View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4617-Insertion-1 (Length: 1040)
Name: NF4617-Insertion-1
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4617-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 707; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 62 - 1035
Target Start/End: Original strand, 9435997 - 9436986
Alignment:
| Q |
62 |
gcacgtctattctattacttgtttgt-ttattatatttgcactttgttcatcgtttttgctcttcttgcgatactcagaatta---agagattgatccat |
157 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
9435997 |
gcacgtctattctattacttgttcgtgttattatatttgcactttgttcatcctttttgctcttcttgcgatactcataattaccaagagattgatccat |
9436096 |
T |
|
| Q |
158 |
ccattagtgttttataaggcatattttactatgctatgttgtatgtcttaacaaggtttgaactttatgtccttctattttgaaaattatgggattagga |
257 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9436097 |
ccattagtgttttatatggcatattttactatgctatgttgtatgtcttaacaaggtttgaactttatgtccttctattttgaaaattatgggactagga |
9436196 |
T |
|
| Q |
258 |
caaaacccaacggaaaaacatcgtgcaagaccaacaactccatcgttaaaaaccttactcggaaaagatgagagcagtgcaagaaatcaacatcaaccaa |
357 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||| |
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| T |
9436197 |
aaaaacccaacgaaaaaacattgtgcaagaccaacaactccatcgttaaaaaccttactaggaaaagatgagggcagtgcaagaaatctacatcaaccaa |
9436296 |
T |
|
| Q |
358 |
agataaatccttaaggaaatcaatactacataagnnnnnnnggaagagaaggacacatctatctagtaaagcaaggtgaaacactcttttcatctgacga |
457 |
Q |
| |
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||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9436297 |
agataaatccttaaggaaaccaatactacagaag-aaaaaaggaagagaaggacacatctatctagtaaagcaaggtgaaacacgcttttcatctgacga |
9436395 |
T |
|
| Q |
458 |
agaaaatgctagcttgcctcttgtaaaaggaagcattcctctggtggaaaacnnnnnnnnnctc--agacctttcaaagaacccataatttggtcttaag |
555 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
9436396 |
agaaaatgctagcttgcctcttgtaaaaggaagcattcctctggtggaaaac-aaaaaaaactcatagacctttcaaagaacccataatttggtcttaaa |
9436494 |
T |
|
| Q |
556 |
taagtgaacacgcaaagatttgtgaagtttcaaagatgcatcttcgtctgttatttaaacatctttacctaaattaatacggcttcatctgcttgacaca |
655 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
9436495 |
taagtgaacacgaaaagatttgtgaagtttcaaagatgcatcttcttctgttatttaaacttctttacctaaattaatatggcttcatctgcttgacaca |
9436594 |
T |
|
| Q |
656 |
aacaacgtatcatctggtcatgagtcactcccttacaattcctatacatcatttacttacaaaccccttaatcggtataacgtggtatcgatgttgtgaa |
755 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9436595 |
aacaacgtatcatctggtcatgagtcactcccttacaattcctatacatcatttacttacaaaccccttaatcggtataacgtggtttcgatgttgtgaa |
9436694 |
T |
|
| Q |
756 |
gtataagttcagtgacaagaggatcactgtgaaattagtgca-----taatagggtgtttattaagcgcag-atgtagtgctctgataataaataaggat |
849 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
9436695 |
gtataagttcagtaacaagaggatcactgtgaaattagtgcattgagtaata-ggtgtttattaaacgcagaatgtagtgctctgataataaataaggat |
9436793 |
T |
|
| Q |
850 |
ttaggagttacaattagagtttatatttgaattctcttatagtcatgttcttcttgaagtttattctctc-aatgttatcaatttaactttattcttatt |
948 |
Q |
| |
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||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9436794 |
ttaggagctacaattagagtttatattggaattctcttatagtcatgttcttcttgaaatttattctctcaaatgttatcaatttaactttattcttatt |
9436893 |
T |
|
| Q |
949 |
aattgcaaatcttgagaagcaattc-acacttgtaaacctatcactc-tct-atatctaa--tgattaaac-ttattcatatatttcgtttca |
1035 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| | |||||||| ||||||||||||||||||||| |
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| T |
9436894 |
aattgcaaatcttgagaagcaattcaacacttgtaaacctatcactcttctaatatcttagtggattaaactttattcatatatttcgtttca |
9436986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 9389339 - 9389652
Alignment:
| Q |
11 |
atcagggtaagtttgtacagtcggacagtgtgtcatgtatccattatgct---tgcacgtctattctattacttgtttgt-ttattatatttgcactttg |
106 |
Q |
| |
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|||| ||||||||||||||||||| ||||||| ||||| ||||||||||| |||| ||||||||| ||||| |||||| ||||||||||||||||||| |
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| T |
9389339 |
atcaaggtaagtttgtacagtcggccagtgtgacatgtgtccattatgctgcttgcatgtctattctgttactggtttgtgttattatatttgcactttg |
9389438 |
T |
|
| Q |
107 |
ttcatcgtttttgctcttcttgcgatactcagaatta---agagattgatccatccattagtgttttataaggcatattttactatgctatgttgtatgt |
203 |
Q |
| |
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|||||| | ||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
9389439 |
ttcatccctcttggtcttcttgcgatactcagaattaccaagagattgatccatccattagagttttatatggcatattttactatgctatgttgtatgt |
9389538 |
T |
|
| Q |
204 |
cttaacaaggtttgaactttatgtccttctattttgaaaattatgggattaggacaaaacccaac-ggaaaaacatcgtgcaagaccaacaactccatcg |
302 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| || |
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| T |
9389539 |
cttaacaaggtttgaactttatgtccttctattttgaaaattatgggactaggacaaaacccaacaaaaaaaacattgtgcaagaccaacaactccctca |
9389638 |
T |
|
| Q |
303 |
ttaaaaaccttact |
316 |
Q |
| |
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|||| || |||||| |
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| T |
9389639 |
ttaataatcttact |
9389652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 435 - 593
Target Start/End: Original strand, 9389774 - 9389933
Alignment:
| Q |
435 |
gaaacactcttttcatctgacgaagaaaatgctagcttgcctcttgt-aaaaggaagcattcctctggtggaaaacnnnnnnnnnctcagacctttcaaa |
533 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||| || | |||| ||||||| |
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| T |
9389774 |
gaaacactcttttcatccgacgaagaaaatgctagcttgcctctagtaaaaaggaagcattcctctggtggaacacaaaaaagctcatagacttttcaaa |
9389873 |
T |
|
| Q |
534 |
gaacccataatttggtcttaagtaagtgaacacgcaaagatttgtgaagtttcaaagatg |
593 |
Q |
| |
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||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||| |
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| T |
9389874 |
gaacccataatttggtcttaaaaaagtgaacactcgaagatttgtgaagtttcaaagatg |
9389933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 9389705 - 9389752
Alignment:
| Q |
336 |
gcaagaaatcaacatcaaccaaagataaatccttaaggaaatcaatac |
383 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
9389705 |
gcaagaaatcaacatcaaccaaagataaatccttaagcaaaccaatac |
9389752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 647 - 703
Target Start/End: Original strand, 9389950 - 9390006
Alignment:
| Q |
647 |
cttgacacaaacaacgtatcatctggtcatgagtcactcccttacaattcctataca |
703 |
Q |
| |
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||||||||||| |||| |||||||| |||||| |||||| |||||||||| |||||| |
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| T |
9389950 |
cttgacacaaaaaacgcatcatctgatcatgaatcactctcttacaattcatataca |
9390006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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