View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4617-Insertion-5 (Length: 108)

Name: NF4617-Insertion-5
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4617-Insertion-5
NF4617-Insertion-5
[»] chr3 (2 HSPs)
chr3 (10-64)||(2949086-2949140)
chr3 (79-108)||(2949153-2949182)
[»] chr2 (3 HSPs)
chr2 (10-108)||(38248134-38248232)
chr2 (10-58)||(38248889-38248937)
chr2 (10-64)||(4834727-4834781)
[»] chr5 (1 HSPs)
chr5 (10-57)||(19980965-19981012)
[»] chr1 (2 HSPs)
chr1 (10-56)||(34082860-34082906)
chr1 (10-53)||(34082280-34082323)


Alignment Details
Target: chr3 (Bit Score: 51; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 2949086 - 2949140
Alignment:
Q  10 ctcaaccattaatttcaatcaatcaagtggctaataattcacaatatattaaatt 64  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2949086 ctcaactattaatttcaatcaatcaagtggctaataattcacaatatattaaatt 2949140  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 108
Target Start/End: Original strand, 2949153 - 2949182
Alignment:
Q  79 caaaaacagtggcacatacaatctgtctcc 108  Q
    ||||||||||||||||||||||||||||||    
T  2949153 caaaaacagtggcacatacaatctgtctcc 2949182  T

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Target: chr2 (Bit Score: 46; Significance: 9e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 9e-18
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 38248134 - 38248232
Alignment:
Q  10 ctcaaccattaatttcaatcaatcaagtggctaataattcacaatatattaaattnnnnnnnnnnnccccaaaaacagtggcacatacaatctgtctcc 108  Q
    |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||             |||||||||||||||||||||||||||||||    
T  38248134 ctcaaccattaattccaatcaatgaagtgactaataattcacaatatattaaattaaaaaaaaaaaatccaaaaacagtggcacatacaatctgtctcc 38248232  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 38248937 - 38248889
Alignment:
Q  10 ctcaaccattaatttcaatcaatcaagtggctaataattcacaatatat 58  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38248937 ctcaaccattaatttcaatcaatcaagtggctaataattcataatatat 38248889  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 4834781 - 4834727
Alignment:
Q  10 ctcaaccattaatttcaatcaatcaagtggctaataattcacaatatattaaatt 64  Q
    |||||||| ||||| |||| |||||||||||||||||||||||||| ||| ||||    
T  4834781 ctcaaccactaattccaattaatcaagtggctaataattcacaataaattcaatt 4834727  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 19980965 - 19981012
Alignment:
Q  10 ctcaaccattaatttcaatcaatcaagtggctaataattcacaatata 57  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||    
T  19980965 ctcaaccattaatttctattaatcaagtggctaataattcacaatata 19981012  T

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Target: chr1 (Bit Score: 31; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 34082906 - 34082860
Alignment:
Q  10 ctcaaccattaatttcaatcaatcaagtggctaataattcacaatat 56  Q
    |||||||| ||||| |||||||||| ||||||| |||||||||||||    
T  34082906 ctcaaccactaattccaatcaatcatgtggctattaattcacaatat 34082860  T

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Target: chr1; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 34082280 - 34082323
Alignment:
Q  10 ctcaaccattaatttcaatcaatcaagtggctaataattcacaa 53  Q
    |||||||| |||||| ||| ||||||||||||| ||||||||||    
T  34082280 ctcaaccactaattttaattaatcaagtggctattaattcacaa 34082323  T

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