View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4616_high_2 (Length: 283)
Name: NF4616_high_2
Description: NF4616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4616_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 12 - 265
Target Start/End: Complemental strand, 30652522 - 30652271
Alignment:
| Q |
12 |
tcatcaaagagctaagtacaaacggttacacatttccaaaatccaaatgactacttccttgattttcttctgctttcttctctccgtctctgtcacagcc |
111 |
Q |
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| T |
30652522 |
tcatcaaagagctaagcacaaacggttacacatttccaaaatccaaatgactacttccttgattttcttctgctttcttctctccgtctctgtcacagcc |
30652423 |
T |
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| Q |
112 |
acaggtactcttccagctactctccacnnnnnnnnatgcacatatatatattctttgaaacactgaacatgacactgacacgtaaacacgagtaataaca |
211 |
Q |
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| T |
30652422 |
acaggtactcttctagctactcttcacttttttttatgcac--atatatattctttgaaacagtgaaaatgacactgacacgtaaacactactgataaca |
30652325 |
T |
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| Q |
212 |
gtttgaaaaacataagtgatttaataagattgtttttgaattaggcatcgtttc |
265 |
Q |
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| T |
30652324 |
gtttgaaaaacataagtgatttaataagattgtttttgaatcaggcatcgtttc |
30652271 |
T |
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