View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4616-Insertion-8 (Length: 150)

Name: NF4616-Insertion-8
Description: NF4616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4616-Insertion-8
NF4616-Insertion-8
[»] chr3 (1 HSPs)
chr3 (8-150)||(21121676-21121818)
[»] chr2 (5 HSPs)
chr2 (14-67)||(3389319-3389372)
chr2 (11-68)||(30977557-30977614)
chr2 (8-64)||(31606281-31606337)
chr2 (27-66)||(27494919-27494958)
chr2 (20-67)||(26855260-26855307)
[»] scaffold0533 (1 HSPs)
scaffold0533 (23-75)||(3184-3235)
[»] chr7 (5 HSPs)
chr7 (20-64)||(23719059-23719103)
chr7 (8-66)||(19531812-19531870)
chr7 (27-65)||(36478662-36478700)
chr7 (23-66)||(48030282-48030325)
chr7 (20-66)||(13141445-13141491)
[»] chr4 (2 HSPs)
chr4 (20-59)||(9791966-9792005)
chr4 (27-66)||(20823451-20823490)
[»] chr1 (2 HSPs)
chr1 (23-66)||(2752448-2752491)
chr1 (31-76)||(38639311-38639356)
[»] chr6 (5 HSPs)
chr6 (20-67)||(34631303-34631350)
chr6 (85-137)||(21813917-21813969)
chr6 (22-61)||(6734237-6734276)
chr6 (35-66)||(7640678-7640709)
chr6 (27-66)||(32250891-32250930)
[»] scaffold0285 (1 HSPs)
scaffold0285 (20-61)||(13187-13228)
[»] chr5 (3 HSPs)
chr5 (8-61)||(14811236-14811289)
chr5 (8-61)||(18615744-18615797)
chr5 (81-137)||(4524057-4524113)
[»] chr8 (1 HSPs)
chr8 (16-55)||(44071178-44071217)


Alignment Details
Target: chr3 (Bit Score: 143; Significance: 2e-75; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 21121818 - 21121676
Alignment:
Q  8 cttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctatacaaaaatgaccgacaatttagtaatattcacacacacatga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21121818 cttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctatacaaaaatgaccgacaatttagtaatattcacacacacatga 21121719  T
Q  108 gacaaatttattactccgacattttttcttttaacattcgtga 150  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21121718 gacaaatttattactccgacattttttcttttaacattcgtga 21121676  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 3389372 - 3389319
Alignment:
Q  14 attaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctatac 67  Q
    ||||| |||||| ||||||||||||||||||| |||||||||||||||||||||    
T  3389372 attactatcaatgtatcttgaaatatgaaaaactaacattaaatatatctatac 3389319  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 30977557 - 30977614
Alignment:
Q  11 attattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctataca 68  Q
    |||| ||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||    
T  30977557 attaatactatcaatttatcttgaaatacgaaaagttaatattaaatatatctataca 30977614  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 31606337 - 31606281
Alignment:
Q  8 cttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatcta 64  Q
    ||||||| ||| ||||||||||| |||||| ||||| ||||||||||||||||||||    
T  31606337 cttattaatactatcaatttatcatgaaatgtgaaatattaacattaaatatatcta 31606281  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 27494958 - 27494919
Alignment:
Q  27 tatcttgaaatatgaaaaattaacattaaatatatctata 66  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  27494958 tatcttgaaatatgaaaaattaacattaaatatatttata 27494919  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 26855260 - 26855307
Alignment:
Q  20 atcaatttatcttgaaatatgaaaaattaacattaaatatatctatac 67  Q
    |||||| ||||||| |||||||||| |||||||| |||||||||||||    
T  26855260 atcaatgtatcttggaatatgaaaagttaacattgaatatatctatac 26855307  T

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Target: scaffold0533 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 3235 - 3184
Alignment:
Q  23 aatttatcttgaaatatgaaaaattaacattaaatatatctatacaaaaatga 75  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||| ||||||    
T  3235 aatttatcttgaaatatgaaaaa-taacattaaatatatttatacacaaatga 3184  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 23719059 - 23719103
Alignment:
Q  20 atcaatttatcttgaaatatgaaaaattaacattaaatatatcta 64  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||    
T  23719059 atcaatatatattgaaatatgaaaaattaacattaaatatatcta 23719103  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 19531812 - 19531870
Alignment:
Q  8 cttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatatctata 66  Q
    ||||||| |||||||||| ||||||||||||||||||  || ||||||||| |||||||    
T  19531812 cttattagtaccatcaatgtatcttgaaatatgaaaagatagcattaaatacatctata 19531870  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 36478700 - 36478662
Alignment:
Q  27 tatcttgaaatatgaaaaattaacattaaatatatctat 65  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  36478700 tatcttgaaatatgaaaagttaacattaaatatatctat 36478662  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 48030282 - 48030325
Alignment:
Q  23 aatttatcttgaaatatgaaaaattaacattaaatatatctata 66  Q
    ||||||||||| |||||||||| |||||||| ||||||||||||    
T  48030282 aatttatcttggaatatgaaaagttaacattgaatatatctata 48030325  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 13141491 - 13141445
Alignment:
Q  20 atcaatttatcttgaaatatgaaaaattaacattaaatatatctata 66  Q
    |||||| || ||||||||||||||| |||||||||||||| ||||||    
T  13141491 atcaatataccttgaaatatgaaaagttaacattaaatatctctata 13141445  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 9791966 - 9792005
Alignment:
Q  20 atcaatttatcttgaaatatgaaaaattaacattaaatat 59  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  9791966 atcaatatatcttgaaatatgaaaaattaacattaaatat 9792005  T

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Target: chr4; HSP #2
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 20823451 - 20823490
Alignment:
Q  27 tatcttgaaatatgaaaaattaacattaaatatatctata 66  Q
    ||||||||||||| |||| |||||||||||| ||||||||    
T  20823451 tatcttgaaatataaaaacttaacattaaatctatctata 20823490  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 2752491 - 2752448
Alignment:
Q  23 aatttatcttgaaatatgaaaaattaacattaaatatatctata 66  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||    
T  2752491 aatttatcttgaaatataaaaaattaacattgaatatatctata 2752448  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 38639356 - 38639311
Alignment:
Q  31 ttgaaatatgaaaaattaacattaaatatatctatacaaaaatgac 76  Q
    |||| ||||||||| |||||||||||| |||||||||| |||||||    
T  38639356 ttgagatatgaaaagttaacattaaatgtatctatacacaaatgac 38639311  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 34631303 - 34631350
Alignment:
Q  20 atcaatttatcttgaaatatgaaaaattaacattaaatatatctatac 67  Q
    |||||| ||||||| |||||||||| |||||||| |||||||||||||    
T  34631303 atcaatgtatcttggaatatgaaaacttaacattgaatatatctatac 34631350  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 21813969 - 21813917
Alignment:
Q  85 tagtaatattcacacacacatgagacaaatttattactccgacattttttctt 137  Q
    |||||||| |||||||||  |||||||||||||||||||| |||  |||||||    
T  21813969 tagtaataatcacacacatttgagacaaatttattactccaacaacttttctt 21813917  T

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Target: chr6; HSP #3
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 6734276 - 6734237
Alignment:
Q  22 caatttatcttgaaatatgaaaaattaacattaaatatat 61  Q
    ||||||||||| | ||||||||| ||||||||||||||||    
T  6734276 caatttatcttaatatatgaaaagttaacattaaatatat 6734237  T

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Target: chr6; HSP #4
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 66
Target Start/End: Complemental strand, 7640709 - 7640678
Alignment:
Q  35 aatatgaaaaattaacattaaatatatctata 66  Q
    ||||||||||||||||||| ||||||||||||    
T  7640709 aatatgaaaaattaacattcaatatatctata 7640678  T

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Target: chr6; HSP #5
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 32250930 - 32250891
Alignment:
Q  27 tatcttgaaatatgaaaaattaacattaaatatatctata 66  Q
    ||||||| |||||||||| |||||||||||||||| ||||    
T  32250930 tatcttggaatatgaaaagttaacattaaatatatttata 32250891  T

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Target: scaffold0285 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 13187 - 13228
Alignment:
Q  20 atcaatttatcttgaaatatgaaaaattaacattaaatatat 61  Q
    |||||| |||||||||||||||||| |||||||| |||||||    
T  13187 atcaatgtatcttgaaatatgaaaagttaacattgaatatat 13228  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 14811236 - 14811289
Alignment:
Q  8 cttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatat 61  Q
    ||||||| ||| |||||||| |||||| |||||||||||||  |||||||||||    
T  14811236 cttattaatactatcaatttgtcttgatatatgaaaaattattattaaatatat 14811289  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 18615797 - 18615744
Alignment:
Q  8 cttattattaccatcaatttatcttgaaatatgaaaaattaacattaaatatat 61  Q
    ||||||| ||| |||||||| ||| || ||||||||| ||||||||||||||||    
T  18615797 cttattaatactatcaatttgtctcgagatatgaaaagttaacattaaatatat 18615744  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 4524057 - 4524113
Alignment:
Q  81 aatttagtaatattcacacacacatgagacaaatttattactccgacattttttctt 137  Q
    |||||||||||| |||||||||  | |||||||||||||||||| |||  |||||||    
T  4524057 aatttagtaatagtcacacacatttcagacaaatttattactccaacaacttttctt 4524113  T

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Target: chr8 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 44071178 - 44071217
Alignment:
Q  16 taccatcaatttatcttgaaatatgaaaaattaacattaa 55  Q
    ||||||||||| ||||||||||||  ||||||||||||||    
T  44071178 taccatcaattcatcttgaaatatataaaattaacattaa 44071217  T

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