View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4617-Insertion-3 (Length: 598)
Name: NF4617-Insertion-3
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4617-Insertion-3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 8 - 598
Target Start/End: Original strand, 25172221 - 25172811
Alignment:
| Q |
8 |
ggagtatcatcaggtccttcgtctcttgaagaatacgagcttacatcagctacatcttcatctatttgtcttaaagaaataggtgaaacaacctttgaca |
107 |
Q |
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| T |
25172221 |
ggagtatcatcaggtccttcgtctcttgaagaatacgagcttacatcagccacatcttcatctatttgtcttaaagaaataggtgaaacaacctttgaca |
25172320 |
T |
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| Q |
108 |
catcttcaccaatattatcctcctcatttctagcaacagctcttccatggaatgaggctccccacaaatcttcacttccagaactaacacctttatcaat |
207 |
Q |
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| T |
25172321 |
catcttcaccaatattatcctcctcatttctagcaacagctcttccatggaatgaggctccccacaaatcttcacttccagaactaacacctttatcaat |
25172420 |
T |
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| Q |
208 |
atctccatcatataacgcggaatctctatcactatcatcaactgttgatgtaggtgaaccaacttcagaaacttctacttgtaaatcagaagctatagaa |
307 |
Q |
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| T |
25172421 |
atctccatcatataacgcggaatctctatcactatcatcaactgttgatgtaggtgaaccaacttcagaaacttctacttgtaaatcagaagctatagaa |
25172520 |
T |
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| Q |
308 |
tatgttggcgtatgacaaatgcgccgatcagttaagaacatagtttcttgccttttatcaattggagatggaataatgtcaaacatagattcattcacag |
407 |
Q |
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| T |
25172521 |
tatgttggcgtatgacaaatgcgccgatcagttaagaacatagtttcttgccttttatcaattggagatggaataatgtcaaacatagattcattcacag |
25172620 |
T |
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| Q |
408 |
gtgttgtattggtagaagaaactggtaaattaaagagtctctcacgagaaaacgaaaaccttagtgtcggccctgaccctggcttttgagaaacactagc |
507 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25172621 |
gtgttgtatcggtagaagaaactggtaaattaaagagtctctcacgagaaaacgaaaaccttagtgtcggccctgaccctggcttttgtgaaacactagc |
25172720 |
T |
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| Q |
508 |
ttcaacatttgagacgtttggagctattaagtttgattcacttatttgacctgacatgaattttttatcatgatcagtcgccactttcaca |
598 |
Q |
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| T |
25172721 |
ttcaacatttgagacttttggagctattaagtttgattcacttatttgacctgacatggattttttatcatgatcagtcgccactttcaca |
25172811 |
T |
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