View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4616-Insertion-5 (Length: 617)
Name: NF4616-Insertion-5
Description: NF4616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4616-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 7 - 420
Target Start/End: Complemental strand, 39673061 - 39672648
Alignment:
| Q |
7 |
actagagatttggaggttgagaagaaagagttgctaagatgagatgcaaaacaagagnnnnnnnntcgtcaaatacatcaattctcgtagtggtannnnn |
106 |
Q |
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| T |
39673061 |
actagagatttggaggttgagaagaaagagttgctaagatgagatgcaaaacaagagaaaaaaaatcgtcaaatacatcaattctcgtagtggtatttta |
39672962 |
T |
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| Q |
107 |
nnagggactttccagtttccacatcacaacatagcataatctcatatgtccgaggtttataaaatcaacttcaaaagagtttatctatattctatatgca |
206 |
Q |
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| T |
39672961 |
ttagggactttccagtttccacatcacaacatagcataatctcatatgtccgaggtttataaaatcaacttcaaaagagtttatctatattctatatgca |
39672862 |
T |
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| Q |
207 |
agcatataatgacatctcactttcactttattttatcattgtaagtttgtaacagttattcgtaataaagtatgaatatctttagtttcatatacatgat |
306 |
Q |
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| T |
39672861 |
agcatataatgacatctcactttcactttaatttatcattgtaagtttgtaacagttattcgtaataaagtatgaatatctttagtttcatatacataat |
39672762 |
T |
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| Q |
307 |
tagtgccgatgaagtaaataacctgaccccacaaataaacaccaatattgtccaaaatctatggtaccgataaagatatgttataatgggattaaataat |
406 |
Q |
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| T |
39672761 |
tagtgctgatgaagtaaataacctgaccccacaaataaacaccaatattgtccaaaatctatggtaccgataaagatatgttataatgggattaaataat |
39672662 |
T |
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| Q |
407 |
ctatgaacgtcatt |
420 |
Q |
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| T |
39672661 |
ctatgaacgtcatt |
39672648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 534 - 612
Target Start/End: Complemental strand, 39672536 - 39672458
Alignment:
| Q |
534 |
ggcacaatatatcattaaaaatgtctcttcccaccgtaaaggtgtcctatcggtgtcagagatctatcagattgaaaaa |
612 |
Q |
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| T |
39672536 |
ggcacaatatatcattaaaaatgtctcttcccaccgtaaaggtgtcctatcggtgtcagagatctatcagattgaaaaa |
39672458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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