View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4616_high_1 (Length: 341)
Name: NF4616_high_1
Description: NF4616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4616_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 47713003 - 47712686
Alignment:
| Q |
1 |
attgtattggctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctgatcatttttctgattgtttaaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47713003 |
attgtattggctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctgatcattttgctgattgtttaaaga |
47712904 |
T |
|
| Q |
101 |
aagatattgagtttttgaaatgtgggtcgtccacaaatattagtcttgctgcgaaatggtgtccttcggttgactcttcatttgatagggcgacattgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47712903 |
aagatattgagtttttgaaatgtgggtcgtccacaaatattagtcttgctgcgaaatggtgtccttcggttgactcttcatttgatagggcgacattgtt |
47712804 |
T |
|
| Q |
201 |
gtgtgagagtatcgcaaagaggatttttcctagggaggagtatgaaggtgtggaggaggctcattatgcttatagggttcgtgatcgtttgaggaaggat |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47712803 |
gtgtgagagtatcgcgaagaggatttttcctagggaggagtatgaaggtgtggaggaggcgcattatgcttatagggttcgtgatcgtttgaggaaggat |
47712704 |
T |
|
| Q |
301 |
gtgttggtgccgttgagg |
318 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
47712703 |
gtgttggtgccattgagg |
47712686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 7 - 318
Target Start/End: Original strand, 19785489 - 19785800
Alignment:
| Q |
7 |
ttggctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctgatcatttttctgattgtttaaagaaagata |
106 |
Q |
| |
|
|||||||||||||||||||| || || | | |||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| ||||| ||| |
|
|
| T |
19785489 |
ttggctaagaagcttgttgatcgttacactaccgaccctcattttaagtttcttcatgattctatctctgatcattttgctgattgtttgaagaaggatc |
19785588 |
T |
|
| Q |
107 |
ttgagtttttgaaatgtgggtcgtccacaaatattagtcttgctgcgaaatggtgtccttcggttgactcttcatttgatagggcgacattgttgtgtga |
206 |
Q |
| |
|
|| |||||||||||| ||||| | ||| || || || |||||||| |||||||| ||||| ||||||||||| |||||| | |||| | ||||||| |
|
|
| T |
19785589 |
ttcagtttttgaaatctgggttgcccaataaaatcagccttgctgctaaatggtgcccttctgttgactcttcctttgatcgatcgactcttctgtgtga |
19785688 |
T |
|
| Q |
207 |
gagtatcgcaaagaggatttttcctagggaggagtatgaaggtgtggaggaggctcattatgcttatagggttcgtgatcgtttgaggaaggatgtgttg |
306 |
Q |
| |
|
|||||| ||||||||||| || ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19785689 |
gagtattgcaaagaggatcttccctcgggaggaatatgaaggtgtggaggaggcacattatgcttatagggttcgtgatcgtttgaggaaagatgtgttg |
19785788 |
T |
|
| Q |
307 |
gtgccgttgagg |
318 |
Q |
| |
|
|||||||||||| |
|
|
| T |
19785789 |
gtgccgttgagg |
19785800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 19796104 - 19795787
Alignment:
| Q |
1 |
attgtattggctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctgatcatttttctgattgtttaaaga |
100 |
Q |
| |
|
|||| ||| ||||||||||||||||| || |||| | || || |||||||||||||||| |||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
19796104 |
attgcattagctaagaagcttgttgatcgttatactaccgatcccaattttaagtttcttcacgattgtatctctgatcatttcgctgattgtttgaaga |
19796005 |
T |
|
| Q |
101 |
aagatattgagtttttgaaatgtgggtcgtccacaaatattagtcttgctgcgaaatggtgtccttcggttgactcttcatttgatagggcgacattgtt |
200 |
Q |
| |
|
| ||| | ||||||||||||| |||||| ||| || || ||||||||||| |||||||| ||||| ||||||||||| |||||| || | || | | |
|
|
| T |
19796004 |
aggatctcgagtttttgaaatccgggtcgcccaataaaatcagtcttgctgctaaatggtgcccttctgttgactcttcctttgatcggtcaactcttct |
19795905 |
T |
|
| Q |
201 |
gtgtgagagtatcgcaaagaggatttttcctagggaggagtatgaaggtgtggaggaggctcattatgcttatagggttcgtgatcgtttgaggaaggat |
300 |
Q |
| |
|
|||||||| || || |||| ||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
19795904 |
gtgtgagaccattgccaagaagatcttccctagggaggagtatgaaggtgtggaggaggcacattatgcttatagggttcgtgatcggttgaggaaagat |
19795805 |
T |
|
| Q |
301 |
gtgttggtgccgttgagg |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19795804 |
gtgttggtgccgttgagg |
19795787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 7 - 318
Target Start/End: Complemental strand, 15835405 - 15835094
Alignment:
| Q |
7 |
ttggctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctgatcatttttctgattgtttaaagaaagata |
106 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||| |||||||||| |||||| ||||||| ||| |||||||| |||||||||| ||||| ||| |
|
|
| T |
15835405 |
ttggctaagaagcttgttgatcgatacaatcgtgaccctgattttaagttccttcataattgtatctctcatcattttgctgattgtttgaagaaggatc |
15835306 |
T |
|
| Q |
107 |
ttgagtttttgaaatgtgggtcgtccacaaatattagtcttgctgcgaaatggtgtccttcggttgactcttcatttgatagggcgacattgttgtgtga |
206 |
Q |
| |
|
||||||||||||||| |||||| ||| ||| || ||||||||||| |||||||| || || || ||||||| |||||| || | || | ||||||| |
|
|
| T |
15835305 |
ttgagtttttgaaatctgggtcacccagaaaaatcagtcttgctgctaaatggtgcccctctctttactcttcctttgatcggtcaactcttctgtgtga |
15835206 |
T |
|
| Q |
207 |
gagtatcgcaaagaggatttttcctagggaggagtatgaaggtgtggaggaggctcattatgcttatagggttcgtgatcgtttgaggaaggatgtgttg |
306 |
Q |
| |
|
|| || || |||||||| || ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15835205 |
gaccattgccaagaggatattccctcgggaggaatatgaaggtgtggaggaggcgcattatgcttatagggttcgtgatcgtttgaggaaagatgtgttg |
15835106 |
T |
|
| Q |
307 |
gtgccgttgagg |
318 |
Q |
| |
|
|||||||||||| |
|
|
| T |
15835105 |
gtgccgttgagg |
15835094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University