View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4617-Insertion-4 (Length: 353)
Name: NF4617-Insertion-4
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4617-Insertion-4 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 353
Target Start/End: Original strand, 41747014 - 41747355
Alignment:
| Q |
8 |
gaaatttcaggttttactaaaacaatacaatatttggtaagaattaaaggtttttatatatcttcaaatttgcggagagaagattgcaccctcttgtaaa |
107 |
Q |
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| T |
41747014 |
gaaatttcaggttttactaaaacaatacaatattcggtaagaattagaggtttttat----cttcaattttgcggagagaagattgcaccctcttgtaaa |
41747109 |
T |
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| Q |
108 |
ctgcatgccaaccattttgagaaggatggaaattgttccaatagaatgaaagccctggcttatcacatacactatatttctttgctccyttctcatcgac |
207 |
Q |
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| T |
41747110 |
ctgcatgccaaccattttgagaaggatggaaattgttccaatagaatgaaagccctggtttatcacatacactatatttctttgctcctttctcatcgac |
41747209 |
T |
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| Q |
208 |
acttccacaataataacttgaactcactcccacacaacatggttgcaatggattcatcaatgttgagtttgctgcataatggagaaaagttattaggtgc |
307 |
Q |
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| T |
41747210 |
acttccacaataataacttgaactcactcccacacaacatggttgcaatggattcatcaatgttgagtttgctgcataatggagaaaagttattaggtgc |
41747309 |
T |
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| Q |
308 |
aaaagttagttatactaattaattagttaagttcgttagttcgttg |
353 |
Q |
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| T |
41747310 |
aaaagttagttatactaattaattagttaagttcgttagttcgttg |
41747355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 283
Target Start/End: Original strand, 41753477 - 41753647
Alignment:
| Q |
113 |
tgccaaccattttgagaaggatggaaattgttccaatagaatgaaagccctggcttatcacatacactatatttctttgctccyttctcatcgacacttc |
212 |
Q |
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| T |
41753477 |
tgccaaccattttgagaaggatgtacaccgtcccaaaagaatgaaagctctggtttctcacatacactatatttcttttctcctttatcatccacacttc |
41753576 |
T |
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| Q |
213 |
cacaataataacttgaactcactcccacacaacatggttgcaatggattcatcaatgttgagtttgctgca |
283 |
Q |
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| T |
41753577 |
cacaattatttttcaaaccatctcccacacaacacgctttcaatggattcatcagtgttgagttttctgca |
41753647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 295
Target Start/End: Original strand, 41757829 - 41758043
Alignment:
| Q |
81 |
ggagagaagattgcaccctcttgtaaactgcatgccaaccattttgagaaggatggaaattgttccaatagaatgaaagccctggcttatcacatacact |
180 |
Q |
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| T |
41757829 |
ggagagaagattgcaacagtgtgtagacagcatgccaaccattttgagaagggtgaacattgtcccaaaagaatgaaagctttggtttctcacataaact |
41757928 |
T |
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| Q |
181 |
atatttctttgctccyttctcatcgacacttccacaataataacttgaactcactcccacacaacatggttgcaatggattcatcaatgttgagtttgct |
280 |
Q |
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| T |
41757929 |
gtatttcttttctccattatcatccacttttccacaagtatttgtcaaaccatctccctcacaacatgatttcagtggattcatcagggttgagttttct |
41758028 |
T |
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| Q |
281 |
gcataatggagaaaa |
295 |
Q |
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| T |
41758029 |
gtacaatggagaaaa |
41758043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 277
Target Start/End: Original strand, 41732441 - 41732615
Alignment:
| Q |
103 |
gtaaactgcatgccaaccattttgagaaggatggaaattgttccaatagaatgaaagccctggcttatcacatacactatatttctttgctccyttctca |
202 |
Q |
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| T |
41732441 |
gtaaacttcataccaaccattttgagaagggtgaactgtgtcccaaaagagtgaagactcaagcttctcacatacactatatttccttgctcctttatta |
41732540 |
T |
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| Q |
203 |
tcgacacttccacaataataacttgaactcactcccacacaacatggttgcaatggattcatcaatgttgagttt |
277 |
Q |
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| T |
41732541 |
tcaacacttccacaaaaatatttcaaatcctctcccttacaacacggttgcaacggattcatcactgttgagttt |
41732615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 41738618 - 41738650
Alignment:
| Q |
234 |
ctcccacacaacatggttgcaatggattcatca |
266 |
Q |
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| T |
41738618 |
ctcccacacaacatggttgcaacggattcatca |
41738650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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