View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4616_low_4 (Length: 219)

Name: NF4616_low_4
Description: NF4616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4616_low_4
NF4616_low_4
[»] chr8 (1 HSPs)
chr8 (19-201)||(26901360-26901542)
[»] chr7 (2 HSPs)
chr7 (143-200)||(32910635-32910692)
chr7 (143-200)||(35880146-35880203)
[»] chr2 (2 HSPs)
chr2 (143-200)||(4931585-4931642)
chr2 (145-199)||(37300011-37300065)
[»] chr6 (2 HSPs)
chr6 (143-200)||(2511430-2511487)
chr6 (143-185)||(2511408-2511450)
[»] chr4 (1 HSPs)
chr4 (145-200)||(45121151-45121206)
[»] chr5 (2 HSPs)
chr5 (142-200)||(8610328-8610386)
chr5 (156-200)||(6965342-6965386)
[»] chr3 (2 HSPs)
chr3 (143-183)||(28290454-28290494)
chr3 (143-183)||(28290487-28290527)
[»] chr1 (1 HSPs)
chr1 (141-177)||(40179887-40179923)


Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 26901360 - 26901542
Alignment:
Q  19 caaaggccaaaataaaaagtctatcaggtgtcagttcaacggtaaaaatttgatccagtaatattaacgtataaaatttaaatctcttatgagatgatta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26901360 caaaggccaaaataaaaagtctatcaggtgtcagttcaacggtaaaaatttgatccagtaatattaacgtataaactttaaatctcttatgagatgatta 26901459  T
Q  119 taaaatgatcatgctcctatgtggtcttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacattta 201  Q
    |||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26901460 taaaatgatcatactcctctctggtcttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacattta 26901542  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 32910692 - 32910635
Alignment:
Q  143 tcttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacattt 200  Q
    |||||||||||  ||||||||||||| ||||||||||||||||| || ||||||||||    
T  32910692 tcttaaatataatcaaaaagtcaaatatatttgatttaaatttggaccaaatacattt 32910635  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 35880146 - 35880203
Alignment:
Q  143 tcttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacattt 200  Q
    ||||||||||| ||||||||||||||   ||||||||||||||| || ||||| ||||    
T  35880146 tcttaaatataaacaaaaagtcaaatacgtttgatttaaatttggaccaaatatattt 35880203  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 4931642 - 4931585
Alignment:
Q  143 tcttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacattt 200  Q
    ||||||||||| |||||||||||||||||||||||| |||||| ||  ||||||||||    
T  4931642 tcttaaatataaacaaaaagtcaaatgtatttgattcaaatttaaatcaaatacattt 4931585  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 37300065 - 37300011
Alignment:
Q  145 ttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacatt 199  Q
    ||||||||| | ||||||||||||||||||| || |||||| ||| |||||||||    
T  37300065 ttaaatataaataaaaagtcaaatgtatttggttcaaatttcaactaaatacatt 37300011  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 2511487 - 2511430
Alignment:
Q  143 tcttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacattt 200  Q
    |||||||| || ||||||||||||||||||||||| ||||||| || |||| ||||||    
T  2511487 tcttaaatctaaacaaaaagtcaaatgtatttgatctaaatttaaataaaaaacattt 2511430  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 2511408 - 2511450
Alignment:
Q  143 tcttaaatatatacaaaaagtcaaatgtatttgatttaaattt 185  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||    
T  2511408 tcttaaatatatacaaaaggtcaaatgttttttatttaaattt 2511450  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 45121151 - 45121206
Alignment:
Q  145 ttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacattt 200  Q
    |||||| ||| |||||| | |||||||||||||||||||||| || ||||||||||    
T  45121151 ttaaatctatgcaaaaatttaaatgtatttgatttaaatttggactaaatacattt 45121206  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 8610328 - 8610386
Alignment:
Q  142 gtcttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacattt 200  Q
    |||||||||||| ||||||||||||||| |||| || |||||||  || ||||||||||    
T  8610328 gtcttaaatatacacaaaaagtcaaatggatttaatctaaatttataccaaatacattt 8610386  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 6965342 - 6965386
Alignment:
Q  156 caaaaagtcaaatgtatttgatttaaatttgaacaaaatacattt 200  Q
    ||||||||||||||||||| ||| ||||||| || ||||||||||    
T  6965342 caaaaagtcaaatgtatttaattcaaatttggaccaaatacattt 6965386  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 28290454 - 28290494
Alignment:
Q  143 tcttaaatatatacaaaaagtcaaatgtatttgatttaaat 183  Q
    |||| |||||| |||||||||||||||||| ||||||||||    
T  28290454 tcttgaatataaacaaaaagtcaaatgtatctgatttaaat 28290494  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 28290527 - 28290487
Alignment:
Q  143 tcttaaatatatacaaaaagtcaaatgtatttgatttaaat 183  Q
    ||||||||||| | ||||| |||||||||||||||||||||    
T  28290527 tcttaaatataaataaaaaatcaaatgtatttgatttaaat 28290487  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 40179923 - 40179887
Alignment:
Q  141 ggtcttaaatatatacaaaaagtcaaatgtatttgat 177  Q
    |||||||||||||  ||||||||||||||||||||||    
T  40179923 ggtcttaaatataagcaaaaagtcaaatgtatttgat 40179887  T

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