View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4617-Insertion-2 (Length: 893)
Name: NF4617-Insertion-2
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4617-Insertion-2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 761; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 761; E-Value: 0
Query Start/End: Original strand, 7 - 893
Target Start/End: Complemental strand, 44013730 - 44012843
Alignment:
| Q |
7 |
aattttgtctcttgttaaattgcagggaattagctatgcaaagcttgcaaacttgcctcctattattggactgtgtaagtatttaatttacttccagttt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44013730 |
aattttgtctcttgttaaattgcagggaattagctatgcaaagcttgcaaacttgcctcctattattggactgtgtaagtatttaatttacttccagttt |
44013631 |
T |
|
| Q |
107 |
catgattcctggcattgagtaaatgttattaattatgatggaacatttgaatatggcacagattcaagttttgtgccatcgttgatatatgctctgcttg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
44013630 |
catgattcctggcattgagtaaatgttattaattatgatggaacatttgaatatgtcacagattcaagttttgtgccaccattgatatatgctctgcttg |
44013531 |
T |
|
| Q |
207 |
gaagttcaagacgtgttggtgttggaccagtttcaattgcatctttggttatgggatcaatgttgagtgaaactgtttctttcactcaaaatcctactct |
306 |
Q |
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| T |
44013530 |
gaagttcaagacatgttggtgttggaccagtttcaattgcatctttggttatgggatcaatgttgagtgaaactgtttctttcactcaaaatcctactct |
44013431 |
T |
|
| Q |
307 |
ttatcttcaattggctttcactgccacttttgttgctggtttattccaagcttctcttggtatactaaggtattcaattaaataaaatcattcatcttct |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44013430 |
ttatcttcaattggctttcactgccacttttgttgctggtttattccaagcttctcttggtatactaaggtattcaattaaataaaatcatttatcttct |
44013331 |
T |
|
| Q |
407 |
gatttttattttattttacctttgcatgtgaaattagttagttaaaaattagcatagtaagattggtaaaagggtcacataagtatggtcggtcagatgg |
506 |
Q |
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| T |
44013330 |
gattttaattttattttacctgtgcatgtgaaattagttagttaaaaattagcatagtaagattggtaaaaggatcacataagtatggtcggtcagatgg |
44013231 |
T |
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| Q |
507 |
taaaagaccacaaaaatatttgataagttaggactcggcaagtg-tttgtgaatttcactactaaactcttctgnnnnnnnnnnnnnnnnnnnnncttgt |
605 |
Q |
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| T |
44013230 |
taaaaaaccgcagaaacatttgataagttaggactcggcaagtgttttgtgaatttcactactagactcttctgaaaaggaaaaaaaatcaaaaacttgt |
44013131 |
T |
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| Q |
606 |
tactagtactttatttaataataagacaattctagtcaacttgaaatttgagaatttatttatggttatttattgaaggacattttattagttccctatg |
705 |
Q |
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| T |
44013130 |
tactagtactttatttaataataagacaattctagtcaacttgaaatttgagaatttatttatggttatttattgaaggacattttattagttccctatg |
44013031 |
T |
|
| Q |
706 |
ttttgtggatgatgaaataatcttttgaatttgtgcatgcaggctaggctttgtgattgattttctatcaaaagcaaccctggtcggttttatggccggt |
805 |
Q |
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| T |
44013030 |
ttttgtgaatgatgaaataatcttttgaatttgtgcatgcaggctaggctttgtgattgattttctatcaaaagcaaccctggtcggttttatggccggt |
44012931 |
T |
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| Q |
806 |
gctgctatcattgtgtcattgcagcaattgaaagggttacttggaattgtgcactttactaacaagatgcaaattattcctgtattgg |
893 |
Q |
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| T |
44012930 |
gctgctatcattgtgtcattgcagcaattgaaagggttacttggaattgtgcactttactaacaagatgcaaattattcctgtattgg |
44012843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 3e-50; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 165 - 378
Target Start/End: Original strand, 3173519 - 3173732
Alignment:
| Q |
165 |
cagattcaagttttgtgccatcgttgatatatgctctgcttggaagttcaagacgtgttggtgttggaccagtttcaattgcatctttggttatgggatc |
264 |
Q |
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||||||||||||||||||| | ||||||||| | | ||||||||||| |||| | |||||||||| || |||||||||||||| |||||||||||||| |
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| T |
3173519 |
cagattcaagttttgtgcctgctttgatatattcagtacttggaagttctagacatcttggtgttggtcctgtttcaattgcatcattggttatgggatc |
3173618 |
T |
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| Q |
265 |
aatgttgagtgaaactgtttctttcactcaaaatcctactctttatcttcaattggctttcactgccacttttgttgctggtttattccaagcttctctt |
364 |
Q |
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|||||| ||||||| |||||||| | |||| |||| | ||| |||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
3173619 |
aatgttaagtgaaagtgtttcttatagtcaagatccaattctctatcttaaattggctttcactgccactttctttgctggtttattccaatcttctctt |
3173718 |
T |
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| Q |
365 |
ggtatactaaggta |
378 |
Q |
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| T |
3173719 |
ggtgtattaaggta |
3173732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 745 - 879
Target Start/End: Original strand, 3174142 - 3174276
Alignment:
| Q |
745 |
caggctaggctttgtgattgattttctatcaaaagcaaccctggtcggttttatggccggtgctgctatcattgtgtcattgcagcaattgaaagggtta |
844 |
Q |
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|||| |||||||||||||||||||||||||||| ||||| |||| ||||| ||||| ||||| || |||||||||||| | || ||| | ||||||||| |
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| T |
3174142 |
caggttaggctttgtgattgattttctatcaaaggcaacattggtaggtttcatggctggtgcagcaatcattgtgtcactacaacaactcaaagggtta |
3174241 |
T |
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| Q |
845 |
cttggaattgtgcactttactaacaagatgcaaat |
879 |
Q |
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| T |
3174242 |
ctaggaatagttcatttcacaagcaagatgcaaat |
3174276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 3173377 - 3173440
Alignment:
| Q |
26 |
ttgcagggaattagctatgcaaagcttgcaaacttgcctcctattattggactgtgtaagtatt |
89 |
Q |
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||||||||||| || ||||| ||||||||||||||||| || ||||||||| ||||| |||||| |
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| T |
3173377 |
ttgcagggaatcagttatgccaagcttgcaaacttgccaccaattattggattgtgttagtatt |
3173440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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