-143)||(46888712-46888847)
chr1 (213-382)||(30786321-30786490)
chr1 (215-450)||(36729621-36729859)
chr1 (9-143)||(30786116-30786251)
chr1 (9-143)||(46886691-46886826)
chr1 (777-905)||(46887205-46887333)
chr1 (215-426)||(26049538-26049748)
chr1 (801-905)||(43043093-43043197)
chr1 (308-450)||(20062858-20063005)
chr1 (777-906)||(46889226-46889355)
chr1 (31-125)||(43043644-43043739)
chr1 (798-904)||(26049269-26049375)
chr1 (821-905)||(36729371-36729455)
chr1 (823-905)||(30786668-30786750)
chr1 (909-993)||(3544736-3544820)
chr1 (798-905)||(26051367-26051474)
chr1 (909-974)||(1248239-1248304)
chr1 (756-840)||(16803018-16803102)
chr1 (308-360)||(20059851-20059903)
chr1 (69-140)||(26049806-26049880)
chr1 (64-125)||(36729952-36730014)
chr1 (10-60)||(36730033-36730083)
chr1 (85-140)||(20059621-20059676)
chr1 (822-905)||(20063191-20063273)
chr1 (64-140)||(20062624-20062701)
chr1 (325-382)||(46887006-46887063)
[»] chr7 (6 HSPs)
chr7 (213-424)||(218650-218861)
chr7 (9-143)||(4588772-4588907)
chr7 (9-143)||(218930-219065)
chr7 (210-382)||(4588533-4588705)
chr7 (798-908)||(4588260-4588370)
chr7 (801-895)||(218402-218496)
[»] chr3 (26 HSPs)
chr3 (213-450)||(49020951-49021184)
chr3 (264-456)||(43543433-43543635)
chr3 (9-143)||(49020746-49020881)
chr3 (304-426)||(25484505-25484627)
chr3 (28-140)||(16467344-16467457)
chr3 (215-450)||(16467539-16467770)
chr3 (9-143)||(43543194-43543320)
chr3 (821-903)||(39944908-39944990)
chr3 (60-137)||(25482960-25483038)
chr3 (906-998)||(31675349-31675441)
chr3 (352-420)||(39944669-39944737)
chr3 (801-882)||(49021419-49021500)
chr3 (906-998)||(31920981-31921073)
chr3 (270-360)||(17767323-17767414)
chr3 (270-360)||(19068643-19068734)
chr3 (801-891)||(43543767-43543857)
chr3 (64-124)||(39944370-39944431)
chr3 (799-907)||(25484818-25484925)
chr3 (798-897)||(49237478-49237576)
chr3 (798-840)||(36519008-36519050)
chr3 (799-848)||(17767704-17767753)
chr3 (799-848)||(19069005-19069054)
chr3 (798-841)||(1257699-1257742)
chr3 (215-296)||(25483123-25483205)
chr3 (77-115)||(51837814-51837852)
chr3 (473-522)||(49237703-49237752)
[»] chr2 (24 HSPs)
chr2 (9-143)||(10375303-10375438)
chr2 (9-143)||(10377565-10377700)
chr2 (9-143)||(19258759-19258894)
chr2 (9-143)||(24573770-24573905)
chr2 (266-450)||(27613965-27614152)
chr2 (9-143)||(27613718-27613853)
chr2 (213-360)||(24573975-24574122)
chr2 (213-456)||(10377235-10377495)
chr2 (213-360)||(10375083-10375230)
chr2 (215-450)||(22615564-22615795)
chr2 (28-140)||(22615877-22615990)
chr2 (801-905)||(27614290-27614394)
chr2 (215-450)||(36561737-36561982)
chr2 (352-449)||(24574162-24574259)
chr2 (801-903)||(19259323-19259425)
chr2 (801-905)||(11105471-11105575)
chr2 (373-464)||(10374655-10374746)
chr2 (801-901)||(10377003-10377103)
chr2 (801-907)||(10374454-10374560)
chr2 (210-422)||(19258961-19259164)
chr2 (801-905)||(36558536-36558637)
chr2 (801-905)||(24574397-24574501)
chr2 (10-143)||(36562054-36562203)
chr2 (77-140)||(37509835-37509898)
[»] chr6 (3 HSPs)
chr6 (325-450)||(241097-241222)
chr6 (909-993)||(14843772-14843856)
chr6 (60-140)||(241414-241495)
[»] scaffold0007 (2 HSPs)
scaffold0007 (217-367)||(197972-198122)
scaffold0007 (217-360)||(198566-198709)
[»] scaffold0043 (1 HSPs)
scaffold0043 (909-993)||(34244-34328)


Alignment Details
Target: scaffold0316 (Bit Score: 162; Significance: 6e-86; HSPs: 4)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 642 - 905
Target Start/End: Original strand, 11132 - 11403
Alignment:
Q  642 gaagctcacgttccatctaatagatgaccaagaaattctttatttcactaagtctttctcc-acacaaatcaatcatttgataaactgatggggcttcat 740  Q
    ||||||||||||||| | |||| ||| ||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||||||    
T  11132 gaagctcacgttccaaccaatacatggccaagaaattctttatttcactaagtctttcccccacacaaatcaatcacttgataaattgatggggcttcat 11231  T
Q  741 taatcacatgcatga-------taaatcattttgtcgaaaacacggtgtgtcgaagtcctcattctcttggtcgaaatccatttgcactttgcagcatgt 833  Q
    ||| |||||||||||       ||||||| |||||||||||||||| |||||||||||| ||| |||||||||||||||| |||| ||||||||||||||    
T  11232 taaccacatgcatgaaatatattaaatcactttgtcgaaaacacggcgtgtcgaagtccgcatgctcttggtcgaaatccctttgtactttgcagcatgt 11331  T
Q  834 cgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggtgttaaca 905  Q
    ||||||||||||||| |||| || ||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  11332 cgaaataatccatctgccttgtcaaaaacataatcgtgagttcgaccaaatatttcatttttggtgttaaca 11403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 10560 - 10695
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgct-ccaacatcttgtaataacaagttgtctcat 107  Q
    ||||||||| || |||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10560 atcgttcaagccccgcggtttatgacatcacttcatgcattctttaagaacattaatgtcagaattgcttccaacatcttgtaataacaagttgtctcat 10659  T
Q  108 gacaacatgatagaaaattgctcaagtgagcatgtt 143  Q
    ||||||||||||||||||||||||||||||||||||    
T  10660 gacaacatgatagaaaattgctcaagtgagcatgtt 10695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316; HSP #3
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 210 - 382
Target Start/End: Original strand, 10762 - 10934
Alignment:
Q  210 cattgatattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttt 309  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||  ||  | ||||| |||||| ||||||||||||||||||||| |||  ||||||    
T  10762 cattgatattaaattgtaggaatgtaaagggtggtcggaatctgtcaatctctccactcttgaacctgtttgctcccatggcgtgggtgttacagagttt 10861  T
Q  310 tcagaaatcaagaaaccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactacca 382  Q
    || ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  10862 tctgaaatcaagaaaccaacccattgttattattacaaactgatatatatagactttgtagaaaaaactacca 10934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316; HSP #4
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 473 - 591
Target Start/End: Original strand, 11014 - 11132
Alignment:
Q  473 tttgtcaccgcatgttcgaccttgctttaatattattattaccaccatgttcacgttgaaatactccaagacataataatagattttagacattgaatct 572  Q
    |||||||||||||||||||| |||| |||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||| ||||    
T  11014 tttgtcaccgcatgttcgactttgccttaatattattattgccaccattttcacgttgaaatactccaagtcataataatagaatttagccattggatct 11113  T
Q  573 tgcataaggatggatcttg 591  Q
    || ||||||||||||||||    
T  11114 tgaataaggatggatcttg 11132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 162; Significance: 6e-86; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 642 - 905
Target Start/End: Complemental strand, 55441182 - 55440911
Alignment:
Q  642 gaagctcacgttccatctaatagatgaccaagaaattctttatttcactaagtctttctcc-acacaaatcaatcatttgataaactgatggggcttcat 740  Q
    ||||||||||||||| | |||| ||| ||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||||||    
T  55441182 gaagctcacgttccaaccaatacatggccaagaaattctttatttcactaagtctttcccccacacaaatcaatcacttgataaattgatggggcttcat 55441083  T
Q  741 taatcacatgcatga-------taaatcattttgtcgaaaacacggtgtgtcgaagtcctcattctcttggtcgaaatccatttgcactttgcagcatgt 833  Q
    ||| |||||||||||       ||||||| |||||||||| ||||| |||||||||||| ||| |||||||||||||||| |||| ||||||||||||||    
T  55441082 taaccacatgcatgaaatatattaaatcactttgtcgaaagcacggcgtgtcgaagtccgcatgctcttggtcgaaatccctttgtactttgcagcatgt 55440983  T
Q  834 cgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggtgttaaca 905  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  55440982 cgaaataatccatctgccttgtcgaaaacataatcgtgagttcgaccaaatatttcatttttggtgttaaca 55440911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 213 - 451
Target Start/End: Original strand, 46611589 - 46611829
Alignment:
Q  213 tgatattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttttca 312  Q
    ||||||||||||| |||||| ||||||||||  ||||||||||  ||  | ||||| | |||||||||||||||||||  ||||| |||  |||||||||    
T  46611589 tgatattaaattgtaggaatataaagggtggtcggaatctgtcaatctctccactcctaaacccgtttgctcccatggaatgggtgttacagagttttca 46611688  T
Q  313 gaaatcaagaaaccaacccattgttattattacaaaccgatatatataga--ccttgtagagaaaactaccactaaatcctacagtctatattaaaagta 410  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||| |  ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46611689 gaaatcaagaaaccaaccaattgttattattacaaactgatatatatataggccttgtagagaaaactaccactaaatcctacggtctatattaaaagta 46611788  T
Q  411 aaaataacttcctataacttctaaagacactagaaaataat 451  Q
     ||||||||||||||||||||  |||||||||| |||||||    
T  46611789 gaaataacttcctataacttcctaagacactaggaaataat 46611829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 210 - 450
Target Start/End: Complemental strand, 53020068 - 53019827
Alignment:
Q  210 cattgatattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctccca-tggcgt-gggtattattgagt 307  Q
    |||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||| ||||| | |||||    |||||  |||  || | ||||    
T  53020068 cattgatattaaattgcaggaatgtaaagggtggttggaatctgtcaatccatacactcataaacccatatgctctatgtggcggcgggggttttcgagt 53019969  T
Q  308 tttcagaaatcaagaaaccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactaccactaaatcctacagtctatattaaaa 407  Q
    || ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  53019968 tt-caggaatcaagaaaccaaccccttgttattattacaaactgatatatatagaccttgtagagaaaactatcactaaatcctacggtctatattaaaa 53019870  T
Q  408 gtaaaaataacttcctataacttctaaagacactagaaaataa 450  Q
    ||| ||||||||||||||||||||  |||||||||||||||||    
T  53019869 gtagaaataacttcctataacttcccaagacactagaaaataa 53019827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 210 - 382
Target Start/End: Original strand, 54349244 - 54349416
Alignment:
Q  210 cattgatattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttt 309  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||  ||  | ||||| |||||||||||||||||||||||||||| |||  ||||||    
T  54349244 cattgatattaaattgtaggaatgtaaagggtggtcggaatctgtcaatctctccactcctgaacccgtttgctcccatggcgtgggtgttacagagttt 54349343  T
Q  310 tcagaaatcaagaaaccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactacca 382  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||    
T  54349344 tcagaaatcaagaaaccaacccattgttattattacaaactgatatatatagaccttatagaaaaaactacca 54349416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 35802398 - 35802263
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgct-ccaacatcttgtaataacaagttgtctcat 107  Q
    ||||||||| ||||||||||||||||||||||| |  |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35802398 atcgttcaagcctcgcggtttatgacatcacttcaaacattatttaagaacattaatgtcagaattgcttccaacatcttgtaataacaagttgtctcat 35802299  T
Q  108 gacaacatgatagaaaattgctcaagtgagcatgtt 143  Q
    ||||||||||||||||||||||||||||||||||||    
T  35802298 gacaacatgatagaaaattgctcaagtgagcatgtt 35802263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 54349042 - 54349177
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgct-ccaacatcttgtaataacaagttgtctcat 107  Q
    ||||||||| |||||||||||||||||||||||  | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  54349042 atcgttcaagcctcgcggtttatgacatcacttcctgcattctttaagaacattaatgtcagaattgcttccaacatcttgtaataacaagttgtctcat 54349141  T
Q  108 gacaacatgatagaaaattgctcaagtgagcatgtt 143  Q
    ||||||||||||||||||||| ||||||||||||||    
T  54349142 gacaacatgatagaaaattgcccaagtgagcatgtt 54349177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 46611384 - 46611516
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgct-ccaacatcttgtaataacaagttgtctcat 107  Q
    |||||||||  |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  46611384 atcgttcaagtctcgcggtttatgacatcacttcatgcattctttaagaacattaatgtcagaattgcttccaacatcttgtaataacaagttgtctcgt 46611483  T
Q  108 gacaacatgatagaaaattgctcaagtgagcat 140  Q
    |||||||||||||||||||||||||||||||||    
T  46611484 gacaacatgatagaaaattgctcaagtgagcat 46611516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 53020267 - 53020135
Alignment:
Q  12 gttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgct-ccaacatcttgtaataacaagttgtctcatgac 110  Q
    |||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||    
T  53020267 gttcaagcctcgcggtttatgacatcacttcatgcattctttaagaacattaatgtcataatttcttccaacatcttgtaataacaagttgtctcatgac 53020168  T
Q  111 aacatgatagaaaattgctcaagtgagcatgtt 143  Q
    ||||||||||||||||||||||| |||||||||    
T  53020167 aacatgatagaaaattgctcaagcgagcatgtt 53020135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 39163437 - 39163302
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgc-tccaacatcttgtaataacaagttgtctcat 107  Q
    |||||||||  |||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||| |||| |||| || ||||||||||||    
T  39163437 atcgttcaagtctcgcggtttatgacatcacttcatgcattctttaagaacattaatgtcagaattgcttccaaaatctagtaaaaaaaagttgtctcat 39163338  T
Q  108 gacaacatgatagaaaattgctcaagtgagcatgtt 143  Q
    ||||||||||||||||||||||||||||||||||||    
T  39163337 gacaacatgatagaaaattgctcaagtgagcatgtt 39163302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 213 - 379
Target Start/End: Complemental strand, 35802193 - 35802027
Alignment:
Q  213 tgatattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttttca 312  Q
    ||||||||||||| |||||||||||||||||  ||||||||||  ||  | ||||| || ||||||||||||| ||||||||||| |||  |||||||||    
T  35802193 tgatattaaattgtaggaatgtaaagggtggtcggaatctgtcaatctctccactcctggacccgtttgctcctatggcgtgggtgttacagagttttca 35802094  T
Q  313 gaaatcaagaaaccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaacta 379  Q
    |||||||||||| |||||||||||||| ||||||||| ||||||||||||| ||||||| |||||||    
T  35802093 gaaatcaagaaatcaacccattgttatcattacaaactgatatatatagactttgtagaaaaaacta 35802027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 213 - 382
Target Start/End: Complemental strand, 39163232 - 39163062
Alignment:
Q  213 tgatattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttttca 312  Q
    ||||||||||||| |||||||||||||||||  ||||||| ||  ||  | ||||| || ||||||||||||||||||||||||| |||  ||||||| |    
T  39163232 tgatattaaattgtaggaatgtaaagggtggtcggaatctatcaatctctccactcctggacccgtttgctcccatggcgtgggtgttacagagttttta 39163133  T
Q  313 gaaatcaagaaaccaac-ccattgttattattacaaaccgatatatatagaccttgtagagaaaactacca 382  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  39163132 gaaatcaagaaaccaacaccattgttattattacaaactgatatatatagactttgtagaaaaaactacca 39163062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 215 - 450
Target Start/End: Original strand, 4947286 - 4947517
Alignment:
Q  215 atattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttttcaga 314  Q
    ||||||||||||| ||||||||| ||||| |||||||||||| || || ||||| ||||||| | ||||||   || | |||| |||  |||||| ||||    
T  4947286 atattaaattgcatgaatgtaaaaggtggttggaatctgtcgatctatccactcgtgaacccatatgctccgc-ggagggggtgtta--gagttt-caga 4947381  T
Q  315 aatcaagaaaccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactaccactaaatcctacagtctatattaaaagtaaaaa 414  Q
    ||| ||||||| ||||| ||||| ||||||||||| |||||||| |||||||||||  ||||||||||||||||||||| ||||| ||||||| || |||    
T  4947382 aataaagaaacaaaccccttgttcttattacaaactgatatatacagaccttgtaggaaaaactaccactaaatcctacggtctagattaaaaatagaaa 4947481  T
Q  415 taacttcctataacttctaaagacactagaaaataa 450  Q
    ||||||| |||||||||  |||||| ||||||||||    
T  4947482 taacttcttataacttcctaagacattagaaaataa 4947517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 217 - 450
Target Start/End: Original strand, 24777840 - 24778070
Alignment:
Q  217 attaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttttcagaaa 316  Q
    ||||||||||||||||||||||||||| |||||||| ||  ||||| ||||| |||| || ||||||||  ||| | |||| |||  ||||||  |||||    
T  24777840 attaaattgcaggaatgtaaagggtggttggaatctatcaatccatgcactcgtgaagccatttgctccg-tggtgggggtgtta--gagttta-agaaa 24777935  T
Q  317 tcaagaaa-ccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaac-taccactaaatcctacagtctatattaaaagtaaaaa 414  Q
    |||||||| ||||||| ||||| ||||||||||| |||||| ||||||||||||| |||||| |||||||||||||||| ||||| ||||||| || |||    
T  24777936 tcaagaaaaccaaccccttgttcttattacaaactgatatacatagaccttgtag-gaaaacttaccactaaatcctacggtctagattaaaaatagaaa 24778034  T
Q  415 taacttcctataacttctaaagacactagaaaataa 450  Q
    ||||||| |||||||||  |||||||||||||||||    
T  24778035 taacttcttataacttcctaagacactagaaaataa 24778070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 5556247 - 5556112
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgct-ccaacatcttgtaataacaagttgtctcat 107  Q
    ||||||||| ||||| || |||||||||||||| ||  ||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  5556247 atcgttcaagcctcgtggattatgacatcacttcatggattctttaagaacattaatgttagaatcgcttccaacatcttgtaataacaagttgtctcat 5556148  T
Q  108 gacaacatgatagaaaattgctcaagtgagcatgtt 143  Q
    |||||| |||||||||||||||||||| ||||||||    
T  5556147 gacaacgtgatagaaaattgctcaagtaagcatgtt 5556112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 777 - 905
Target Start/End: Original strand, 54349558 - 54349686
Alignment:
Q  777 cggtgtgtcgaagtcctcattctcttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttc 876  Q
    |||||| ||||||||   || |||||||||||||||  ||||||||||||| ||||||||||||| |||||| |||| ||||||| ||||||||||||||    
T  54349558 cggtgtatcgaagtctgtatactcttggtcgaaatctctttgcactttgcaacatgtcgaaataacccatctgccttgtcgaaaatataatcatgagttc 54349657  T
Q  877 gaccaactatttcatttttggtgttaaca 905  Q
    |||||| ||||||||||||||||||||||    
T  54349658 gaccaaatatttcatttttggtgttaaca 54349686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 212 - 424
Target Start/End: Complemental strand, 5556043 - 5555826
Alignment:
Q  212 ttgatattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctccca-tggcgtgggtattattgagtttt 310  Q
    |||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||| | | |||||    |||||  |    | |||   |||    
T  5556043 ttgatattaaattgcaggaatgtaaagggtggttggaatctgtcaatccatacactcgtgaacacatatgctctgtgtggcggcgagggtgttggagttt 5555944  T
Q  311 cagaaatcaagaaaccaacccattgttattattac----aaaccgatatatatagaccttgtagagaaaactaccactaaatcctacagtctatattaaa 406  Q
    |  ||||||||||||||||| ||||||||||||||    | |   |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  5555943 cgaaaatcaagaaaccaaccaattgttattattacatatatatatatatatatagactttgtagagaaaactaccactaaatcctacagtctatattgaa 5555844  T
Q  407 agtaaaaataacttccta 424  Q
    |||| |||||||||||||    
T  5555843 agtagaaataacttccta 5555826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 801 - 905
Target Start/End: Original strand, 46611965 - 46612069
Alignment:
Q  801 ttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggtgt 900  Q
    ||||||||||||||||||||||||| ||| |||||||||||  ||||| ||||||||||||||||||||| ||||||||||| |||||||||||| ||||    
T  46611965 ttggtcgaaatccatttgcactttgtagcctgtcgaaataactcatctgccttatcgaaaacataatcataagttcgaccaaatatttcatttttagtgt 46612064  T
Q  901 taaca 905  Q
    |||||    
T  46612065 taaca 46612069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 798 - 905
Target Start/End: Original strand, 12571500 - 12571607
Alignment:
Q  798 ctcttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttgg 897  Q
    |||||||||||||||  ||||||||||||||||||||||||||| ||||||||||| ||||||| | |||||||||||||||||| ||||||||||||      
T  12571500 ctcttggtcgaaatcactttgcactttgcagcatgtcgaaataacccatctaccttgtcgaaaatagaatcatgagttcgaccaaatatttcatttttta 12571599  T
Q  898 tgttaaca 905  Q
    ||||||||    
T  12571600 tgttaaca 12571607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 777 - 903
Target Start/End: Complemental strand, 35801882 - 35801756
Alignment:
Q  777 cggtgtgtcgaagtcctcattctcttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttc 876  Q
    |||||| ||||||||   || |||||||||||||||  ||||||||||||| ||||||||||||| ||||||||||| ||||||| |||||| |||||||    
T  35801882 cggtgtatcgaagtctgtatgctcttggtcgaaatctctttgcactttgcaacatgtcgaaataacccatctaccttgtcgaaaatataatcgtgagttc 35801783  T
Q  877 gaccaactatttcatttttggtgttaa 903  Q
    || ||| ||||||||||||||||||||    
T  35801782 gatcaaatatttcatttttggtgttaa 35801756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 777 - 904
Target Start/End: Complemental strand, 53019713 - 53019586
Alignment:
Q  777 cggtgtgtcgaagtcctcattctcttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttc 876  Q
    |||||||||||||||   ||  ||||||||||||||  ||||||||||||| ||||||||||||| |||| | |||| ||||||| | ||||||||||||    
T  53019713 cggtgtgtcgaagtctgtatggtcttggtcgaaatctctttgcactttgcaacatgtcgaaataacccatttgccttgtcgaaaatagaatcatgagttc 53019614  T
Q  877 gaccaactatttcatttttggtgttaac 904  Q
    |||||| |||||||||||||||||||||    
T  53019613 gaccaaatatttcatttttggtgttaac 53019586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 801 - 903
Target Start/End: Complemental strand, 5555679 - 5555577
Alignment:
Q  801 ttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggtgt 900  Q
    |||||| ||||||||||||| ||| ||||||||||||||||  ||||| |||| |||||||||||||||| ||||||||||| |||||||||||||||||    
T  5555679 ttggtcaaaatccatttgcattttacagcatgtcgaaataacacatctgccttgtcgaaaacataatcattagttcgaccaaatatttcatttttggtgt 5555580  T
Q  901 taa 903  Q
    |||    
T  5555579 taa 5555577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 4947083 - 4947213
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgc-tccaacatcttgtaataacaagttgtctcat 107  Q
    |||||||||  |||||||  ||||||||||||| || | ||||||||||||||||| |||| |||||| |||||| |||| ||||||  |||||||||||    
T  4947083 atcgttcaagtctcgcggcctatgacatcacttcatgctttctttaagaacattaaagtcataattgcatccaacgtcttttaataa--agttgtctcat 4947180  T
Q  108 gacaacatgatagaaaattgctcaagtgagcat 140  Q
    ||||||||||||||||| |||||||||||||||    
T  4947181 gacaacatgatagaaaaatgctcaagtgagcat 4947213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 777 - 906
Target Start/End: Complemental strand, 39162920 - 39162791
Alignment:
Q  777 cggtgtgtcgaagtcctcattctcttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttc 876  Q
    |||||| ||||||||   || |||||||||||||||  ||||||||||||| ||||||||||||| | |||| |||| ||||||| ||||||||||||||    
T  39162920 cggtgtatcgaagtctgtatgctcttggtcgaaatctctttgcactttgcaacatgtcgaaataaccaatctgccttgtcgaaaatataatcatgagttc 39162821  T
Q  877 gaccaactatttcatttttggtgttaacac 906  Q
    ||| || |||||||||||||||| ||||||    
T  39162820 gacaaaatatttcatttttggtgctaacac 39162791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 473 - 561
Target Start/End: Complemental strand, 55441288 - 55441200
Alignment:
Q  473 tttgtcaccgcatgttcgaccttgctttaatattattattaccaccatgttcacgttgaaatactccaagacataataatagattttag 561  Q
    |||||||||||||||||||| |||| |||||||||||||| ||||||| |||||||||||||||||| || |||||||||||| |||||    
T  55441288 tttgtcaccgcatgttcgactttgccttaatattattattgccaccattttcacgttgaaatactcctagtcataataatagaatttag 55441200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 24777673 - 24777755
Alignment:
Q  28 ttatgacatcacttaattcattctttaagaacattaatgtcagaattgc-tccaacatcttgtaataacaagttgtctcatga 109  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||    
T  24777673 ttatgacatcacttcatgcattctttaagaacattaatgtcagaattgcatccaacgtcttttaataacaagttgtctcatga 24777755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 801 - 907
Target Start/End: Original strand, 4947656 - 4947762
Alignment:
Q  801 ttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggtgt 900  Q
    ||||||||||| | |||| |||| |||||||||| ||||||  |||||  ||| || |||| ||||| ||||||||||| || |||||||||||||||      
T  4947656 ttggtcgaaattcctttggacttcgcagcatgtcaaaataactcatctgtcttgtcaaaaatataattatgagttcgacaaaatatttcatttttggtac 4947755  T
Q  901 taacact 907  Q
    |||||||    
T  4947756 taacact 4947762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 804 - 898
Target Start/End: Original strand, 24778212 - 24778306
Alignment:
Q  804 gtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggt 898  Q
    |||||||||| ||| |||||||||||||||||||| ||  ||||| | || || |||  |||||||| | ||||||||| |||||||||||||||    
T  24778212 gtcgaaatcccttttcactttgcagcatgtcgaaaaaaatcatctgcgttgtctaaattataatcataatttcgaccaaatatttcatttttggt 24778306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 11087062 - 11087139
Alignment:
Q  60 attaatgtcagaattgc-tccaacatcttgtaataacaagttgtctcatgacaacatgatagaaaattgctcaagtga 136  Q
    |||||||| |||||||  ||||||| ||| |||||||||||| |||||||||||||| |||||||  |||||||||||    
T  11087062 attaatgttagaattggatccaacaacttttaataacaagttttctcatgacaacataatagaaagatgctcaagtga 11087139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 448 - 541
Target Start/End: Original strand, 12569091 - 12569184
Alignment:
Q  448 taatcttcaaagcacttcggtcttatttgtcaccgcatgttcgaccttgctttaatattattattaccaccatgttcacgttgaaatactccaa 541  Q
    |||||||||| |||||||   ||| |||||||||||||||||||| |||| ||| |||| ||| || |||||||| ||||||||| || |||||    
T  12569091 taatcttcaatgcacttcaaccttgtttgtcaccgcatgttcgactttgccttattattgttactagcaccatgtccacgttgaagtattccaa 12569184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 55441696 - 55441620
Alignment:
Q  64 atgtcagaattgc-tccaacatcttgtaataacaagttgtctcatgacaacatgatagaaaattgctcaagtgagcat 140  Q
    |||| |||||||| ||||||||||| |||||| ||||| |||||||| ||||| |||||||||| ||||| |||||||    
T  55441696 atgttagaattgcatccaacatcttttaataataagttttctcatgaaaacataatagaaaatt-ctcaaatgagcat 55441620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 55441765 - 55441715
Alignment:
Q  10 tcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaaca 60  Q
    ||||||||  |||||||||||||| ||||||| || |||||||||||||||    
T  55441765 tcgttcaagtctcgcggtttatgatatcacttcatgcattctttaagaaca 55441715  T

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Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 325 - 382
Target Start/End: Complemental strand, 55441425 - 55441368
Alignment:
Q  325 ccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactacca 382  Q
    ||||||| || || ||||||||||| ||||||||||||| ||| ||| ||||||||||    
T  55441425 ccaaccctttcttcttattacaaactgatatatatagactttgcagaaaaaactacca 55441368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 155; Significance: 9e-82; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 9e-82
Query Start/End: Original strand, 210 - 531
Target Start/End: Complemental strand, 12231540 - 12231229
Alignment:
Q  210 cattgatattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttt 309  Q
    ||||| |||||||||  |||||||||||||||||  ||||||||||  ||  | ||||| |||||||||||||||||||||||||||| |||  ||||||    
T  12231540 cattggtattaaattataggaatgtaaagggtggtcggaatctgtcaatctctccactcctgaacccgtttgctcccatggcgtgggtgttacagagttt 12231441  T
Q  310 tcagaaatcaagaaaccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactaccactaaatcctacagtctatattaaaagt 409  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  12231440 tcaaaaatcaagaaaccaacccattgttattattacaaactgatatatatagaccttgtagagaaaactaacactaaatcctacagtctatattgaaagt 12231341  T
Q  410 aaaaataacttcctataacttctaaagacactagaaaataatcttcaaagcacttcggtcttatttgtcaccgcatgttcgaccttgctttaatattatt 509  Q
    | ||||||||||||          |||||||||| ||||||||||||| ||||||| ||||| ||||||||||||| |||||| |||| ||| |||| ||    
T  12231340 agaaataacttcct----------aagacactaggaaataatcttcaatgcacttcagtcttgtttgtcaccgcatattcgactttgccttattattgtt 12231251  T
Q  510 attaccaccatgttcacgttga 531  Q
    |  |  ||||||| ||||||||    
T  12231250 acaagtaccatgtccacgttga 12231229  T

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Target: chr8; HSP #2
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 12231742 - 12231607
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgct-ccaacatcttgtaataacaagttgtctcat 107  Q
    ||||||||| | |||||||||| |||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12231742 atcgttcaagcttcgcggtttaagacatcacttcatgcattctttaagaacattaatgtcagaattgcttccaacatcttgtaataacaagttgtctcat 12231643  T
Q  108 gacaacatgatagaaaattgctcaagtgagcatgtt 143  Q
    ||||||||||||||||||||||||||||||||||||    
T  12231642 gacaacatgatagaaaattgctcaagtgagcatgtt 12231607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 270 - 449
Target Start/End: Complemental strand, 33327935 - 33327758
Alignment:
Q  270 tgaacccgtttgctcccatggcgtgggtattattgagttttcagaaatcaagaaaccaacccattgttattattacaaaccgatatatatagaccttgta 369  Q
    |||||| ||||||||||||||||||||| |||   ||| ||||||||||||||||||||||||||||||||||||||||| |  ||||||| ||||||||    
T  33327935 tgaacctgtttgctcccatggcgtgggtgttacaaagtcttcagaaatcaagaaaccaacccattgttattattacaaactg--atatataaaccttgta 33327838  T
Q  370 gagaaaactaccactaaatcctacagtctatattaaaagtaaaaataacttcctataacttctaaagacactagaaaata 449  Q
    ||||||||||||||||||| ||||  ||||||||||||||| ||||||||||||||||||||  | |||| |||||||||    
T  33327837 gagaaaactaccactaaatactacgatctatattaaaagtagaaataacttcctataacttcccatgacattagaaaata 33327758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 215 - 450
Target Start/End: Complemental strand, 24801798 - 24801568
Alignment:
Q  215 atattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcc-catggcgtgggtattattgagttttcag 313  Q
    |||||||||| |||||||||||||||||| |||||||||||| || || ||||| ||||||  | |||| | ||  ||| |||| |||  |||||| |||    
T  24801798 atattaaatttcaggaatgtaaagggtggttggaatctgtcgatctatccactcgtgaacctatatgcttcgca--gcgggggtgtta--gagttt-cag 24801704  T
Q  314 aaatcaagaaaccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactaccactaaatcctacagtctatattaaaagtaaaa 413  Q
    |||||||||||| ||||| || || ||||||||||| ||||||||||||||||||||  ||||||||||||||||||||| ||||| ||||||| || ||    
T  24801703 aaatcaagaaac-aacccctttttcttattacaaactgatatatatagaccttgtaggaaaaactaccactaaatcctacggtctagattaaaaatataa 24801605  T
Q  414 ataacttcctataacttctaaagacactagaaaataa 450  Q
    |||||||| |||||||||  |  ||||||||||||||    
T  24801604 ataacttcttataacttcctagaacactagaaaataa 24801568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 24801993 - 24801880
Alignment:
Q  28 ttatgacatcacttaattcattctttaagaacattaatgtcagaattgc-tccaacatcttgtaataacaagttgtctcatgacaacatgatagaaaatt 126  Q
    |||||||||||||| ||  ||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||| |    
T  24801993 ttatgacatcacttcatggattctttaagaacatcaatgtcagaattgcatccaacatcttttaataacaagttgtctaatgacaacatgatagaaaaat 24801894  T
Q  127 gctcaagtgagcat 140  Q
    ||||||||||||||    
T  24801893 gctcaagtgagcat 24801880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 31518893 - 31518763
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgc-tccaacatcttgtaataacaagttgtctcat 107  Q
    |||||||||  ||| ||||||||||||| | || || |||  ||||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||||    
T  31518893 atcgttcaagtctcacggtttatgacataatttcatgcatcttttaagaacattaatgttagaattgcatccaacatcttttaataataagttgtctcat 31518794  T
Q  108 gacaacatgatagaaaattgctcaagtgagc 138  Q
    ||||||||||||||||| |||||||||||||    
T  31518793 gacaacatgatagaaaaatgctcaagtgagc 31518763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 264 - 389
Target Start/End: Complemental strand, 375786 - 375661
Alignment:
Q  264 cactcatgaacccgtttgctcccatggcgtgggtattattgagttttcagaaatcaagaaaccaacccattgttattattacaaaccgatatatatagac 363  Q
    ||||| |||||| |||| |||||||||||||||| |||  ||||||||||||||||||||| ||| || ||||| |||||||||||  ||||||||||||    
T  375786 cactcctgaacctgttttctcccatggcgtgggtgttagagagttttcagaaatcaagaaaacaatcccttgttcttattacaaactcatatatatagac 375687  T
Q  364 cttgtagagaaaactaccactaaatc 389  Q
    |||||||  |||||||||| ||||||    
T  375686 cttgtaggaaaaactaccattaaatc 375661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 805 - 905
Target Start/End: Complemental strand, 33327613 - 33327513
Alignment:
Q  805 tcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggtgttaac 904  Q
    ||||||||| ||||||||||||||||||||||||||| | || |||||| | ||||| | |||||||||||||||||| |||||||||||| ||||||||    
T  33327613 tcgaaatccctttgcactttgcagcatgtcgaaataacctatttaccttgttgaaaatagaatcatgagttcgaccaaatatttcattttttgtgttaac 33327514  T
Q  905 a 905  Q
    |    
T  33327513 a 33327513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 799 - 905
Target Start/End: Complemental strand, 12231025 - 12230919
Alignment:
Q  799 tcttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggt 898  Q
    ||||||||||||||  |||||||||||||||||||||||||||  ||||| |||| ||||||| | ||| |||||||||||||| ||||| |||||| ||    
T  12231025 tcttggtcgaaatctctttgcactttgcagcatgtcgaaataacacatctgccttgtcgaaaatagaattatgagttcgaccaaatattttattttttgt 12230926  T
Q  899 gttaaca 905  Q
    |||||||    
T  12230925 gttaaca 12230919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 805 - 898
Target Start/End: Complemental strand, 24800443 - 24800350
Alignment:
Q  805 tcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggt 898  Q
    ||||||||| ||| ||||||||||||||||||||||| |||| | |||| ||||||| |||||||||||||||||||| ||||| |||| ||||    
T  24800443 tcgaaatccctttacactttgcagcatgtcgaaataacccatttgccttgtcgaaaatataatcatgagttcgaccaaatattttatttgtggt 24800350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 33328151 - 33328071
Alignment:
Q  61 ttaatgtcagaattgc-tccaacatcttgtaataacaagttgtctcatgacaacatgatagaaaattgctcaagtgagcat 140  Q
    |||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| ||||||||  ||||||||||||||    
T  33328151 ttaatgtcagaattgcatccaacatcttttaataacaagttttctcatgacaacataatagaaaaacgctcaagtgagcat 33328071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 341
Target Start/End: Complemental strand, 31518691 - 31518564
Alignment:
Q  215 atattaaattgcagg-aatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttttcag 313  Q
    |||||||||| |||| ||| |||||| ||| |||||||||||  || || ||||| ||||||||||||||| |||||||||| | ||   ||||||| ||    
T  31518691 atattaaatttcagggaatttaaaggttggttggaatctgtcaatctatccactcctgaacccgtttgctctcatggcgtggatgttgcagagttttgag 31518592  T
Q  314 aaatcaagaaaccaacccattgttatta 341  Q
    |||||||||||  |||| ||||||||||    
T  31518591 aaatcaagaaattaaccaattgttatta 31518564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 798 - 905
Target Start/End: Complemental strand, 33545662 - 33545555
Alignment:
Q  798 ctcttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttgg 897  Q
    |||||||||||||||| |||||||||||||||||||||||||||   || |  ||| |||||| | | ||||||| ||||||||| ||| | ||||||||    
T  33545662 ctcttggtcgaaatccctttgcactttgcagcatgtcgaaataacatatatggcttgtcgaaatcttgatcatgatttcgaccaaatatcttatttttgg 33545563  T
Q  898 tgttaaca 905  Q
    | ||||||    
T  33545562 tattaaca 33545555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 352 - 424
Target Start/End: Complemental strand, 33545902 - 33545828
Alignment:
Q  352 atatatatagaccttgtagagaaaa--ctaccactaaatcctacagtctatattaaaagtaaaaataacttccta 424  Q
    ||||||||||| |||||||| ||||  ||||||||||||||||| || ||||||||||||| |||||||||||||    
T  33545902 atatatatagatcttgtagaaaaaaaactaccactaaatcctacggtttatattaaaagtagaaataacttccta 33545828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 827 - 905
Target Start/End: Complemental strand, 31518216 - 31518138
Alignment:
Q  827 agcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggtgttaaca 905  Q
    ||||||||||||||| |||||| |||| ||||||| | |||||| |||||||  || |||||||||||| |||||||||    
T  31518216 agcatgtcgaaataacccatctgccttgtcgaaaatagaatcataagttcgataaaatatttcattttttgtgttaaca 31518138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 264 - 357
Target Start/End: Complemental strand, 411313 - 411220
Alignment:
Q  264 cactcatgaacccgtttgctcccatggcgtgggtattattgagttttcagaaatcaagaaaccaacccattgttattattacaaaccgatatat 357  Q
    ||||||| |||| ||||||||||||||| ||||| |||  ||| |||||||||||||| |  | |||| ||||| ||||||||||| |||||||    
T  411313 cactcattaaccagtttgctcccatggcctgggtgttaccgagatttcagaaatcaaggattccaccctttgttcttattacaaactgatatat 411220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 373 - 450
Target Start/End: Complemental strand, 24800663 - 24800586
Alignment:
Q  373 aaaactaccactaaatcctacagtctatattaaaagtaaaaataacttcctataacttctaaagacactagaaaataa 450  Q
    |||||||||||||||| |||| ||||| ||| ||| || |||||||||| |||||||||  ||||||||| |||||||    
T  24800663 aaaactaccactaaattctacggtctagatttaaaatagaaataacttcttataacttcctaagacactataaaataa 24800586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 801 - 894
Target Start/End: Complemental strand, 24801429 - 24801337
Alignment:
Q  801 ttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttt 894  Q
    ||||| || |||| ||||||||||||  |||||||||||||  ||||| |||||||| ||| ||||||||| ||| |||||| |||||||||||    
T  24801429 ttggttgatatccctttgcactttgcttcatgtcgaaataacacatctgccttatcg-aaatataatcatgggttagaccaaatatttcatttt 24801337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 798 - 841
Target Start/End: Complemental strand, 375463 - 375420
Alignment:
Q  798 ctcttggtcgaaatccatttgcactttgcagcatgtcgaaataa 841  Q
    |||||||||||||||  |||||||||||||||||||||||||||    
T  375463 ctcttggtcgaaatctctttgcactttgcagcatgtcgaaataa 375420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 33546187 - 33546126
Alignment:
Q  82 catcttgtaataacaagttgtctcatgacaacatgatag---aaaattgctcaagtgagcat 140  Q
    |||||| ||||||||||||||||||||||||||| ||||   |||| |||||||||||||||    
T  33546187 catcttttaataacaagttgtctcatgacaacataatagaaaaaaaatgctcaagtgagcat 33546126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 397 - 430
Target Start/End: Complemental strand, 31518563 - 31518530
Alignment:
Q  397 ctatattaaaagtaaaaataacttcctataactt 430  Q
    |||||||||||||| |||||||||||||||||||    
T  31518563 ctatattaaaagtagaaataacttcctataactt 31518530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 154; Significance: 4e-81; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 642 - 905
Target Start/End: Complemental strand, 20506984 - 20506713
Alignment:
Q  642 gaagctcacgttccatctaatagatgaccaagaaattctttatttcactaagtctttc-tccacacaaatcaatcatttgataaactgatggggcttcat 740  Q
    ||||||||||||||| | |||| ||| ||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||| ||||||||||||||    
T  20506984 gaagctcacgttccaaccaatacatggccaagaaattctttatttcactaagtctttccttcacacaaatcagtcacttgataaattgatggggcttcat 20506885  T
Q  741 taatcacatgcatga-------taaatcattttgtcgaaaacacggtgtgtcgaagtcctcattctcttggtcgaaatccatttgcactttgcagcatgt 833  Q
    ||| |||||| ||||       ||||||| |||||||||||||||| |||||||||||| ||| |||||||||||||||| |||||||||||||||||||    
T  20506884 taaccacatgtatgaaatatattaaatcactttgtcgaaaacacggcgtgtcgaagtccgcatgctcttggtcgaaatccctttgcactttgcagcatgt 20506785  T
Q  834 cgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggtgttaaca 905  Q
    ||||||||  ||||| |||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  20506784 cgaaataacacatctgccttgtcgaaaacataatcattagttcgaccaaatatttcatttttggtgttaaca 20506713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 31813783 - 31813648
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgct-ccaacatcttgtaataacaagttgtctcat 107  Q
    ||||||||| | ||||||||||||||||||||| ||  |||||||||||||||||||||||||||| || ||||||||| ||||||| ||||||||||||    
T  31813783 atcgttcaagcatcgcggtttatgacatcacttcatgaattctttaagaacattaatgtcagaatttcttccaacatctcgtaataaaaagttgtctcat 31813684  T
Q  108 gacaacatgatagaaaattgctcaagtgagcatgtt 143  Q
    ||||||||||||||||||||||||||||||||||||    
T  31813683 gacaacatgatagaaaattgctcaagtgagcatgtt 31813648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 797 - 905
Target Start/End: Complemental strand, 21946858 - 21946750
Alignment:
Q  797 tctcttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttg 896  Q
    ||||||||||||||||| ||| |||| || ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  21946858 tctcttggtcgaaatccctttacactctgaagcatgtcgaaataacccatctgccttatcgaaaacataatcatgagttcgaccaaatatttcatttttg 21946759  T
Q  897 gtgttaaca 905  Q
    |||||||||    
T  21946758 gtgttaaca 21946750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 473 - 591
Target Start/End: Complemental strand, 20507102 - 20506984
Alignment:
Q  473 tttgtcaccgcatgttcgaccttgctttaatattattattaccaccatgttcacgttgaaatactccaagacataataatagattttagacattgaatct 572  Q
    ||||||||| |||||||||| |||| |||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||| ||||||||||| ||||    
T  20507102 tttgtcaccacatgttcgactttgccttaatattattattgctaccattttcacgttgaaatactccaagtcataataatagaatttagacattggatct 20507003  T
Q  573 tgcataaggatggatcttg 591  Q
    || ||||||||||||||||    
T  20507002 tgaataaggatggatcttg 20506984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 7014135 - 7014248
Alignment:
Q  28 ttatgacatcacttaattcattctttaagaacattaatgtcagaattgc-tccaacatcttgtaataacaagttgtctcatgacaacatgatagaaaatt 126  Q
    |||||||||||||| || |||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||| ||||| |    
T  7014135 ttatgacatcacttcatacattctttaagaacattaatgtcaaaattgcatccaacatcttttaataacaagttgtctcatgacaacatgatcgaaaaat 7014234  T
Q  127 gctcaagtgagcat 140  Q
    ||| ||||||||||    
T  7014235 gctgaagtgagcat 7014248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 798 - 920
Target Start/End: Complemental strand, 31813247 - 31813125
Alignment:
Q  798 ctcttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttgg 897  Q
    |||||||||||||||  ||||||||||||| ||||||||||||| |||| | |||| |||||||||||||| ||||||||||||| |||||||||||||     
T  31813247 ctcttggtcgaaatctctttgcactttgcaacatgtcgaaataacccatttgccttgtcgaaaacataatcgtgagttcgaccaaatatttcatttttga 31813148  T
Q  898 tgttaacactatcataccaaaag 920  Q
    |||||||||| ||| || |||||    
T  31813147 tgttaacactgtcaaactaaaag 31813125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 352 - 450
Target Start/End: Original strand, 7014787 - 7014885
Alignment:
Q  352 atatatatagaccttgtagagaaaactaccactaaatcctacagtctatattaaaagtaaaaataacttcctataacttctaaagacactagaaaataa 450  Q
    |||||||||||| ||||||  ||||||||||||||||||||| ||||| ||||||| || |||||||||| |||||||||  |||||||||||||||||    
T  7014787 atatatatagactttgtaggaaaaactaccactaaatcctacggtctagattaaaaatagaaataacttcttataacttcctaagacactagaaaataa 7014885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 801 - 898
Target Start/End: Original strand, 7015053 - 7015150
Alignment:
Q  801 ttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggt 898  Q
    |||||| |||||| ||| ||||||||||||||||||||||| |||||| |||| ||||||| |||||||||| ||||||||| || ||| ||||||||    
T  7015053 ttggtcaaaatccctttacactttgcagcatgtcgaaataacccatctgccttgtcgaaaatataatcatgaattcgaccaaataattcctttttggt 7015150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 909 - 998
Target Start/End: Original strand, 476634 - 476723
Alignment:
Q  909 tcataccaaaagtaagtagacactccattccctaccctctttgaaacccgctcctcaaaccaactctcatcatcttcacccatcctgtcc 998  Q
    ||||||||||||||||||||||| ||||| ||||||||  | |||||||||||| ||||||||||| | ||| | |||||||||| ||||    
T  476634 tcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcagcgtcacccatcccgtcc 476723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 360
Target Start/End: Original strand, 7014325 - 7014471
Alignment:
Q  210 cattgatattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttt 309  Q
    |||| ||||||||||||||||||||||||||||| || ||||| ||  |  || ||||| ||||||| | |||| |   |||| |||| |||  ||||||    
T  7014325 cattaatattaaattgcaggaatgtaaagggtggttgaaatctatcaatttatccactcgtgaacccatatgctacgc-ggcgggggtgtta--gagttt 7014421  T
Q  310 tcagaaatcaagaaaccaacccattgttattattacaaaccgatatatata 360  Q
     ||||||||||||||||||||| ||||| ||||||||||  ||||||||||    
T  7014422 -cagaaatcaagaaaccaaccccttgttcttattacaaaatgatatatata 7014471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 815 - 905
Target Start/End: Complemental strand, 33270827 - 33270738
Alignment:
Q  815 tttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggtgttaaca 905  Q
    ||||||||||| |||||||||||| || |||| |  ||| ||||||  |||||||||||||||||||| ||||| ||||||||| ||||||    
T  33270827 tttgcactttggagcatgtcgaaagaacccatatggcttgtcgaaat-ataatcatgagttcgaccaagtattttatttttggtattaaca 33270738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 799 - 888
Target Start/End: Original strand, 10735342 - 10735431
Alignment:
Q  799 tcttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactattt 888  Q
    ||||||||||||||  |||| |||||||||||||| |||||||  ||||| |||| || |||| |||||||||| ||| ||||| |||||    
T  10735342 tcttggtcgaaatctctttgtactttgcagcatgttgaaataactcatctgccttgtcaaaaatataatcatgatttcaaccaaatattt 10735431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 19281968 - 19282020
Alignment:
Q  308 tttcagaaatcaagaaaccaacccattgttattattacaaaccgatatatata 360  Q
    |||||||||||||||||||||||| || || ||||||||||| ||||||||||    
T  19281968 tttcagaaatcaagaaaccaaccccttattcttattacaaactgatatatata 19282020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 373 - 423
Target Start/End: Complemental strand, 1494810 - 1494760
Alignment:
Q  373 aaaactaccactaaatcctacagtctatattaaaagtaaaaataacttcct 423  Q
    |||||||||| |||||||||| ||||| |||||||||| ||||||||||||    
T  1494810 aaaactaccaataaatcctacggtctaaattaaaagtagaaataacttcct 1494760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 27597255 - 27597178
Alignment:
Q  60 attaatgtcagaattgc-tccaacatcttgtaataacaagttgtctcatgacaacatgatagaaaattgctcaagtga 136  Q
    |||||||| |||||||| ||||||| ||| |||||||||||||||||||| |||| | |||| ||| | |||||||||    
T  27597255 attaatgttagaattgcatccaacaacttttaataacaagttgtctcatggcaacttaatagcaaaatactcaagtga 27597178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 1494880 - 1494824
Alignment:
Q  264 cactcatgaacccgtttgctcccatggcgtgggtattattgagttttcagaaatcaa 320  Q
    ||||| ||||||||||| |||||||||||||||| ||   |||||||||||||||||    
T  1494880 cactcctgaacccgttttctcccatggcgtgggtgttgcggagttttcagaaatcaa 1494824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 41636886 - 41636933
Alignment:
Q  21 tcgcggtttatgacatcacttaattcattctttaagaacattaatgtc 68  Q
    ||||||||||||||| ||||| || ||||||||||||| |||||||||    
T  41636886 tcgcggtttatgacaccacttcatgcattctttaagaatattaatgtc 41636933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 10734750 - 10734808
Alignment:
Q  60 attaatgtcagaattgc-tccaacatcttgtaataacaagttgtctcatgacaacatga 117  Q
    |||||| | |||||||| |||||||| || ||||||||||||||||||||| |||||||    
T  10734750 attaatattagaattgcatccaacatattttaataacaagttgtctcatgataacatga 10734808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 20507512 - 20507450
Alignment:
Q  64 atgtcagaattgc-tccaacatcttgtaataacaagttgtctcatgacaacatgatagaaaat 125  Q
    |||| |||||||| ||||||||||| |||||| ||||| |||||||| ||||| |||||||||    
T  20507512 atgttagaattgcatccaacatcttttaataataagttttctcatgaaaacataatagaaaat 20507450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 20507581 - 20507531
Alignment:
Q  10 tcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaaca 60  Q
    ||||||||  |||||||||||||| ||||||| || |||||||||||||||    
T  20507581 tcgttcaagtctcgcggtttatgatatcacttcatgcattctttaagaaca 20507531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 21947601 - 21947551
Alignment:
Q  10 tcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaaca 60  Q
    ||||||||  |||||||||||||| |||||| ||| |||||||||||||||    
T  21947601 tcgttcaagtctcgcggtttatgatatcactaaatgcattctttaagaaca 21947551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 325 - 382
Target Start/End: Complemental strand, 21947246 - 21947189
Alignment:
Q  325 ccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactacca 382  Q
    ||||||| || || ||||||||||| ||||||||||||| ||| ||| ||||||||||    
T  21947246 ccaaccctttcttcttattacaaactgatatatatagactttgcagaaaaaactacca 21947189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 21947532 - 21947471
Alignment:
Q  64 atgtcagaattgc-tccaacatcttgtaataacaagttgtctcatgacaacatgatagaaaa 124  Q
    |||| |||||||| ||||||||||| |||||| ||||| |||||||| ||||| ||||||||    
T  21947532 atgttagaattgcatccaacatcttttaataataagttttctcatgagaacataatagaaaa 21947471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 325 - 382
Target Start/End: Complemental strand, 31813467 - 31813410
Alignment:
Q  325 ccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactacca 382  Q
    ||||||| ||||| ||||||||||| ||||||||||||| ||| ||  ||||||||||    
T  31813467 ccaaccctttgttcttattacaaactgatatatatagactttgcaggaaaaactacca 31813410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 8e-67; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 217 - 449
Target Start/End: Complemental strand, 43043578 - 43043346
Alignment:
Q  217 attaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtat-tattgagttttcagaa 315  Q
    ||||||||||||||||||||||||||| ||||||||| |  ||||||||||||||||||| | |||||  ||| || |||    | |||   ||||||||    
T  43043578 attaaattgcaggaatgtaaagggtggttggaatctgccaatccatacactcatgaacccatatgctct-atgacgagggagggtgttggagtttcagaa 43043480  T
Q  316 atcaagaaaccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactaccactaaatcctacagtctatattaaaagtaaaaat 415  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43043479 atcaagaaaccaacccattgtaattattacaaactgatatatatagaccttgtagagaaaactaccactaaatcctacggtctatattaaaagtaaaaat 43043380  T
Q  416 aacttcctataacttctaaagacactagaaaata 449  Q
    ||||| ||||||||||  ||||||||||||||||    
T  43043379 aactttctataacttcctaagacactagaaaata 43043346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 46888712 - 46888847
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgct-ccaacatcttgtaataacaagttgtctcat 107  Q
    |||||||||  |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  46888712 atcgttcaagtctcgcggtttatgacatcacttcatgcattctttaagaacattaatgtcagaattgcttccaacatcttgtaataacaagttgtctcat 46888811  T
Q  108 gacaacatgatagaaaattgctcaagtgagcatgtt 143  Q
    ||||||| ||||||||||||||||||| ||||||||    
T  46888812 gacaacaagatagaaaattgctcaagtaagcatgtt 46888847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 213 - 382
Target Start/End: Original strand, 30786321 - 30786490
Alignment:
Q  213 tgatattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttttca 312  Q
    ||||||||||||| |||||| ||||||||||  ||||||||||  ||  | ||||| |||||||||||||||||||||||||||| |||  |||||||||    
T  30786321 tgatattaaattgtaggaatttaaagggtggtcggaatctgtcaatctctccactcttgaacccgtttgctcccatggcgtgggtgttacagagttttca 30786420  T
Q  313 gaaatcaagaaaccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactacca 382  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| ||||||||||    
T  30786421 gaaatcaagaaaccaacccattgttattattacaaactgatatatatagactttgaagaaaaaactacca 30786490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 215 - 450
Target Start/End: Complemental strand, 36729859 - 36729621
Alignment:
Q  215 atattaaattgca---ggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttttc 311  Q
    |||||||||||||   |||||||||||||||| |||||||||||  ||  | || || |||||||||| |||||||||| |||||| ||| | |||||||    
T  36729859 atattaaattgcacatggaatgtaaagggtggctggaatctgtcaatctgtccaatcctgaacccgttggctcccatggtgtgggtgttactaagttttc 36729760  T
Q  312 agaaatcaagaaaccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactaccactaaatcctacagtctatattaaaagtaa 411  Q
    | ||||||||||||||||   ||||| |||||||||||  |||||||||||||||||||  |||||||| | |||||||||| || || ||||||||||     
T  36729759 aaaaatcaagaaaccaacattttgttcttattacaaactcatatatatagaccttgtaggaaaaactacaattaaatcctacggtttaaattaaaagtag 36729660  T
Q  412 aaataacttcctataacttctaaagacactagaaaataa 450  Q
    ||||||||||||||||||||  || ||||||||||||||    
T  36729659 aaataacttcctataacttcctaaaacactagaaaataa 36729621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 30786116 - 30786251
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgct-ccaacatcttgtaataacaagttgtctcat 107  Q
    |||||||||  |||||||||||||||||||||| || |||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||    
T  30786116 atcgttcaagtctcgcggtttatgacatcacttcatgcattctttaagaacattaatgtcagaatggcttccaacatcttgtaataacaaattgtctcat 30786215  T
Q  108 gacaacatgatagaaaattgctcaagtgagcatgtt 143  Q
    |||||||| |||||||||||||||||||||||||||    
T  30786216 gacaacattatagaaaattgctcaagtgagcatgtt 30786251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 46886691 - 46886826
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgct-ccaacatcttgtaataacaagttgtctcat 107  Q
    |||||||||  |||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  46886691 atcgttcaagtctcgcggtttatgacatcacttcatgcattctttaagaacgttaatgtcagaattgcttccaacatcttgtaataacaagttgtctcat 46886790  T
Q  108 gacaacatgatagaaaattgctcaagtgagcatgtt 143  Q
    ||||||| ||||||||||||||||||| ||||||||    
T  46886791 gacaacaagatagaaaattgctcaagtaagcatgtt 46886826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 777 - 905
Target Start/End: Original strand, 46887205 - 46887333
Alignment:
Q  777 cggtgtgtcgaagtcctcattctcttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttc 876  Q
    |||||| ||||||||   || |||||||||||||||  ||||||||||||| |||||||||||||  ||||| |||| |||||||||||||||| |||||    
T  46887205 cggtgtatcgaagtctgtatgctcttggtcgaaatctctttgcactttgcaacatgtcgaaataactcatctgccttgtcgaaaacataatcattagttc 46887304  T
Q  877 gaccaactatttcatttttggtgttaaca 905  Q
    |||||| ||||||||||||||||||||||    
T  46887305 gaccaaatatttcatttttggtgttaaca 46887333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 215 - 426
Target Start/End: Complemental strand, 26049748 - 26049538
Alignment:
Q  215 atattaaattgca-ggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttttcag 313  Q
    ||||||||||||| ||||||||||| || | || ||||||||   |  | ||||| |||||| |||||||||| |||||||||| |||   |||||| ||    
T  26049748 atattaaattgcatggaatgtaaagagttgttgaaatctgtcaacctgtccactcctgaacctgtttgctcccttggcgtgggtgttacaaagtttttag 26049649  T
Q  314 aaatcaagaaaccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactaccactaaatcctacagtctatattaaaagtaaaa 413  Q
    |||||| ||||||| ||   | || ||||||||||| ||||||||  ||||||||||| ||||||||||||||||| ||| ||||| |||||||||| ||    
T  26049648 aaatcatgaaaccagccatctcttcttattacaaactgatatata--gaccttgtagaaaaaactaccactaaatcatacggtctaaattaaaagtagaa 26049551  T
Q  414 ataacttcctata 426  Q
    |||||||||||||    
T  26049550 ataacttcctata 26049538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 801 - 905
Target Start/End: Complemental strand, 43043197 - 43043093
Alignment:
Q  801 ttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggtgt 900  Q
    ||||||||||||| ||||||||||||||  ||| ||||||| |||||| |||| |||||||||||||||||||||| ||||| |||||||||||||||||    
T  43043197 ttggtcgaaatccctttgcactttgcagtgtgttgaaataacccatctgccttgtcgaaaacataatcatgagttccaccaaatatttcatttttggtgt 43043098  T
Q  901 taaca 905  Q
    |||||    
T  43043097 taaca 43043093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 308 - 450
Target Start/End: Original strand, 20062858 - 20063005
Alignment:
Q  308 tttcagaaatcaagaaaccaacccattgttattattacaaaccgatatatata------gaccttgtagagaaaactaccactaaatcctacagtctata 401  Q
    ||||| |||||||||||||||||  || |||||||||||||| ||||||||||      ||||||||||| ||| |||||||||||||||| |||||| |    
T  20062858 tttcataaatcaagaaaccaaccatttattattattacaaactgatatatatatatatagaccttgtaga-aaacctaccactaaatcctagagtctaaa 20062956  T
Q  402 ttaaaagtaaaaataacttcctataacttctaaagacactagaaaataa 450  Q
    ||||||||| ||| ||||||||||||||||  |||||| ||||||||||    
T  20062957 ttaaaagtagaaacaacttcctataacttcctaagacagtagaaaataa 20063005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 777 - 906
Target Start/End: Original strand, 46889226 - 46889355
Alignment:
Q  777 cggtgtgtcgaagtcctcattctcttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttc 876  Q
    |||||| ||||||||   || |||||||||||||||  ||||||||||| | |||||||||||||  ||||| |||| |||||||||||||||| |||||    
T  46889226 cggtgtatcgaagtctgtatgctcttggtcgaaatctctttgcactttgaaacatgtcgaaataactcatctgccttgtcgaaaacataatcattagttc 46889325  T
Q  877 gaccaactatttcatttttggtgttaacac 906  Q
     ||||| |||||||||||||||||||||||    
T  46889326 aaccaaatatttcatttttggtgttaacac 46889355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 43043739 - 43043644
Alignment:
Q  31 tgacatcacttaattcattctttaagaacattaatgtcagaattgct-ccaacatcttgtaataacaagttgtctcatgacaacatgatagaaaat 125  Q
    ||||||||||| ||| ||  | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  43043739 tgacatcacttcatttatgatataagaacattaatgtcagaattgcttccaacatcttgtaataacaagttgtctcatgacaacgtgatagaaaat 43043644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 798 - 904
Target Start/End: Complemental strand, 26049375 - 26049269
Alignment:
Q  798 ctcttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttgg 897  Q
    ||||||||||||||   |||||||||||||||||||||||||||  |||||| ||||||||||| |||||||||| ||||||||| ||||| ||||||||    
T  26049375 ctcttggtcgaaatatctttgcactttgcagcatgtcgaaataactcatctaacttatcgaaaatataatcatgatttcgaccaaatattttatttttgg 26049276  T
Q  898 tgttaac 904  Q
    | |||||    
T  26049275 tattaac 26049269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 821 - 905
Target Start/End: Complemental strand, 36729455 - 36729371
Alignment:
Q  821 ctttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggtgttaaca 905  Q
    ||||||||||||| ||||||| ||||||| ||||||||||| |||||||||| ||||||||| ||||| ||||||||| ||||||    
T  36729455 ctttgcagcatgtagaaataacccatctaacttatcgaaaatataatcatgatttcgaccaaatattttatttttggtattaaca 36729371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 823 - 905
Target Start/End: Original strand, 30786668 - 30786750
Alignment:
Q  823 ttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggtgttaaca 905  Q
    ||||| ||||||||||||| |||||| |||| ||||||| |||||||| |||||||| || ||||||||||||||||||||||    
T  30786668 ttgcaacatgtcgaaataacccatctgccttgtcgaaaatataatcataagttcgactaaatatttcatttttggtgttaaca 30786750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 909 - 993
Target Start/End: Complemental strand, 3544820 - 3544736
Alignment:
Q  909 tcataccaaaagtaagtagacactccattccctaccctctttgaaacccgctcctcaaaccaactctcatcatcttcacccatcc 993  Q
    ||||||||||||||||||||||| ||||| ||||||||  | |||||||||||| ||||||||||| | ||||| ||||||||||    
T  3544820 tcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcc 3544736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 798 - 905
Target Start/End: Complemental strand, 26051474 - 26051367
Alignment:
Q  798 ctcttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttgg 897  Q
    |||||||||||||||  |||||||||||||  ||||||||| ||  |||||| ||| ||||||| |||||||||| |||||| || ||||| |||||| |    
T  26051474 ctcttggtcgaaatctttttgcactttgcaatatgtcgaaaaaactcatctaacttgtcgaaaatataatcatgatttcgacaaaatattttattttttg 26051375  T
Q  898 tgttaaca 905  Q
    | ||||||    
T  26051374 tattaaca 26051367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 909 - 974
Target Start/End: Complemental strand, 1248304 - 1248239
Alignment:
Q  909 tcataccaaaagtaagtagacactccattccctaccctctttgaaacccgctcctcaaaccaactc 974  Q
    ||||||||||||||||||| ||  ||||||||||||||||| || |||| ||||||||||||||||    
T  1248304 tcataccaaaagtaagtagccaagccattccctaccctcttcgacaccctctcctcaaaccaactc 1248239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 756 - 840
Target Start/End: Original strand, 16803018 - 16803102
Alignment:
Q  756 taaatcattttgtcgaaaacacggtgtgtcgaagtcctcattctcttggtcgaaatccatttgcactttgcagcatgtcgaaata 840  Q
    ||||||| || |||||||| | ||| |||| |||||   || |||||||||||||||  ||||||||||||||||||||||||||    
T  16803018 taaatcacttggtcgaaaatatggtatgtcaaagtctgtatgctcttggtcgaaatcactttgcactttgcagcatgtcgaaata 16803102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 20059851 - 20059903
Alignment:
Q  308 tttcagaaatcaagaaaccaacccattgttattattacaaaccgatatatata 360  Q
    |||||||||| ||||||||||||  ||||||||||||||||| ||||||||||    
T  20059851 tttcagaaattaagaaaccaaccatttgttattattacaaactgatatatata 20059903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 26049880 - 26049806
Alignment:
Q  69 agaattgc-tccaacatcttgtaataa-caagttgtctcatgacaacatgatag-aaaattgctcaagtgagcat 140  Q
    |||||||| ||| ||||||| |||||| |||||||| |||||||||||| |||| ||||||||||||||||||||    
T  26049880 agaattgcatccgacatcttttaataaacaagttgtttcatgacaacattatagaaaaattgctcaagtgagcat 26049806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 36730014 - 36729952
Alignment:
Q  64 atgtcagaattgc-tccaacatcttgtaataacaagttgtctcatgacaacatgatagaaaat 125  Q
    |||| |||||||| ||||||||||| |||||| |||||||||||||| ||||| |||||||||    
T  36730014 atgttagaattgcatccaacatcttttaataataagttgtctcatgaaaacataatagaaaat 36729952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 36730083 - 36730033
Alignment:
Q  10 tcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaaca 60  Q
    ||||||||| |||||||||||||| ||||||| || |||||||||||||||    
T  36730083 tcgttcaaatctcgcggtttatgatatcacttcatgcattctttaagaaca 36730033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 20059621 - 20059676
Alignment:
Q  85 cttgtaataacaagttgtctcatgacaacatgatagaaaattgctcaagtgagcat 140  Q
    |||||||||||||||| ||||||||||||||  |  |||| |||||||||||||||    
T  20059621 cttgtaataacaagttatctcatgacaacatagttaaaaaatgctcaagtgagcat 20059676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 822 - 905
Target Start/End: Original strand, 20063191 - 20063273
Alignment:
Q  822 tttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggtgttaaca 905  Q
    |||||||||||||||||||| | ||||  ||| ||| ||| |||||||||| ||||||||| ||||  ||||||||| ||||||    
T  20063191 tttgcagcatgtcgaaataacctatctgacttgtcg-aaatataatcatgacttcgaccaaatattatatttttggtattaaca 20063273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 20062624 - 20062701
Alignment:
Q  64 atgtcagaattgc-tccaacatcttgtaataacaagttgtctcatgacaacatgatagaaaattgctcaagtgagcat 140  Q
    |||| |||||||| ||| ||||||| ||||||||| ||||||||| | |||||  ||| ||| |||||||||||||||    
T  20062624 atgttagaattgcatccgacatcttttaataacaaattgtctcatcataacatagtaggaaaatgctcaagtgagcat 20062701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 325 - 382
Target Start/End: Original strand, 46887006 - 46887063
Alignment:
Q  325 ccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactacca 382  Q
    ||||||| || || ||||||||||| ||||||||||||| ||| ||| ||||||||||    
T  46887006 ccaaccctttcttcttattacaaactgatatatatagactttgaagaaaaaactacca 46887063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 1e-65; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 213 - 424
Target Start/End: Complemental strand, 218861 - 218650
Alignment:
Q  213 tgatattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttttca 312  Q
    ||||||||||||| |||||||||||||||||  ||||||||||  ||  | ||||| |||||||||||||||||||||||||||| |||   ||||||||    
T  218861 tgatattaaattgtaggaatgtaaagggtggtcggaatctgtcaatctctccactcctgaacccgtttgctcccatggcgtgggtgttacaaagttttca 218762  T
Q  313 gaaatcaagaaaccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactaccactaaatcctacagtctatattaaaagtaaa 412  Q
    |||||||||||||||||||| |||||||||||||||  |||||||||||| |||| ||||||||||||||||||||||||| ||||||||| |||||| |    
T  218761 gaaatcaagaaaccaacccagtgttattattacaaattgatatatatagatcttgcagagaaaactaccactaaatcctacggtctatatttaaagtaga 218662  T
Q  413 aataacttccta 424  Q
    ||||||||||||    
T  218661 aataacttccta 218650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 4588907 - 4588772
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgct-ccaacatcttgtaataacaagttgtctcat 107  Q
    ||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4588907 atcgttcaagcctcgcggtttatgacatcacttcatgcattctttaagaacattaatgtcagaattgcttccaacatcttgtaataacaagttgtctcat 4588808  T
Q  108 gacaacatgatagaaaattgctcaagtgagcatgtt 143  Q
    ||||||||||||||||||||||||||||||||||||    
T  4588807 gacaacatgatagaaaattgctcaagtgagcatgtt 4588772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 219065 - 218930
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgct-ccaacatcttgtaataacaagttgtctcat 107  Q
    ||||||||| ||||||| ||||||||||||||| || |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  219065 atcgttcaagcctcgcgatttatgacatcacttcatgcattctttaaaaacattaatgtcagaattgcttccaacatcttgtaataacaagttgtctcat 218966  T
Q  108 gacaacatgatagaaaattgctcaagtgagcatgtt 143  Q
    ||||||||||||||||||||||||||||||||||||    
T  218965 gacaacatgatagaaaattgctcaagtgagcatgtt 218930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 210 - 382
Target Start/End: Complemental strand, 4588705 - 4588533
Alignment:
Q  210 cattgatattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttt 309  Q
    |||||||||||||||| ||||||||||| ||||| |||||||||||  ||  | |||||  | ||||||||||||||||||||||||| |||  ||||||    
T  4588705 cattgatattaaattgtaggaatgtaaaaggtggttggaatctgtcaatctctccactccaggacccgtttgctcccatggcgtgggtgttacagagttt 4588606  T
Q  310 tcagaaatcaagaaaccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactacca 382  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  4588605 tcagaaatcaagaaaccaacccattgttattattacaaactgatatatatagactttgtagaaaaaactacca 4588533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 798 - 908
Target Start/End: Complemental strand, 4588370 - 4588260
Alignment:
Q  798 ctcttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttgg 897  Q
    |||||||||||||||  ||||||||||||| ||||||||||||| |||||| |||| ||||||| |||||||||||||||||||| ||||||||||||||    
T  4588370 ctcttggtcgaaatctctttgcactttgcaacatgtcgaaataacccatctgccttgtcgaaaatataatcatgagttcgaccaaatatttcatttttgg 4588271  T
Q  898 tgttaacacta 908  Q
    |||||||||||    
T  4588270 tgttaacacta 4588260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 801 - 895
Target Start/End: Complemental strand, 218496 - 218402
Alignment:
Q  801 ttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcattttt 895  Q
    ||||||||||||| ||||||||||||| ||||||||||||| |||||| |||| | |||||||||||||||||||||||||| ||||||||||||    
T  218496 ttggtcgaaatccctttgcactttgcaacatgtcgaaataacccatctgccttgttgaaaacataatcatgagttcgaccaaatatttcattttt 218402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 2e-61; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 213 - 450
Target Start/End: Original strand, 49020951 - 49021184
Alignment:
Q  213 tgatattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttttca 312  Q
    ||||||||||||| |||||||||||||||||  ||||||||||  ||  | ||||| |||||||| ||||||||||||||||||| |||  |||||||||    
T  49020951 tgatattaaattgtaggaatgtaaagggtggtcggaatctgtcaatctctccactcttgaacccgcttgctcccatggcgtgggtgttacagagttttca 49021050  T
Q  313 gaaatcaagaaaccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactaccactaaatcctacagtctatattaaaagtaaa 412  Q
    |||||||||||||||||| |||||||||||||||||| |    |||||||| ||||||| ||||||||||||||||| ||| ||||||||| |||||| |    
T  49021051 gaaatcaagaaaccaaccaattgttattattacaaactg----atatagactttgtagaaaaaactaccactaaatcttacggtctatattgaaagtaga 49021146  T
Q  413 aataacttcctataacttctaaagacactagaaaataa 450  Q
    |||||||||||||||| ||  |||||||| ||||||||    
T  49021147 aataacttcctataacctcctaagacactggaaaataa 49021184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 264 - 456
Target Start/End: Original strand, 43543433 - 43543635
Alignment:
Q  264 cactcatgaacccgtttgctcccatggcgtgggtattattgagttttcagaaatcaagaaaccaacccattgttattattacaaaccgatat-------- 355  Q
    ||||| ||||||| |||||||||||||||||||| |||  ||||||| | |||||||||||||||| ||||||||||||||||||| |||||            
T  43543433 cactcctgaacccatttgctcccatggcgtgggtgttacagagtttttaaaaatcaagaaaccaactcattgttattattacaaactgatatatatatat 43543532  T
Q  356 --atatagaccttgtagagaaaactaccactaaatcctacagtctatattaaaagtaaaaataacttcctataacttctaaagacactagaaaataatct 453  Q
      ||||||||||||||||||||||||||| |||||||||  |||||||||| ||||| ||||||||||||||||| ||  |||||||||||||||||| |    
T  43543533 atatatagaccttgtagagaaaactaccattaaatcctaaggtctatattataagtagaaataacttcctataacctcctaagacactagaaaataattt 43543632  T
Q  454 tca 456  Q
    |||    
T  43543633 tca 43543635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 49020746 - 49020881
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgct-ccaacatcttgtaataacaagttgtctcat 107  Q
    ||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||| |||||  || |||||||||||||||||||| |||||||||    
T  49020746 atcgttcaaacctcgcggtttatgacatcacttcatgcattctttaaaaacattaatgtgagaatgacttccaacatcttgtaataacaaattgtctcat 49020845  T
Q  108 gacaacatgatagaaaattgctcaagtgagcatgtt 143  Q
    ||||||||||||||||||||||||| ||||||||||    
T  49020846 gacaacatgatagaaaattgctcaattgagcatgtt 49020881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 304 - 426
Target Start/End: Original strand, 25484505 - 25484627
Alignment:
Q  304 gagttttcagaaatcaagaaaccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactaccactaaatcctacagtctatatt 403  Q
    ||||||| |||||||||||||||||||  ||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||| ||| ||||| |||    
T  25484505 gagtttttagaaatcaagaaaccaaccatttgttcttattacaaaccgataaatatagaccttgtagaaaaaactaccactaaatcatacggtctaaatt 25484604  T
Q  404 aaaagtaaaaataacttcctata 426  Q
    ||||||| ||| |||||||||||    
T  25484605 aaaagtagaaacaacttcctata 25484627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 16467344 - 16467457
Alignment:
Q  28 ttatgacatcacttaattcattctttaagaacattaatgtcagaattgc-tccaacatcttgtaataacaagttgtctcatgacaacatgatagaaaatt 126  Q
    |||||||||||||| || ||||||| ||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||| |    
T  16467344 ttatgacatcacttgatgcattcttgaagaacattaatgtcagaattgcatccaacatctattaataacaagttgtctcatgacaacatgatagaaaaat 16467443  T
Q  127 gctcaagtgagcat 140  Q
    |||||||| |||||    
T  16467444 gctcaagttagcat 16467457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 215 - 450
Target Start/End: Original strand, 16467539 - 16467770
Alignment:
Q  215 atattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttttcaga 314  Q
    |||||||||||||| |||||||||||||| || ||||| ||  |||||||||||||||| || ||||||||   |||| |||| |||  ||| ||  |||    
T  16467539 atattaaattgcagtaatgtaaagggtggttgaaatctatcaatccatacactcatgaatccatttgctccgc-ggcgggggtgtta--gagctta-aga 16467634  T
Q  315 aatcaagaaaccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactaccactaaatcctacagtctatattaaaagtaaaaa 414  Q
    |||||||||||||||| |||||| || |||||||| |||||||||||||| |||||  |||||||||||| |||||||| || |  |||| || || |||    
T  16467635 aatcaagaaaccaacctattgttcttgttacaaactgatatatatagaccatgtaggaaaaactaccactgaatcctacggtttggattacaaatagaaa 16467734  T
Q  415 taacttcctataacttctaaagacactagaaaataa 450  Q
    ||||||| |||||| ||  |||||||| ||||||||    
T  16467735 taacttcttataacgtcctaagacacttgaaaataa 16467770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 43543194 - 43543320
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgct-ccaacatcttgtaataacaagttgtctcat 107  Q
    ||||||||| ||||||||||||||||||||||| || ||         ||||||||||||| ||| ||| |||||||||||||||||||| |||||||||    
T  43543194 atcgttcaagcctcgcggtttatgacatcacttcatgca---------aacattaatgtcaaaatggcttccaacatcttgtaataacaaattgtctcat 43543284  T
Q  108 gacaacatgatagaaaattgctcaagtgagcatgtt 143  Q
    |||||||||||||||||||| |||||||||||||||    
T  43543285 gacaacatgatagaaaattgttcaagtgagcatgtt 43543320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 821 - 903
Target Start/End: Original strand, 39944908 - 39944990
Alignment:
Q  821 ctttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggtgttaa 903  Q
    ||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39944908 ctttgcagcatgtcgaaataacccatctgccttgtcgaaaacataatcatgagttcgaccaaatatttcatttttggtgttaa 39944990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 25482960 - 25483038
Alignment:
Q  60 attaatgtcagaattgc-tccaacatcttgtaataacaagttgtctcatgacaacatgatagaaaattgctcaagtgag 137  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25482960 attaatgttagaattgcatccaacatcttttaataacaagttgtctcatgacaacatgatagaaaaatgctcaagtgag 25483038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 906 - 998
Target Start/End: Original strand, 31675349 - 31675441
Alignment:
Q  906 ctatcataccaaaagtaagtagacactccattccctaccctctttgaaacccgctcctcaaaccaactctcatcatcttcacccatcctgtcc 998  Q
    |||||||||||||||||||||||| | ||||| |||||| || | |||||||||||||||||||||||| | |||||| ||||||||| ||||    
T  31675349 ctatcataccaaaagtaagtagacgcgccattacctaccttcctcgaaacccgctcctcaaaccaactcccctcatctacacccatcccgtcc 31675441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 352 - 420
Target Start/End: Original strand, 39944669 - 39944737
Alignment:
Q  352 atatatatagaccttgtagagaaaactaccactaaatcctacagtctatattaaaagtaaaaataactt 420  Q
    ||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||    
T  39944669 atatatatataccttgtagagaaaactaccgctaaatcctacggtctatattaaaagtagaaataactt 39944737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 801 - 882
Target Start/End: Original strand, 49021419 - 49021500
Alignment:
Q  801 ttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaa 882  Q
    ||||||||||||||||||||||||||||| |||||||| ||   |||| ||||||| ||||||||||||| |||||||||||    
T  49021419 ttggtcgaaatccatttgcactttgcagcctgtcgaaaaaacatatctgccttatcaaaaacataatcattagttcgaccaa 49021500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 906 - 998
Target Start/End: Complemental strand, 31921073 - 31920981
Alignment:
Q  906 ctatcataccaaaagtaagtagacactccattccctaccctctttgaaacccgctcctcaaaccaactctcatcatcttcacccatcctgtcc 998  Q
    |||||||||||||||||||||||| | ||||| |||||| || | ||||||| |||||||||||||||| | |||||| ||||||||| ||||    
T  31921073 ctatcataccaaaagtaagtagacgcgccattacctaccttcctcgaaacccactcctcaaaccaactcccctcatctacacccatcccgtcc 31920981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 270 - 360
Target Start/End: Original strand, 17767323 - 17767414
Alignment:
Q  270 tgaacccgtttgctcccatggcgtgggtattattgagtttt-cagaaatcaagaaaccaacccattgttattattacaaaccgatatatata 360  Q
    |||| ||||||||||||||||||||||| ||||  | |||| ||||||||||||||||||||| || || ||||||||||| ||||||||||    
T  17767323 tgaagccgtttgctcccatggcgtgggtgttataaattttttcagaaatcaagaaaccaaccctttattcttattacaaactgatatatata 17767414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 270 - 360
Target Start/End: Original strand, 19068643 - 19068734
Alignment:
Q  270 tgaacccgtttgctcccatggcgtgggtattattgagtttt-cagaaatcaagaaaccaacccattgttattattacaaaccgatatatata 360  Q
    |||| ||||||||||||||||||||||| ||||  | |||| ||||||||||||||||||||| || || ||||||||||| ||||||||||    
T  19068643 tgaagccgtttgctcccatggcgtgggtgttataaattttttcagaaatcaagaaaccaaccctttattcttattacaaactgatatatata 19068734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 801 - 891
Target Start/End: Original strand, 43543767 - 43543857
Alignment:
Q  801 ttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcat 891  Q
    ||||||||||||||||||||||||||||| |||||||||||  ||||| |||| ||||  | | ||||| |||||||||||| ||||||||    
T  43543767 ttggtcgaaatccatttgcactttgcagcctgtcgaaataactcatctgccttgtcgacgatagaatcaggagttcgaccaaatatttcat 43543857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 39944370 - 39944431
Alignment:
Q  64 atgtcagaattgc-tccaacatcttgtaataacaagttgtctcatgacaacatgatagaaaa 124  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  39944370 atgttagaattgcatccaacatcttttaataacaagttgtctcatgacaacataatagaaaa 39944431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 799 - 907
Target Start/End: Original strand, 25484818 - 25484925
Alignment:
Q  799 tcttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggt 898  Q
    |||||||||||||   ||| ||||||||||||||||||||||| | |||   ||||||| |||||||||||||| ||||||||| ||||  |||||| ||    
T  25484818 tcttggtcgaaatttctttacactttgcagcatgtcgaaataacctatcagacttatcg-aaacataatcatgatttcgaccaaatattatattttttgt 25484916  T
Q  899 gttaacact 907  Q
     ||||||||    
T  25484917 attaacact 25484925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 798 - 897
Target Start/End: Complemental strand, 49237576 - 49237478
Alignment:
Q  798 ctcttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttgg 897  Q
    |||||| ||||||||  |||| | ||||||||||||||||||||  ||||||||||||| | || |||||||||| ||||||| | ||||| ||||||||    
T  49237576 ctcttgatcgaaatctctttgtattttgcagcatgtcgaaataactcatctaccttatcaagaatataatcatgatttcgaccgaatattt-atttttgg 49237478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 798 - 840
Target Start/End: Original strand, 36519008 - 36519050
Alignment:
Q  798 ctcttggtcgaaatccatttgcactttgcagcatgtcgaaata 840  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  36519008 ctcttggtcgaaatccatttgcactttgcagcatgtcaaaata 36519050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 799 - 848
Target Start/End: Original strand, 17767704 - 17767753
Alignment:
Q  799 tcttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatct 848  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||||||||    
T  17767704 tcttagtcgaaatccctttgcactttgcaacatgtcgaaataatccatct 17767753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 799 - 848
Target Start/End: Original strand, 19069005 - 19069054
Alignment:
Q  799 tcttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatct 848  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||||||||    
T  19069005 tcttagtcgaaatccctttgcactttgcaacatgtcgaaataatccatct 19069054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 798 - 841
Target Start/End: Complemental strand, 1257742 - 1257699
Alignment:
Q  798 ctcttggtcgaaatccatttgcactttgcagcatgtcgaaataa 841  Q
    |||||| ||||||||| ||||||||||||||||||| |||||||    
T  1257742 ctcttgctcgaaatccgtttgcactttgcagcatgttgaaataa 1257699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 296
Target Start/End: Original strand, 25483123 - 25483205
Alignment:
Q  215 atattaaattgca-ggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtggg 296  Q
    ||||||||||||| |||||||||| ||||| |||||| ||||   | || ||||| |||||||||||| |||||||| |||||    
T  25483123 atattaaattgcatggaatgtaaatggtggttggaatatgtcaacctatccactcctgaacccgtttgttcccatggtgtggg 25483205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 51837814 - 51837852
Alignment:
Q  77 tccaacatcttgtaataacaagttgtctcatgacaacat 115  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  51837814 tccaacaacttttaataacaagttgtctcatgacaacat 51837852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 473 - 522
Target Start/End: Complemental strand, 49237752 - 49237703
Alignment:
Q  473 tttgtcaccgcatgttcgaccttgctttaatattattattaccaccatgt 522  Q
    ||||||||||||| |||||| |||||||| |||||||| |||||| ||||    
T  49237752 tttgtcaccgcatattcgactttgctttattattattactaccactatgt 49237703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 4e-56; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 10375438 - 10375303
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgct-ccaacatcttgtaataacaagttgtctcat 107  Q
    |||||||||  |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10375438 atcgttcaagtctcgcggtttatgacatcacttcatacattctttaagaacattaatgtcagaattgcttccaacatcttgtaataacaagttgtctcat 10375339  T
Q  108 gacaacatgatagaaaattgctcaagtgagcatgtt 143  Q
    ||||||||||||||||||||||||||||||||||||    
T  10375338 gacaacatgatagaaaattgctcaagtgagcatgtt 10375303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 10377700 - 10377565
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgct-ccaacatcttgtaataacaagttgtctcat 107  Q
    ||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10377700 atcgttcaagcctcgcggtttatgacatcacttcatacattttttaagaacattaatgtcagaattgcttccaacatcttgtaataacaagttgtctcat 10377601  T
Q  108 gacaacatgatagaaaattgctcaagtgagcatgtt 143  Q
    ||||||||||||||||||||||||||||||||||||    
T  10377600 gacaacatgatagaaaattgctcaagtgagcatgtt 10377565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 19258759 - 19258894
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgct-ccaacatcttgtaataacaagttgtctcat 107  Q
    |||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19258759 atcgttcaagtctcgcggtttatgacatcacttcattcattctttaagaacattaatgtcagaattgcttccaacatcttgtaataacaagttgtctcat 19258858  T
Q  108 gacaacatgatagaaaattgctcaagtgagcatgtt 143  Q
    |||||| |||||||||||||||||||||||||||||    
T  19258859 gacaacttgatagaaaattgctcaagtgagcatgtt 19258894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 24573770 - 24573905
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgc-tccaacatcttgtaataacaagttgtctcat 107  Q
    ||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24573770 atcgttcaagcctcgtggtttatgacatcacttcatgcattctttaagaacattaatgtcagaattgcctccaacatcttgtaataacaagttgtctcat 24573869  T
Q  108 gacaacatgatagaaaattgctcaagtgagcatgtt 143  Q
    |||||| |||||||||||||||||||||||||||||    
T  24573870 gacaacttgatagaaaattgctcaagtgagcatgtt 24573905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 266 - 450
Target Start/End: Original strand, 27613965 - 27614152
Alignment:
Q  266 ctcatgaacccgtttgctcccatggcgtgggtattattgagttttcagaaatcaagaaaccaacccattgttattattacaaaccg----atatatatag 361  Q
    |||||||||||||||||||||||||||||||| |||  || |||||||||||||||||||||||| |||||||| ||||||||| |    ||||||||||    
T  27613965 ctcatgaacccgtttgctcccatggcgtgggtgttacagatttttcagaaatcaagaaaccaaccaattgttataattacaaactgatatatatatatag 27614064  T
Q  362 accttgtagagaaaactaccactaaatcctacagtctatattaaaagtaaaaataacttcctataacttctaaagacactagaaaataa 450  Q
    || |||||||||||||||||||||||| |||| |||||| ||||||||| ||||||||||||||||| ||  |||||||||||||||||    
T  27614065 actttgtagagaaaactaccactaaattctacggtctat-ttaaaagtagaaataacttcctataacctcctaagacactagaaaataa 27614152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 27613718 - 27613853
Alignment:
Q  9 atcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaacattaatgtcagaattgct-ccaacatcttgtaataacaagttgtctcat 107  Q
    ||||||||| |||||| |||||||||||||||| || |||||||||||||||||||| ||||||| ||| |||||||||||||||||||| |||||||||    
T  27613718 atcgttcaagcctcgcagtttatgacatcacttcatgcattctttaagaacattaatctcagaatggcttccaacatcttgtaataacaaattgtctcat 27613817  T
Q  108 gacaacatgatagaaaattgctcaagtgagcatgtt 143  Q
    ||||||||||||||||||||||||||||||||||||    
T  27613818 gacaacatgatagaaaattgctcaagtgagcatgtt 27613853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 213 - 360
Target Start/End: Original strand, 24573975 - 24574122
Alignment:
Q  213 tgatattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttttca 312  Q
    ||||||||||||| |||||||||||||||||  ||||| ||||  ||  | ||||| ||||||| |||||||||||||||||||| |||  |||||||||    
T  24573975 tgatattaaattgtaggaatgtaaagggtggtcggaatttgtcaatctctgcactcctgaacccatttgctcccatggcgtgggtgttacagagttttca 24574074  T
Q  313 gaaatcaagaaaccaacccattgttattattacaaaccgatatatata 360  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24574075 gaaatcaagaaaccaacccattgttattattacaaactgatatatata 24574122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 213 - 456
Target Start/End: Complemental strand, 10377495 - 10377235
Alignment:
Q  213 tgatattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttttca 312  Q
    ||||||||||||| |||||||||||||||||  ||||| ||||  ||  | || || |||||  |||||||||||||||||||||||||  |||||||||    
T  10377495 tgatattaaattgtaggaatgtaaagggtggtcggaatatgtcaatctctccattcctgaacttgtttgctcccatggcgtgggtattacagagttttca 10377396  T
Q  313 gaaatcaagaaaccaacccattgttattattacaaaccgatat------------------atatagaccttgtagagaaaactaccactaaatcctaca 394  Q
    ||||||||||||| ||||| ||||||||||||||||| |||||                  ||||||||||| ||||||||||||||||||||| |||      
T  10377395 gaaatcaagaaactaaccc-ttgttattattacaaactgatatatatatacacacacacacatatagaccttatagagaaaactaccactaaattctaag 10377297  T
Q  395 gtctatattaaaagtaaaaataacttcctataacttctaaagacactagaaaataatcttca 456  Q
     ||||||||||||||| ||||||||||||||||| ||  |||||||||||||||||| ||||    
T  10377296 atctatattaaaagtagaaataacttcctataacctcctaagacactagaaaataattttca 10377235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 213 - 360
Target Start/End: Complemental strand, 10375230 - 10375083
Alignment:
Q  213 tgatattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttttca 312  Q
    ||||||||||||| ||||||||||||||||| |||||| ||||  ||  | || || ||||||||||| |||||||||||||||| |||  |||||||||    
T  10375230 tgatattaaattgtaggaatgtaaagggtggttggaatatgtcaatctctccattcctgaacccgtttactcccatggcgtgggtgttacagagttttca 10375131  T
Q  313 gaaatcaagaaaccaacccattgttattattacaaaccgatatatata 360  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  10375130 gaaatcaagaaaccaaccccttgttattattacaaactgatatatata 10375083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 215 - 450
Target Start/End: Complemental strand, 22615795 - 22615564
Alignment:
Q  215 atattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttttcaga 314  Q
    |||||||||||||| |||||||||||||| || ||||| ||  |||||||||||||||| || ||||||||   |||| |||| |||  ||| ||  |||    
T  22615795 atattaaattgcagtaatgtaaagggtggttgaaatctatcaatccatacactcatgaatccatttgctccgc-ggcgggggtgtta--gagctta-aga 22615700  T
Q  315 aatcaagaaaccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactaccactaaatcctacagtctatattaaaagtaaaaa 414  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||| |||||  |||||||||||| |||||||| || |  |||| || || |||    
T  22615699 aatcaagaaaccaacctattgttattattacaaactgatatatatagaccatgtaggaaaaactaccactgaatcctacggtttggattacaaatagaaa 22615600  T
Q  415 taacttcctataacttctaaagacactagaaaataa 450  Q
    ||||||| |||||| ||  |||||||| ||||||||    
T  22615599 taacttcttataacgtcctaagacacttgaaaataa 22615564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 22615990 - 22615877
Alignment:
Q  28 ttatgacatcacttaattcattctttaagaacattaatgtcagaattgc-tccaacatcttgtaataacaagttgtctcatgacaacatgatagaaaatt 126  Q
    |||||||||||||| || ||||||| ||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||| |    
T  22615990 ttatgacatcacttgatgcattcttgaagaacattaatgtcagaattgcatccaacatctattaataacaagttgtctcatgacaacatgatagaaaaat 22615891  T
Q  127 gctcaagtgagcat 140  Q
    |||||||| |||||    
T  22615890 gctcaagttagcat 22615877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 801 - 905
Target Start/End: Original strand, 27614290 - 27614394
Alignment:
Q  801 ttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggtgt 900  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||||||||||||||| ||||| |||||||||||    
T  27614290 ttggtcgaaatccatttgcactttacagcctgtcgaaataacccatctgccttgtcgaaaacataatcatgagttcgaccaaatattttatttttggtgt 27614389  T
Q  901 taaca 905  Q
    |||||    
T  27614390 taaca 27614394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 215 - 450
Target Start/End: Complemental strand, 36561982 - 36561737
Alignment:
Q  215 atattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttttcaga 314  Q
    ||||||||||| ||||||||||||||||| |||||||||||  ||||||||||| ||||| | ||||||||   | || |||| ||   ||||||  ||     
T  36561982 atattaaattggaggaatgtaaagggtggttggaatctgtcaatccatacactcgtgaactcatttgctccgc-gacgggggtgttc--gagttta-agc 36561887  T
Q  315 aatcaagaaaccaacccattgttattattacaaaccgatatatataga--------------ccttgtagagaaaactaccactaaatcctacagtctat 400  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||| |              ||||||||||||||||||||||||||| ||  ||| ||    
T  36561886 aatcaagaaaccaactccttgttattattacaaactgatatatatatatatatatatatataccttgtagagaaaactaccactaaatcatatggtccat 36561787  T
Q  401 attaaaagtaaaaataacttcctataacttctaaagacactagaaaataa 450  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  36561786 attaaaagtagaaataacttcctataacttccaaagacactagaaaataa 36561737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 352 - 449
Target Start/End: Original strand, 24574162 - 24574259
Alignment:
Q  352 atatatatagaccttgtagagaaaactaccactaaatcctacagtctatattaaaagtaaaaataacttcctataacttctaaagacactagaaaata 449  Q
    |||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  24574162 atatatatagaccttgtagagaaaactaccactaaatattacggtctatattaaaagtagaaataacttcctataacttcctaagacactagaaaata 24574259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 801 - 903
Target Start/End: Original strand, 19259323 - 19259425
Alignment:
Q  801 ttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggtgt 900  Q
    ||||||||||||  |||||||||||| |||||||||||||| |||||| |||| |||||||||||||||||||||||| ||| |||| ||||||||||||    
T  19259323 ttggtcgaaatcgctttgcactttgcggcatgtcgaaataacccatctgccttgtcgaaaacataatcatgagttcgatcaaatattacatttttggtgt 19259422  T
Q  901 taa 903  Q
    |||    
T  19259423 taa 19259425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 801 - 905
Target Start/End: Original strand, 11105471 - 11105575
Alignment:
Q  801 ttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggtgt 900  Q
    ||||||||||||| |||||||||||||||||||||||||||  ||||| |||| ||||||| |||||||||| ||||||||| |||||||||||| || |    
T  11105471 ttggtcgaaatccctttgcactttgcagcatgtcgaaataactcatctgccttgtcgaaaagataatcatgatttcgaccaaatatttcattttttgtat 11105570  T
Q  901 taaca 905  Q
    |||||    
T  11105571 taaca 11105575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 373 - 464
Target Start/End: Complemental strand, 10374746 - 10374655
Alignment:
Q  373 aaaactaccactaaatcctacagtctatattaaaagtaaaaataacttcctataac-ttctaaagacactagaaaataatcttcaaagcactt 464  Q
    ||||||||||||||||||||  |||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||    
T  10374746 aaaactaccactaaatcctaaggtctatattaaaagtagaaataacttcctataaccttctaa-gacactagaaaataatcttcaatgcactt 10374655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 801 - 901
Target Start/End: Complemental strand, 10377103 - 10377003
Alignment:
Q  801 ttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggtgt 900  Q
    ||||||||||||||||||||||||||||| |||||||||||  ||||| |||||||||  | | |||||||| ||||||||| |||||||||||||||||    
T  10377103 ttggtcgaaatccatttgcactttgcagcctgtcgaaataactcatctgccttatcgacgatagaatcatgaattcgaccaaatatttcatttttggtgt 10377004  T
Q  901 t 901  Q
    |    
T  10377003 t 10377003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 801 - 907
Target Start/End: Complemental strand, 10374560 - 10374454
Alignment:
Q  801 ttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggtgt 900  Q
    |||||||||||  |||||||||||||||| ||||||||||| |||| | |||||||||  | | |||||||| ||||||||| |||||||||||||||||    
T  10374560 ttggtcgaaatttatttgcactttgcagcctgtcgaaataacccatttgccttatcgacgatagaatcatgaattcgaccaaatatttcatttttggtgt 10374461  T
Q  901 taacact 907  Q
    |||||||    
T  10374460 taacact 10374454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 210 - 422
Target Start/End: Original strand, 19258961 - 19259164
Alignment:
Q  210 cattgatattaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctc-ccatggcgtgggtattattgagtt 308  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |  ||||||||||||||||||| | |||||    |||||  ||   | |||   |    
T  19258961 cattgatattaaattgcaggaatgtaaagggtggttggaatctgccaatccatacactcatgaacccatatgctctttgtggcggcgggggtgttggagt 19259060  T
Q  309 ttcagaaatcaagaaaccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactaccactaaatcctacagtctatattaaaag 408  Q
    |||||||||||||||||||||||||||| ||||||||        |||||  |||||||||||||||||||||  |||||| ||| |  | |||||||||    
T  19259061 ttcagaaatcaagaaaccaacccattgtaattattac--------atataacgaccttgtagagaaaactaccggtaaatcatacgg--tttattaaaag 19259150  T
Q  409 taaaaataacttcc 422  Q
    || |||||||||||    
T  19259151 tagaaataacttcc 19259164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 801 - 905
Target Start/End: Complemental strand, 36558637 - 36558536
Alignment:
Q  801 ttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggtgt 900  Q
    ||||||||||||| ||||||||||||| ||||| ||||||| | |||| |||| ||||   ||||||||||||||||||||| |||||||| ||||||||    
T  36558637 ttggtcgaaatccctttgcactttgcaacatgttgaaataaccaatctgccttgtcga---cataatcatgagttcgaccaaatatttcatgtttggtgt 36558541  T
Q  901 taaca 905  Q
    |||||    
T  36558540 taaca 36558536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 801 - 905
Target Start/End: Original strand, 24574397 - 24574501
Alignment:
Q  801 ttggtcgaaatccatttgcactttgcagcatgtcgaaataatccatctaccttatcgaaaacataatcatgagttcgaccaactatttcatttttggtgt 900  Q
    |||||| ||||| |||||||||||| ||| | |||||||||  ||| | |||| |||||||||||||||| ||||||||||| ||||| |||||||||||    
T  24574397 ttggtcaaaatctatttgcactttgtagcctatcgaaataacacatatgccttgtcgaaaacataatcattagttcgaccaaatattttatttttggtgt 24574496  T
Q  901 taaca 905  Q
    |||||    
T  24574497 taaca 24574501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 36562203 - 36562054
Alignment:
Q  10 tcgttcaaacctcgcggtttatgacatcacttaattcattctttaagaaca---------------ttaatgtcagaattgc-tccaacatcttgtaata 93  Q
    |||||||| ||||||||||||||| ||||||| || |||||||||||||||               ||| |||||||||||| ||||||||||| |||||    
T  36562203 tcgttcaagcctcgcggtttatgatatcacttcatgcattctttaagaacaaaattattgttctttttattgtcagaattgcatccaacatcttttaata 36562104  T
Q  94 acaagttgtctcatgacaacatgatagaaaattgctcaagtgagcatgtt 143  Q
    |||| ||||||||||||||  | |||||||| ||||||||||||||||||    
T  36562103 acaaattgtctcatgacaaagtaatagaaaaatgctcaagtgagcatgtt 36562054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 37509835 - 37509898
Alignment:
Q  77 tccaacatcttgtaataacaagttgtctcatgacaacatgatagaaaattgctcaagtgagcat 140  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||||| | |||||||||||||    
T  37509835 tccaacaacttttaataacaagttgtctcatgacaacataatagaaaaatactcaagtgagcat 37509898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 8e-36; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 325 - 450
Target Start/End: Complemental strand, 241222 - 241097
Alignment:
Q  325 ccaacccattgttattattacaaaccgatatatatagaccttgtagagaaaactaccactaaatcctacagtctatattaaaagtaaaaataacttccta 424  Q
    |||||||  |||| ||||||||||| ||||||||||||||||||||  ||||||| ||||||||| ||||||||| |||||||||| |||||||||||||    
T  241222 ccaaccctctgttcttattacaaactgatatatatagaccttgtaggaaaaactagcactaaatcatacagtctacattaaaagtagaaataacttccta 241123  T
Q  425 taacttctaaagacactagaaaataa 450  Q
    |||||||  |||||||||||||||||    
T  241122 taacttcctaagacactagaaaataa 241097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 909 - 993
Target Start/End: Complemental strand, 14843856 - 14843772
Alignment:
Q  909 tcataccaaaagtaagtagacactccattccctaccctctttgaaacccgctcctcaaaccaactctcatcatcttcacccatcc 993  Q
    ||||||||||||||||||||||| ||||| ||||||||  | |||||||||||| ||||||||||| | ||||| ||||||||||    
T  14843856 tcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcc 14843772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 241495 - 241414
Alignment:
Q  60 attaatgtcagaattgctcc-aacatcttgtaataacaagttgtctcatgacaacatgatagaaaattgctcaagtgagcat 140  Q
    |||||||| |||||||| || |||||||| ||||||||||||||||||||||||||| ||| |||| | |||||||||||||    
T  241495 attaatgttagaattgcacccaacatcttttaataacaagttgtctcatgacaacataataaaaaaatactcaagtgagcat 241414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 71; Significance: 1e-31; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 217 - 367
Target Start/End: Complemental strand, 198122 - 197972
Alignment:
Q  217 attaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttttcagaaa 316  Q
    ||||||||| |||||   ||| ||||| |||||||||||  || || || || |||||||||||||| ||||||||||||| |||  |||||||||||||    
T  198122 attaaattgaaggaaataaaatggtggctggaatctgtctatctatccattcctgaacccgtttgctaccatggcgtgggtgttacagagttttcagaaa 198023  T
Q  317 tcaagaaaccaacccattgttattattacaaaccgatatatatagaccttg 367  Q
    ||||||||||||||| ||||| |||||||||||  ||||||||||||||||    
T  198022 tcaagaaaccaaccctttgttcttattacaaactaatatatatagaccttg 197972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 217 - 360
Target Start/End: Complemental strand, 198709 - 198566
Alignment:
Q  217 attaaattgcaggaatgtaaagggtggatggaatctgtcgctccatacactcatgaacccgtttgctcccatggcgtgggtattattgagttttcagaaa 316  Q
    ||||||||| |||||   ||| ||||| |||||||||||  || || ||||| ||||||||||||||| ||||| |||||| |||   || ||| |||||    
T  198709 attaaattgaaggaaataaaatggtggctggaatctgtcaatctatccactcctgaacccgtttgctctcatggtgtgggtgttacatagattttagaaa 198610  T
Q  317 tcaagaaaccaacccattgttattattacaaaccgatatatata 360  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||    
T  198609 tcaagaaaccaaccctttgttcttattacaaactgatatatata 198566  T

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Target: scaffold0043 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 909 - 993
Target Start/End: Complemental strand, 34328 - 34244
Alignment:
Q  909 tcataccaaaagtaagtagacactccattccctaccctctttgaaacccgctcctcaaaccaactctcatcatcttcacccatcc 993  Q
    ||||||||||||||||||||||| ||||| ||||  ||  | |||||||||||| ||||||||||| | ||||| ||||||||||    
T  34328 tcataccaaaagtaagtagacacgccattacctattcttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcc 34244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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