View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4616-Insertion-9 (Length: 92)
Name: NF4616-Insertion-9
Description: NF4616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4616-Insertion-9 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 1e-41; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-41
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 52698756 - 52698671
Alignment:
| Q |
7 |
accaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaattaaagaaagagaatttcatttggacttcttt |
92 |
Q |
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| T |
52698756 |
accaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaattaaagaaagagaatttcatttggacttcttt |
52698671 |
T |
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Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 52712563 - 52712490
Alignment:
| Q |
19 |
attccaagaagggcacccatgttgatggcaaagtaaaaccaattaaagaaagagaatttcatttggacttcttt |
92 |
Q |
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| T |
52712563 |
attccaagaagagcacccatgttgatagcaaagaaaaaccaattaaagaaagcgtatttcttttggacttcttt |
52712490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 52721384 - 52721311
Alignment:
| Q |
19 |
attccaagaagggcacccatgttgatggcaaagtaaaaccaattaaagaaagagaatttcatttggacttcttt |
92 |
Q |
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| T |
52721384 |
attccaagaagagaacccatgttgatagcaaagaaaaaccaattaaagaaagcgtatttctgttggacttcttt |
52721311 |
T |
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