View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4617_high_1 (Length: 763)

Name: NF4617_high_1
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4617_high_1
NF4617_high_1
[»] chr4 (16 HSPs)
chr4 (1-739)||(1746985-1747723)
chr4 (223-308)||(35723373-35723457)
chr4 (229-273)||(40613443-40613487)
chr4 (234-273)||(8423740-8423779)
chr4 (215-273)||(20743300-20743358)
chr4 (223-273)||(36635311-36635361)
chr4 (3-184)||(6005825-6006005)
chr4 (254-314)||(44132627-44132685)
chr4 (229-273)||(7012059-7012103)
chr4 (229-307)||(22234880-22234957)
chr4 (229-273)||(23293008-23293052)
chr4 (235-306)||(38148716-38148785)
chr4 (223-273)||(903909-903959)
chr4 (235-273)||(22440622-22440660)
chr4 (234-271)||(23861455-23861492)
chr4 (237-278)||(30522932-30522973)
[»] chr7 (25 HSPs)
chr7 (223-306)||(32308107-32308188)
chr7 (229-307)||(19206043-19206119)
chr7 (223-314)||(6630895-6630984)
chr7 (229-273)||(29787391-29787435)
chr7 (230-307)||(30731031-30731104)
chr7 (223-272)||(11722121-11722170)
chr7 (233-300)||(5548673-5548738)
chr7 (223-297)||(20549778-20549850)
chr7 (223-293)||(22868029-22868097)
chr7 (231-273)||(23191891-23191933)
chr7 (223-273)||(26733291-26733341)
chr7 (223-273)||(27945028-27945078)
chr7 (224-300)||(22602707-22602781)
chr7 (229-313)||(24339635-24339717)
chr7 (229-270)||(28155563-28155604)
chr7 (229-273)||(24289813-24289857)
chr7 (229-273)||(25481895-25481939)
chr7 (223-269)||(10042924-10042970)
chr7 (223-300)||(21828402-21828477)
chr7 (223-273)||(22484012-22484062)
chr7 (235-273)||(32287485-32287523)
chr7 (223-268)||(25791640-25791685)
chr7 (223-307)||(26329372-26329454)
chr7 (244-312)||(35297657-35297723)
chr7 (222-271)||(35861950-35861999)
[»] chr6 (31 HSPs)
chr6 (221-313)||(10339109-10339200)
chr6 (220-297)||(19040336-19040411)
chr6 (220-313)||(26562673-26562764)
chr6 (223-297)||(7265593-7265665)
chr6 (223-300)||(9027165-9027240)
chr6 (223-273)||(9658866-9658916)
chr6 (223-314)||(16766684-16766773)
chr6 (229-307)||(5000616-5000692)
chr6 (218-272)||(7801179-7801233)
chr6 (229-271)||(9629376-9629418)
chr6 (229-267)||(20371138-20371176)
chr6 (236-300)||(9025491-9025553)
chr6 (224-273)||(17341686-17341735)
chr6 (223-314)||(9107353-9107442)
chr6 (229-269)||(10842525-10842565)
chr6 (223-266)||(5732539-5732582)
chr6 (229-307)||(8931592-8931668)
chr6 (229-271)||(7377972-7378014)
chr6 (223-273)||(7996400-7996450)
chr6 (223-273)||(8022351-8022401)
chr6 (223-273)||(12696311-12696361)
chr6 (223-273)||(13851723-13851773)
chr6 (223-269)||(17841615-17841661)
chr6 (223-273)||(19044451-19044501)
chr6 (237-271)||(30866168-30866202)
chr6 (231-272)||(6665208-6665249)
chr6 (233-313)||(10294104-10294182)
chr6 (220-273)||(13360394-13360447)
chr6 (220-273)||(31959143-31959196)
chr6 (236-273)||(32511688-32511725)
chr6 (223-307)||(34073337-34073419)
[»] chr8 (19 HSPs)
chr8 (229-307)||(24362192-24362268)
chr8 (231-307)||(11927076-11927150)
chr8 (229-273)||(34897078-34897122)
chr8 (229-269)||(39954305-39954345)
chr8 (223-313)||(15816113-15816201)
chr8 (223-297)||(31109518-31109590)
chr8 (229-271)||(31236601-31236643)
chr8 (229-297)||(13844596-13844662)
chr8 (236-273)||(18067956-18067993)
chr8 (223-271)||(13436988-13437036)
chr8 (223-271)||(22651963-22652011)
chr8 (229-269)||(27101508-27101548)
chr8 (205-273)||(30271313-30271381)
chr8 (234-273)||(4611532-4611571)
chr8 (223-297)||(4786338-4786410)
chr8 (229-307)||(11944658-11944734)
chr8 (231-273)||(7658458-7658500)
chr8 (229-271)||(27213540-27213582)
chr8 (223-273)||(29510326-29510376)
[»] chr1 (39 HSPs)
chr1 (231-313)||(25361881-25361961)
chr1 (223-273)||(2896143-2896193)
chr1 (223-273)||(36878448-36878498)
chr1 (236-308)||(34371714-34371783)
chr1 (229-300)||(9828037-9828106)
chr1 (229-273)||(10474999-10475043)
chr1 (221-307)||(10572579-10572663)
chr1 (223-273)||(398787-398837)
chr1 (223-273)||(17831553-17831603)
chr1 (223-271)||(6427337-6427385)
chr1 (229-300)||(7918208-7918277)
chr1 (229-273)||(12443482-12443526)
chr1 (220-271)||(1262868-1262919)
chr1 (223-273)||(5376522-5376572)
chr1 (223-277)||(6415019-6415073)
chr1 (229-306)||(17754304-17754379)
chr1 (240-313)||(44482234-44482305)
chr1 (222-271)||(609482-609531)
chr1 (220-273)||(19562643-19562696)
chr1 (229-273)||(113292-113336)
chr1 (237-273)||(10233254-10233290)
chr1 (233-273)||(25098577-25098617)
chr1 (229-273)||(34298429-34298473)
chr1 (223-270)||(9709807-9709854)
chr1 (234-273)||(26238134-26238173)
chr1 (222-273)||(27471588-27471639)
chr1 (220-271)||(38078685-38078736)
chr1 (231-297)||(39953146-39953210)
chr1 (231-273)||(5898288-5898330)
chr1 (223-277)||(9103627-9103681)
chr1 (235-273)||(20157372-20157410)
chr1 (223-273)||(38503307-38503357)
chr1 (223-273)||(40285676-40285726)
chr1 (231-269)||(41877496-41877534)
chr1 (223-264)||(9690303-9690344)
chr1 (229-297)||(29163381-29163447)
chr1 (232-273)||(31015039-31015080)
chr1 (223-272)||(36905984-36906033)
chr1 (236-273)||(40181871-40181908)
[»] chr5 (25 HSPs)
chr5 (214-314)||(3966481-3966579)
chr5 (205-271)||(30098295-30098361)
chr5 (195-271)||(19737506-19737582)
chr5 (229-273)||(28588696-28588740)
chr5 (230-273)||(27932229-27932272)
chr5 (223-313)||(39698528-39698616)
chr5 (223-269)||(27144450-27144496)
chr5 (223-268)||(17123035-17123080)
chr5 (223-271)||(31084310-31084358)
chr5 (223-270)||(2436909-2436956)
chr5 (223-341)||(6035470-6035585)
chr5 (223-273)||(6247609-6247659)
chr5 (223-273)||(6326319-6326369)
chr5 (223-269)||(14674256-14674302)
chr5 (231-269)||(19579696-19579734)
chr5 (223-273)||(21191078-21191128)
chr5 (236-273)||(6471911-6471948)
chr5 (230-271)||(9449463-9449504)
chr5 (220-273)||(21576767-21576820)
chr5 (233-270)||(26716141-26716178)
chr5 (233-270)||(26985881-26985918)
chr5 (237-297)||(30502388-30502446)
chr5 (237-297)||(30542731-30542789)
chr5 (234-310)||(32766930-32767004)
chr5 (237-301)||(36838544-36838606)
[»] chr2 (17 HSPs)
chr2 (229-273)||(21616755-21616799)
chr2 (222-273)||(21782840-21782891)
chr2 (236-306)||(44860320-44860388)
chr2 (223-268)||(31284035-31284080)
chr2 (233-273)||(37411266-37411306)
chr2 (235-313)||(18889575-18889651)
chr2 (223-273)||(23718013-23718063)
chr2 (223-273)||(24105685-24105735)
chr2 (231-273)||(28677904-28677946)
chr2 (205-273)||(24894357-24894426)
chr2 (223-295)||(31808064-31808134)
chr2 (233-273)||(18276518-18276558)
chr2 (231-273)||(10535781-10535823)
chr2 (229-271)||(18420458-18420500)
chr2 (223-273)||(21374721-21374771)
chr2 (223-273)||(30404872-30404922)
chr2 (233-307)||(36409619-36409689)
[»] scaffold0004 (1 HSPs)
scaffold0004 (223-273)||(92794-92844)
[»] chr3 (26 HSPs)
chr3 (221-273)||(4987313-4987365)
chr3 (229-308)||(8039824-8039901)
chr3 (229-273)||(8383250-8383294)
chr3 (223-298)||(26290358-26290431)
chr3 (202-277)||(8412963-8413038)
chr3 (229-271)||(5407271-5407313)
chr3 (224-273)||(10690284-10690333)
chr3 (220-273)||(10954936-10954989)
chr3 (229-297)||(49505154-49505220)
chr3 (223-271)||(5441055-5441103)
chr3 (234-297)||(7928448-7928509)
chr3 (229-273)||(12704000-12704044)
chr3 (229-273)||(34307802-34307846)
chr3 (223-271)||(40052319-40052367)
chr3 (223-278)||(2620070-2620125)
chr3 (223-270)||(9800027-9800074)
chr3 (234-300)||(11313797-11313861)
chr3 (230-273)||(14979175-14979218)
chr3 (229-313)||(25064902-25064982)
chr3 (223-273)||(1438791-1438841)
chr3 (223-273)||(21479105-21479155)
chr3 (223-273)||(21720751-21720801)
chr3 (229-313)||(14209106-14209188)
chr3 (233-270)||(24633763-24633800)
chr3 (223-307)||(28678290-28678372)
chr3 (220-273)||(32429402-32429455)
[»] scaffold0036 (1 HSPs)
scaffold0036 (233-307)||(9737-9809)
[»] scaffold1528 (1 HSPs)
scaffold1528 (229-306)||(1028-1103)
[»] scaffold0306 (1 HSPs)
scaffold0306 (223-273)||(13387-13437)
[»] scaffold0152 (1 HSPs)
scaffold0152 (223-273)||(21890-21940)
[»] scaffold0103 (1 HSPs)
scaffold0103 (223-273)||(51798-51848)
[»] scaffold0223 (1 HSPs)
scaffold0223 (229-305)||(20165-20239)
[»] scaffold0044 (1 HSPs)
scaffold0044 (229-273)||(53173-53217)
[»] scaffold0020 (1 HSPs)
scaffold0020 (229-300)||(135309-135378)
[»] scaffold0123 (1 HSPs)
scaffold0123 (236-306)||(44516-44584)
[»] scaffold0110 (1 HSPs)
scaffold0110 (220-271)||(28834-28885)
[»] scaffold0018 (1 HSPs)
scaffold0018 (223-270)||(192274-192321)
[»] scaffold0008 (1 HSPs)
scaffold0008 (237-307)||(263362-263430)
[»] scaffold0003 (1 HSPs)
scaffold0003 (223-313)||(241581-241669)
[»] scaffold0085 (1 HSPs)
scaffold0085 (229-271)||(26386-26428)
[»] scaffold0136 (1 HSPs)
scaffold0136 (233-313)||(3833-3911)
[»] scaffold0024 (1 HSPs)
scaffold0024 (238-314)||(68225-68299)


Alignment Details
Target: chr4 (Bit Score: 608; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 1 - 739
Target Start/End: Original strand, 1746985 - 1747723
Alignment:
Q  1 aatccagatgatacaattcaagggaaagcaaagaaaaacaatgtaatttataactttgtataacacataactaattgcattatattgcacattatataaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1746985 aatccagatgatacaattcaagggaaagcaaagaaaaacaatgtaatttataactttgtataacacataactaattgcattatattgcaccttatataaa 1747084  T
Q  101 aatcttaacatacaagattactaggaaattatggtgcatagagtaataatcaaatacagaaaatctaagttggcattttcaaagnnnnnnnctagtttca 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||       |||||||||    
T  1747085 aatcttaccatacaagattactaggaaattatggtgcatagagtaataatcaaatac--------taagttggcattttcaaagaaaaaaactagtttca 1747176  T
Q  201 atcaatgaagcaaggacaccgaacacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaac--------attttatgtgtcag 292  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||| ||||||||||    
T  1747177 atcaatgaagcaaggacaccgagcacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaattatacgttattatatgtgtcag 1747276  T
Q  293 tgtcgtgttggtgtcgaacacatggggacacgcttaatctaaggagtgttgcaggtcaacctcttcaaggaagggaagtcatcgtagtcgtagctaacaa 392  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||| ||||||||    
T  1747277 tgtcgtgttggtgtcgaacacatggggacacgcctaatctaaggagtgttgtaggtcaacctcttcaagggagggaagtcattgtagtcgtggctaacaa 1747376  T
Q  393 ctaggtcgtttttatggagagagtggtcaaagttggaacaagtgagaggggtaaacattgtaatcttaatctctttggacaaagctcgcaatccctttgc 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1747377 ctaggtcgtttttatggagagagtggtcaaagttggaacaagtgagaggggtaaacattgtaatcttaatctctttggacaaagctcgcaatccctttgc 1747476  T
Q  493 aggaaaagtggattggttggataggttgagcaatttgaggtgcaatcggaaagtggagattaggaggagaagccggttgaggtggttgaggttaccgcgg 592  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1747477 tggaaaagtggattggttggataggttgagcaatttgaggtgcaatcggaaagtggagattaggaggagaagccggttgaggtggttgaggttaccgcgg 1747576  T
Q  593 aagcgtgtgaggttaaggcaggcgatgttggggaaacgctggaagagacgtgggaagtaaggtagggtttggtttgagattgaaagagagaatttgtgac 692  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1747577 aagcgtgtgaggttaaggcaggcgatattggggaaacgctggaagagacgtgggaggtaaggtagggtttggtttgagattgaaagagagaatttgtgac 1747676  T
Q  693 agttggttagggagagtaactgttttgagacgagggagagaaccttc 739  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||    
T  1747677 agttggttagggagagtaactgctttgagatgagggagagaaccttc 1747723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 223 - 308
Target Start/End: Complemental strand, 35723457 - 35723373
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaat-cacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcg 308  Q
    ||||| ||||||||||||||||||||| |||||||||| ||||||||||| | ||  ||| |||||||||||||||| | |||||||    
T  35723457 acactgacacgccgacaccgctaataatttgagaaaatacacataattcaatgta--attatatgtgtcagtgtcgtatcggtgtcg 35723373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 40613443 - 40613487
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  40613443 acacgccgacaccgctaatattttgagaaaatcacataattcagt 40613487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 8423779 - 8423740
Alignment:
Q  234 ccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  8423779 ccgacaccgctaataatttgagaaaatcacataattcagt 8423740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 20743358 - 20743300
Alignment:
Q  215 gacaccgaacacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||| |||||||| |||||||||||| | |||||| |||||||||| ||||||||||||    
T  20743358 gacatcgaacactgacacgccgacacggataataatttgagaaaatgacataattcagt 20743300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 36635311 - 36635361
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| ||||||| ||||| ||||||| |||||||||||||||||||||||    
T  36635311 acactgacacgccaacaccactaataatttgagaaaatcacataattcagt 36635361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 184
Target Start/End: Original strand, 6005825 - 6006005
Alignment:
Q  3 tccagatgatacaattcaagggaaagcaaagaaaaacaatgtaatttataactttgtataacacataactaattgcattatattgcacattatataaaaa 102  Q
    ||||||||||| ||||||||||||||  ||| ||||| || ||||||| |||  ||||||||||  ||||  ||  |||| ||||  ||||||||||| |    
T  6005825 tccagatgatataattcaagggaaagtgaag-aaaactatataatttaaaacgatgtataacacccaacttgttatattacattgtgcattatataaata 6005923  T
Q  103 tcttaacatacaagattactaggaaattatggtgcatagagtaataatcaaatacagaaaatctaagttggcattttcaaag 184  Q
    | ||| ||||||  |||| | || ||||||| |||| || || | || || |||||  |||||||||||| |||||||||||    
T  6005924 tgttaccatacacaattaattggcaattatgatgcacagggtgacaaacatatacaacaaatctaagttgacattttcaaag 6006005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 44132685 - 44132627
Alignment:
Q  254 agaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacaca 314  Q
    |||||||||| ||||||||| |||  || |||||||| |||||||||||||||||||||||    
T  44132685 agaaaatcacgtaattcagtataa--ttatatgtgtcggtgtcgtgttggtgtcgaacaca 44132627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 7012059 - 7012103
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||||||||| |||||| |||||||||| ||||||||||||    
T  7012059 acacgccgacaccgataataatttgagaaaatgacataattcagt 7012103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 22234957 - 22234880
Alignment:
Q  229 acacgccgacaccgctaataaattg-agaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 307  Q
    |||||||||||||||||| || ||| | |||||||||||||||||| ||  ||| |||||||| ||||||||| ||||||    
T  22234957 acacgccgacaccgctaaaaatttgaaaaaaatcacataattcagtgta--attctatgtgtcggtgtcgtgtcggtgtc 22234880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 23293052 - 23293008
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||||||| |||||||| |||| ||||||||||||||||||    
T  23293052 acacgccgacacagctaataatttgaaaaaatcacataattcagt 23293008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 38148785 - 38148716
Alignment:
Q  235 cgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgt 306  Q
    ||||||||||||||  ||||||||||||||||||||||| ||  ||||||  ||||  ||||||||||||||    
T  38148785 cgacaccgctaatagtttgagaaaatcacataattcagtgta--attttaaatgtcgatgtcgtgttggtgt 38148716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 903909 - 903959
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| |||| ||| ||||| |||||| |||||||||||||||||||||||    
T  903909 acactgacacaccggcaccgttaataatttgagaaaatcacataattcagt 903959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 22440660 - 22440622
Alignment:
Q  235 cgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  22440660 cgacaccgttaataatttgagaaaatcacataattcagt 22440622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 23861492 - 23861455
Alignment:
Q  234 ccgacaccgctaataaattgagaaaatcacataattca 271  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  23861492 ccgacaccgctaataaattgataaaatcacatgattca 23861455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 30522973 - 30522932
Alignment:
Q  237 acaccgctaataaattgagaaaatcacataattcagtttaac 278  Q
    ||||||||||| | ||||||||||||||||||||||| ||||    
T  30522973 acaccgctaattatttgagaaaatcacataattcagtgtaac 30522932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 223 - 306
Target Start/End: Original strand, 32308107 - 32308188
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgt 306  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||  ||| |||||||||||||||||| |||||    
T  32308107 acactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgta--attgtatgtgtcagtgtcgtgtcggtgt 32308188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 19206043 - 19206119
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 307  Q
    ||||||||||||||||||||| |||||||||||||||||||||  |||  ||| |||||||| ||||| ||||||||||    
T  19206043 acacgccgacaccgctaataatttgagaaaatcacataattca--ttataattatatgtgtcggtgtcttgttggtgtc 19206119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 6630984 - 6630895
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacaca 314  Q
    ||||| ||||||||||||| ||||||| |||||||| |||| ||||||||| ||  ||| ||||||||  |||||||||||||||| |||||    
T  6630984 acactgacacgccgacaccactaataatttgagaaagtcacttaattcagtgta--attatatgtgtcgatgtcgtgttggtgtcggacaca 6630895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 29787435 - 29787391
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  29787435 acacgccgacaccgctaataatttgagaaaatcacataattcagt 29787391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 30731031 - 30731104
Alignment:
Q  230 cacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 307  Q
    |||||||||||||| ||||| ||||||||||||||||||||||| |||    || |||||| ||||||||||||||||    
T  30731031 cacgccgacaccgcgaataatttgagaaaatcacataattcagtgtaa----ttgtgtgtcggtgtcgtgttggtgtc 30731104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 223 - 272
Target Start/End: Complemental strand, 11722170 - 11722121
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcag 272  Q
    ||||| |||||||||||||||||| || ||||||||||||||||||||||    
T  11722170 acactgacacgccgacaccgctaacaatttgagaaaatcacataattcag 11722121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 5548673 - 5548738
Alignment:
Q  233 gccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgt 300  Q
    |||||||||||| |||| |||||||||||| |||||||||| ||  ||| ||||||||||||||||||    
T  5548673 gccgacaccgctgataatttgagaaaatcaaataattcagtgta--attatatgtgtcagtgtcgtgt 5548738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 20549778 - 20549850
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 297  Q
    ||||| |||| |||||||||||||||| ||||||||||||| ||||||||| ||  ||| |||||||| ||||||    
T  20549778 acactgacacaccgacaccgctaataatttgagaaaatcacgtaattcagtgta--attatatgtgtcggtgtcg 20549850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 22868029 - 22868097
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagt 293  Q
    ||||| ||||||||||||| |||||||  |||||||||||||||||||||| ||  ||| |||||||||||    
T  22868029 acactgacacgccgacaccactaataatatgagaaaatcacataattcagtgta--attatatgtgtcagt 22868097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 231 - 273
Target Start/End: Original strand, 23191891 - 23191933
Alignment:
Q  231 acgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  23191891 acgccgacaccgctaataatttgagaaaatcacatatttcagt 23191933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 26733291 - 26733341
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| ||||| ||||||||||||||| |||| ||||||||||||||||||    
T  26733291 acactgacacgtcgacaccgctaataatttgacaaaatcacataattcagt 26733341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 27945028 - 27945078
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| ||||||||||||| ||||||| |||||||||| ||||||||||||    
T  27945028 acactgacacgccgacaccactaataatttgagaaaattacataattcagt 27945078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 22602781 - 22602707
Alignment:
Q  224 cacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgt 300  Q
    |||| ||||||||||||||  ||| | ||||||||||||||||||||||| ||  ||| |||||||| |||||||||    
T  22602781 cactgacacgccgacaccgtaaattatttgagaaaatcacataattcagtgta--attatatgtgtcggtgtcgtgt 22602707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 313
Target Start/End: Original strand, 24339635 - 24339717
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 313  Q
    |||||||||||| |||||||| |||| |||||||||||||||||| ||  |||  | ||||| ||||||||| ||||||| ||||    
T  24339635 acacgccgacacagctaataatttgaaaaaatcacataattcagtgta--attacaagtgtcggtgtcgtgtcggtgtcggacac 24339717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 28155563 - 28155604
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattc 270  Q
    ||||||||||||||||||||| |||||||||| |||||||||    
T  28155563 acacgccgacaccgctaataatttgagaaaattacataattc 28155604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 24289813 - 24289857
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||||||||||||| ||||| |||||||||| ||||||||||||    
T  24289813 acacgccgacaccgccaataatttgagaaaattacataattcagt 24289857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 25481895 - 25481939
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||||||| |||||||| |||| ||||||||||||||||||    
T  25481895 acacgccgacacagctaataatttgaaaaaatcacataattcagt 25481939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 10042924 - 10042970
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataatt 269  Q
    ||||||||||||||||||| ||||||| |||| ||| ||||||||||    
T  10042924 acacttacacgccgacaccactaataatttgataaattcacataatt 10042970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 300
Target Start/End: Complemental strand, 21828477 - 21828402
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgt 300  Q
    ||||| |||||||||||||| || ||| |||||||||||||||||| || | ||  ||| ||||||||||||| ||||    
T  21828477 acactgacacgccgacaccgttagtaatttgagaaaatcacataatccattgta--attgtatgtgtcagtgttgtgt 21828402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 22484012 - 22484062
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| ||||||||||||||||||||| || |||||||  |||||||||||    
T  22484012 acactgacacgccgacaccgctaataattttagaaaattgcataattcagt 22484062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 32287523 - 32287485
Alignment:
Q  235 cgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  32287523 cgacaccgctaataatctgagaaaatcacataattcagt 32287485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 25791640 - 25791685
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataat 268  Q
    ||||| ||||||||||||||||||| | |||||||| |||||||||    
T  25791640 acactgacacgccgacaccgctaattatttgagaaattcacataat 25791685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 26329454 - 26329372
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 307  Q
    ||||| ||||||||||| || |||||| ||||||||| |||| |||||||| ||  ||| |||||||| | ||||||| ||||||    
T  26329454 acactgacacgccgacatcgttaataatttgagaaaaacacacaattcagtgta--attatatgtgtcggcgtcgtgtcggtgtc 26329372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 35297723 - 35297657
Alignment:
Q  244 taataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaaca 312  Q
    |||||| |||||||||||||||||||||  |||  ||| |||||||  ||||||||||| |||||||||    
T  35297723 taataatttgagaaaatcacataattca--ttataattatatgtgttggtgtcgtgttgatgtcgaaca 35297657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 35861950 - 35861999
Alignment:
Q  222 aacacttacacgccgacaccgctaataaattgagaaaatcacataattca 271  Q
    |||||| ||||||||||||  ||||||| |||| ||||||||||||||||    
T  35861950 aacactaacacgccgacacaactaataatttgaaaaaatcacataattca 35861999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 221 - 313
Target Start/End: Complemental strand, 10339200 - 10339109
Alignment:
Q  221 gaacacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 313  Q
    ||||||| ||||||||||||||| | ||| ||||||||||||||||||||||| | | ||| |||||||||||| ||||| ||||||| ||||    
T  10339200 gaacactgacacgccgacaccgcgattaatttgagaaaatcacataattcagtgtta-attatatgtgtcagtgccgtgtcggtgtcggacac 10339109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 19040336 - 19040411
Alignment:
Q  220 cgaacacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 297  Q
    |||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| ||  ||| |||||||| ||||||    
T  19040336 cgaatactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgta--attatatgtgtctgtgtcg 19040411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 220 - 313
Target Start/End: Original strand, 26562673 - 26562764
Alignment:
Q  220 cgaacacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 313  Q
    |||||||  |||||||||||| ||||| || ||||||||||||||||||||||| ||  ||| ||||||||  |||||||| ||||||||||||    
T  26562673 cgaacacggacacgccgacactgctaaaaatttgagaaaatcacataattcagtgta--attatatgtgtcgatgtcgtgtcggtgtcgaacac 26562764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 7265665 - 7265593
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 297  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||||||||||| ||  ||| |||||||| ||||||    
T  7265665 acactgacacgccaacaccgctaataatttgagaaaatcacataattcagtgta--attatatgtgtcggtgtcg 7265593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 9027165 - 9027240
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgt 300  Q
    ||||| ||||||||||||||||||||| |||||| ||||||||||||| || ||  ||| |||||||| |||||||||    
T  9027165 acactgacacgccgacaccgctaataatttgagataatcacataattccgtgta--attatatgtgtcggtgtcgtgt 9027240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 9658866 - 9658916
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| ||||||||||||||||||||| || ||||||||||||||||||||    
T  9658866 acactgacacgccgacaccgctaataatttaagaaaatcacataattcagt 9658916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 223 - 314
Target Start/End: Original strand, 16766684 - 16766773
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacaca 314  Q
    ||||| |||||||||||| |||||||| |||| |||||||||||||||||| ||  |||  | ||||| ||||||||| ||||||| |||||    
T  16766684 acactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgta--attacaagtgtcggtgtcgtgtcggtgtcggacaca 16766773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 5000692 - 5000616
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 307  Q
    ||||| ||||||||||||||| | ||||||||||||| ||||||| ||  ||||||| |||||||||| ||| ||||||    
T  5000692 acacgtcgacaccgctaataattcgagaaaatcacatgattcagtata--attttatatgtcagtgtcatgtcggtgtc 5000616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 7801233 - 7801179
Alignment:
Q  218 accgaacacttacacgccgacaccgctaataaattgagaaaatcacataattcag 272  Q
    |||||||||| ||||||||||||  ||||||| |||| |||||||||||||||||    
T  7801233 accgaacactaacacgccgacacaactaataatttgaaaaaatcacataattcag 7801179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 9629376 - 9629418
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattca 271  Q
    ||||||||||||||| ||||| |||||||||||||||||||||    
T  9629376 acacgccgacaccgccaataatttgagaaaatcacataattca 9629418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 229 - 267
Target Start/End: Complemental strand, 20371176 - 20371138
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataa 267  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  20371176 acacgccgacaccgctaataatttgagaaaatcacataa 20371138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 9025553 - 9025491
Alignment:
Q  236 gacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgt 300  Q
    ||||| |||||||| ||||||||||||||||||||||| ||  ||| |||||||| |||||||||    
T  9025553 gacactgctaataatttgagaaaatcacataattcagtgta--attatatgtgtcggtgtcgtgt 9025491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 17341735 - 17341686
Alignment:
Q  224 cacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||| |||||||||||||| |||||| |||| ||||||||||||||||||    
T  17341735 cactgacacgccgacaccgttaataatttgataaaatcacataattcagt 17341686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 9107442 - 9107353
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacaca 314  Q
    ||||| |||||||||||| |||||||| |||| ||||||||| |||||||| ||  |||  | ||||| ||||||||| ||||||| |||||    
T  9107442 acactaacacgccgacacagctaataatttgaaaaaatcacaaaattcagtgta--attacaagtgtcggtgtcgtgtcggtgtcggacaca 9107353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 10842525 - 10842565
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataatt 269  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  10842525 acacgccgacaccgctaataatttgaaaaaatcacataatt 10842565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 266
Target Start/End: Complemental strand, 5732582 - 5732539
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacata 266  Q
    ||||| |||||||||||||| |||||| ||||||||||||||||    
T  5732582 acactgacacgccgacaccgttaataatttgagaaaatcacata 5732539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 8931668 - 8931592
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 307  Q
    |||||||||||| ||||| || |||||||||| |||||||||||| ||  ||| ||||||||  |||||||| ||||||    
T  8931668 acacgccgacacagctaaaaatttgagaaaataacataattcagtata--attatatgtgtcgatgtcgtgtcggtgtc 8931592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 7377972 - 7378014
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattca 271  Q
    |||| ||||||||||||| || |||||||||||||||||||||    
T  7377972 acaccccgacaccgctaaaaatttgagaaaatcacataattca 7378014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 7996450 - 7996400
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| ||| |||||||| |||||||| |||||||||||| ||||||||||    
T  7996450 acactgacatgccgacactgctaataatttgagaaaatcatataattcagt 7996400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 8022351 - 8022401
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| ||| |||||||| |||||||| |||||||||||| ||||||||||    
T  8022351 acactgacatgccgacactgctaataatttgagaaaatcatataattcagt 8022401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 12696311 - 12696361
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| |||||||||||| |||||||| |||| ||||| ||||||||||||    
T  12696311 acactgacacgccgacacagctaataatttgaaaaaattacataattcagt 12696361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 13851723 - 13851773
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| ||||| ||||||||||||||| |||||||||| || |||||||||    
T  13851723 acactgacacgtcgacaccgctaataatttgagaaaataacgtaattcagt 13851773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 17841661 - 17841615
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataatt 269  Q
    ||||| |||||||||||| |||||||| |||| ||||||||||||||    
T  17841661 acactgacacgccgacacagctaataatttgaaaaaatcacataatt 17841615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 19044451 - 19044501
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| ||||||||||||  ||||||| ||||||| |||||||||||||||    
T  19044451 acactgacacgccgacacgactaataatttgagaatatcacataattcagt 19044501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 237 - 271
Target Start/End: Complemental strand, 30866202 - 30866168
Alignment:
Q  237 acaccgctaataaattgagaaaatcacataattca 271  Q
    ||||||||||||| |||||||||||||||||||||    
T  30866202 acaccgctaataatttgagaaaatcacataattca 30866168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 6665208 - 6665249
Alignment:
Q  231 acgccgacaccgctaataaattgagaaaatcacataattcag 272  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||    
T  6665208 acgccgaaaccgctaataatttgagtaaatcacataattcag 6665249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 233 - 313
Target Start/End: Original strand, 10294104 - 10294182
Alignment:
Q  233 gccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 313  Q
    ||||| ||||||||||| |||||| |||| |||| |||| | |||  || |||||||| ||||||||||||||||| ||||    
T  10294104 gccgataccgctaataatttgagataatcgcatatttcaatgtaa--ttatatgtgtcggtgtcgtgttggtgtcggacac 10294182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 13360447 - 13360394
Alignment:
Q  220 cgaacacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||  ||||| ||||||| ||| ||| |||||||||||||||||||||||    
T  13360447 cgaacacagacacgtcgacaccactagtaatttgagaaaatcacataattcagt 13360394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 31959143 - 31959196
Alignment:
Q  220 cgaacacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||| |||||||| ||| |||||||| |||| ||||||||||||| ||||    
T  31959143 cgaacactgacacgccgtcacagctaataatttgaaaaaatcacataatgcagt 31959196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 32511725 - 32511688
Alignment:
Q  236 gacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||||||||| || ||||||||||||||||||||    
T  32511725 gacaccgctaataatttaagaaaatcacataattcagt 32511688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 34073419 - 34073337
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 307  Q
    ||||| ||| ||| ||| ||||||||| ||||||||||| ||||||||||| ||  ||| |||| ||| ||||||||| ||||||    
T  34073419 acactgacatgccaacatcgctaataatttgagaaaatctcataattcagtgta--attatatgggtcggtgtcgtgtcggtgtc 34073337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 24362268 - 24362192
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 307  Q
    ||||||||||||||||||||| |||||| |||||||||||||||| ||  ||| ||||||||| |||||||| ||||||    
T  24362268 acacgccgacaccgctaataatttgagagaatcacataattcagtgta--attatatgtgtcaatgtcgtgtcggtgtc 24362192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 11927150 - 11927076
Alignment:
Q  231 acgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 307  Q
    |||||||||| | |||||| |||| |||||||||||||||||| ||  ||| |||||||| ||||||||||||||||    
T  11927150 acgccgacactgttaataatttgataaaatcacataattcagtgta--attatatgtgtcggtgtcgtgttggtgtc 11927076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 34897078 - 34897122
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||    
T  34897078 acacgtcgacaccgctaataatttgagaaaatcacataattcagt 34897122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 39954345 - 39954305
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataatt 269  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  39954345 acacgccgacaccgctaataatttgagaaaatcacataatt 39954305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 223 - 313
Target Start/End: Complemental strand, 15816201 - 15816113
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 313  Q
    ||||| ||||||||||||  ||||||| |||| |||||||||||||| ||| ||  ||| || ||||| ||||||||||||||||| ||||    
T  15816201 acactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgta--attataagtgtcggtgtcgtgttggtgtcggacac 15816113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 31109590 - 31109518
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 297  Q
    ||||| |||||||||||||| |||||| |||||||||||| | |||||||| ||||  | |||||||||||||||    
T  31109590 acactgacacgccgacaccgttaataatttgagaaaatcaaacaattcagtctaac--tatatgtgtcagtgtcg 31109518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 31236643 - 31236601
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattca 271  Q
    |||||||||||| |||||||| |||||||||||||||||||||    
T  31236643 acacgccgacactgctaataatttgagaaaatcacataattca 31236601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 13844662 - 13844596
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 297  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||| ||  ||| |||||||| ||||||    
T  13844662 acacgccgacactgctaataatttgagaaaatcacataattgagtgta--attatatgtgtcggtgtcg 13844596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 18067993 - 18067956
Alignment:
Q  236 gacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||||||||| |||||||||||||||||||||||    
T  18067993 gacaccgctaataatttgagaaaatcacataattcagt 18067956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 13437036 - 13436988
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattca 271  Q
    ||||| |||||||||||| |||||||| |||| ||||||||||||||||    
T  13437036 acactgacacgccgacacagctaataatttgaaaaaatcacataattca 13436988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 22651963 - 22652011
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattca 271  Q
    ||||| |||||||||||| |||||||| |||| ||||||||||||||||    
T  22651963 acactgacacgccgacacagctaataatttgaaaaaatcacataattca 22652011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 27101508 - 27101548
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataatt 269  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  27101508 acacgccgacaccgctaataatttgaaaaaatcacataatt 27101548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 30271381 - 30271313
Alignment:
Q  205 atgaagcaaggacaccgaacacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||||||  ||||||| ||||| |||||||||||| |||||| | |||| ||||||||||||| ||||    
T  30271381 atgaagcacagacaccggacactgacacgccgacacagctaatcatttgaaaaaatcacataatgcagt 30271313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 273
Target Start/End: Original strand, 4611532 - 4611571
Alignment:
Q  234 ccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  4611532 ccgacaccgctaataatttgagaaaataacataattcagt 4611571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 4786410 - 4786338
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 297  Q
    ||||| |||||||||||||  |||||| || |||||||||||||||||||| ||  ||| |||||||| ||||||    
T  4786410 acactgacacgccgacaccattaataatttaagaaaatcacataattcagtgta--attatatgtgtcggtgtcg 4786338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 11944658 - 11944734
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 307  Q
    |||||||||||| | |||||| |||| |||||||||||| ||||| ||  ||| |||||||| ||||||||||| ||||    
T  11944658 acacgccgacactgttaataatttgataaaatcacataactcagtgta--attatatgtgtcggtgtcgtgttgatgtc 11944734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 231 - 273
Target Start/End: Original strand, 7658458 - 7658500
Alignment:
Q  231 acgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||    
T  7658458 acgccgacaccactaataatttgagaaaattacataattcagt 7658500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 27213540 - 27213582
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattca 271  Q
    |||||||||||| |||||||| || ||||||||||||||||||    
T  27213540 acacgccgacactgctaataatttcagaaaatcacataattca 27213582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 29510376 - 29510326
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| |||||||||||| |||||||| |||| ||||||||| ||||||||    
T  29510376 acactgacacgccgacacagctaataatttgaaaaaatcacaaaattcagt 29510326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 231 - 313
Target Start/End: Original strand, 25361881 - 25361961
Alignment:
Q  231 acgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 313  Q
    ||||||||||| || |||| ||||||||||||||||||||||| ||  ||| |||||||||||||||||| ||||||| ||||    
T  25361881 acgccgacaccactgataatttgagaaaatcacataattcagtgta--attatatgtgtcagtgtcgtgtcggtgtcggacac 25361961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 2896193 - 2896143
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  2896193 acactgacacgccgacaccgctaataatttgagaaaatcacataattcagt 2896143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 36878448 - 36878498
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  36878448 acactgacacgccgacaccgctaataatttgagaaaatcacataattcagt 36878498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 236 - 308
Target Start/End: Original strand, 34371714 - 34371783
Alignment:
Q  236 gacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcg 308  Q
    |||||||||||||| ||||||||||||||||||||||| ||  ||| |||||||| |||||||||||||||||    
T  34371714 gacaccgctaataa-ttgagaaaatcacataattcagtgta--attatatgtgtcggtgtcgtgttggtgtcg 34371783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 229 - 300
Target Start/End: Original strand, 9828037 - 9828106
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgt 300  Q
    ||||||||||||| ||||||| |||| |||||||||||||||||| ||  |||||||||||| |||||||||    
T  9828037 acacgccgacaccactaataatttgataaaatcacataattcagtgta--attttatgtgtcggtgtcgtgt 9828106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 10475043 - 10474999
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  10475043 acacgccgacaccgctaataacttgagaaaatcacataattcagt 10474999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 10572663 - 10572579
Alignment:
Q  221 gaacacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 307  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||||||||| || ||  |||  ||||||| |||| |||||||||||    
T  10572663 gaacactgacacgccgacaccactaataatttgagaaaatcacataattcggtgta--attaaatgtgtcggtgttgtgttggtgtc 10572579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 398837 - 398787
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| ||||||||||||||||||||| |||| ||||||||||||||||||    
T  398837 acactgacacgccgacaccgctaataatttgaaaaaatcacataattcagt 398787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 17831603 - 17831553
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| ||||||||||||||||||||| ||||||||||||||| |||||||    
T  17831603 acactgacacgccgacaccgctaataatttgagaaaatcacattattcagt 17831553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 6427337 - 6427385
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattca 271  Q
    ||||| ||||||| ||||||||||||| |||||||||||||||||||||    
T  6427337 acactgacacgccaacaccgctaataatttgagaaaatcacataattca 6427385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 7918277 - 7918208
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgt 300  Q
    |||||| |||| | ||||||| ||||||||||||||||||||||| ||  ||| ||||||||||||||||||    
T  7918277 acacgctgacatcactaataatttgagaaaatcacataattcagtgta--attatatgtgtcagtgtcgtgt 7918208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 12443526 - 12443482
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||||||| |||||||| |||||||||||||||||||||||    
T  12443526 acacgccgacacagctaataatttgagaaaatcacataattcagt 12443482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 1262868 - 1262919
Alignment:
Q  220 cgaacacttacacgccgacaccgctaataaattgagaaaatcacataattca 271  Q
    |||||||  |||||||||||| |||||||| |||||||||||||||||||||    
T  1262868 cgaacacggacacgccgacacagctaataatttgagaaaatcacataattca 1262919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 5376572 - 5376522
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| ||||||||||||||||||||| || ||||||| ||||||||||||    
T  5376572 acactaacacgccgacaccgctaataatttaagaaaataacataattcagt 5376522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 6415073 - 6415019
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaa 277  Q
    ||||| ||||||||||| ||||||| | |||||||||||||||||| ||||||||    
T  6415073 acactgacacgccgacatcgctaattatttgagaaaatcacataatacagtttaa 6415019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 229 - 306
Target Start/End: Original strand, 17754304 - 17754379
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgt 306  Q
    |||| |||||||||||||||| |||| ||||| |||||||||||| ||||  | ||||||||||||| |||| |||||    
T  17754304 acacaccgacaccgctaataatttgaaaaaattacataattcagtgtaac--tatatgtgtcagtgtggtgtcggtgt 17754379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 44482234 - 44482305
Alignment:
Q  240 ccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 313  Q
    ||||| |||| ||||||||||||||||||||||| ||  ||| |||||||| ||||||||| ||||||| ||||    
T  44482234 ccgcttataatttgagaaaatcacataattcagtgta--attatatgtgtcggtgtcgtgtcggtgtcggacac 44482305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 609531 - 609482
Alignment:
Q  222 aacacttacacgccgacaccgctaataaattgagaaaatcacataattca 271  Q
    |||||| ||||||||||||| ||||||| |||||||||| ||||||||||    
T  609531 aacactgacacgccgacaccactaataatttgagaaaattacataattca 609482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 19562696 - 19562643
Alignment:
Q  220 cgaacacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||| |||||||||||| |||||||| ||||||||||| |||| ||||||    
T  19562696 cgaacactgacacgccgacactgctaataatttgagaaaatctcatagttcagt 19562643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 113292 - 113336
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||||||| |||||||| |||| ||||||||||||||||||    
T  113292 acacgccgacacagctaataatttgaaaaaatcacataattcagt 113336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 10233254 - 10233290
Alignment:
Q  237 acaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| |||||||||||||||||||||||||||||||    
T  10233254 acaccactaataaattgagaaaatcacataattcagt 10233290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 25098617 - 25098577
Alignment:
Q  233 gccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  25098617 gccgacaccgctgataatttgagaaaatcacataattcagt 25098577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 34298429 - 34298473
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||| |||||||| ||||||| |||||||||||||||||||||||    
T  34298429 acacaccgacaccactaataatttgagaaaatcacataattcagt 34298473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 9709807 - 9709854
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattc 270  Q
    ||||| ||| ||| ||||||||||||| ||||||||||||||||||||    
T  9709807 acactgacatgcctacaccgctaataatttgagaaaatcacataattc 9709854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 26238173 - 26238134
Alignment:
Q  234 ccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  26238173 ccgacaccgctaataatttgagaaaataacataattcagt 26238134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 27471639 - 27471588
Alignment:
Q  222 aacacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||| |||| |||| ||||||||||| ||||||||| |||||||||||||    
T  27471639 aacactgacacaccgataccgctaataatttgagaaaagcacataattcagt 27471588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 38078736 - 38078685
Alignment:
Q  220 cgaacacttacacgccgacaccgctaataaattgagaaaatcacataattca 271  Q
    |||||||| ||||| |||||| |||||||| |||| ||||||||||||||||    
T  38078736 cgaacactgacacgtcgacacagctaataatttgaaaaaatcacataattca 38078685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 297
Target Start/End: Complemental strand, 39953210 - 39953146
Alignment:
Q  231 acgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 297  Q
    ||||||||||||||||||| || |||||||||||||||| ||| ||  ||| |||||||| ||||||    
T  39953210 acgccgacaccgctaataattttagaaaatcacataatttagtgta--attgtatgtgtcggtgtcg 39953146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 231 - 273
Target Start/End: Complemental strand, 5898330 - 5898288
Alignment:
Q  231 acgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||||||||||||||  ||| ||||||||||||||||||    
T  5898330 acgccgacaccgctaataatctgaaaaaatcacataattcagt 5898288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 9103627 - 9103681
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaa 277  Q
    ||||| |||||||||||| | |||||| |||| |||||||||||||| |||||||    
T  9103627 acactgacacgccgacacagttaataatttgaaaaaatcacataatttagtttaa 9103681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 20157410 - 20157372
Alignment:
Q  235 cgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  20157410 cgacaccgctaataatgtgagaaaatcacataattcagt 20157372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 38503307 - 38503357
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| |||| |||||||||||||||| |||||||||||| ||| ||||||    
T  38503307 acactaacacaccgacaccgctaataatttgagaaaatcatatatttcagt 38503357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 40285726 - 40285676
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| |||| || ||||||||||||| ||||||||||| |||||||||||    
T  40285726 acactgacacaccaacaccgctaataatttgagaaaatcgcataattcagt 40285676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 41877534 - 41877496
Alignment:
Q  231 acgccgacaccgctaataaattgagaaaatcacataatt 269  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  41877534 acgccgacaccgctaataatttgagaaaattacataatt 41877496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 9690344 - 9690303
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcaca 264  Q
    ||||| |||||| ||||||||||||||| |||||||||||||    
T  9690344 acactgacacgctgacaccgctaataaactgagaaaatcaca 9690303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 29163447 - 29163381
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 297  Q
    |||||||||||||||||| || ||  ||||||||||||||||| ||||  ||| |||||||| ||||||    
T  29163447 acacgccgacaccgctaaaaatttaggaaaatcacataattcaattta--attatatgtgtcggtgtcg 29163381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 31015039 - 31015080
Alignment:
Q  232 cgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||| |||| |||||||| |||||||||||||||||||||||    
T  31015039 cgcctacacagctaataatttgagaaaatcacataattcagt 31015080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 272
Target Start/End: Original strand, 36905984 - 36906033
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcag 272  Q
    ||||| |||| || |||||||||||||  |||||||||||||||||||||    
T  36905984 acactgacacaccaacaccgctaataatctgagaaaatcacataattcag 36906033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 40181871 - 40181908
Alignment:
Q  236 gacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  40181871 gacactgctaataatttgagaaaatcacataattcagt 40181908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 214 - 314
Target Start/End: Original strand, 3966481 - 3966579
Alignment:
Q  214 ggacaccgaacacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 313  Q
    |||||| | ||||| ||| ||||||||||||||||| |||||||||||||| |||||||| ||  ||| |||||||| |||||||||  |||||| ||||    
T  3966481 ggacactggacactgacatgccgacaccgctaataatttgagaaaatcacacaattcagtgta--attatatgtgtcggtgtcgtgtcagtgtcggacac 3966578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 30098295 - 30098361
Alignment:
Q  205 atgaagcaaggacaccgaacacttacacgccgacaccgctaataaattgagaaaatcacataattca 271  Q
    |||||||| |||||||| ||||| ||||| ||| |||| |||||| |||||||||||||||||||||    
T  30098295 atgaagcacggacaccggacactgacacgacgaaaccgttaataatttgagaaaatcacataattca 30098361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 19737582 - 19737506
Alignment:
Q  195 gtttcaatcaatgaagcaaggacaccgaacacttacacgccgacaccgctaataaattgagaaaatcacataattca 271  Q
    |||||||||  ||||||||||||| || ||||| |||||| || |||| |||||| |||||||||| ||||||||||    
T  19737582 gtttcaatctctgaagcaaggacaacggacactgacacgctgaaaccgataataatttgagaaaattacataattca 19737506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 28588740 - 28588696
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||||||||| |||||| |||||||||||||||||||||||    
T  28588740 acacgccgacaccggtaataatttgagaaaatcacataattcagt 28588696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 230 - 273
Target Start/End: Original strand, 27932229 - 27932272
Alignment:
Q  230 cacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||||||||||||||| |||||||||| ||||||||||||    
T  27932229 cacgccgacaccgctaataatttgagaaaattacataattcagt 27932272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 223 - 313
Target Start/End: Original strand, 39698528 - 39698616
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 313  Q
    ||||| |||||| ||||| |||||||| |||| |||||||||||||||||| ||  |||  | ||||||||||||||| ||||||| ||||    
T  39698528 acactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgta--attacaagtgtcagtgtcgtgtcggtgtcggacac 39698616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 27144450 - 27144496
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataatt 269  Q
    ||||| ||||||||||||||||||||| ||||| |||||||||||||    
T  27144450 acactgacacgccgacaccgctaataatttgaggaaatcacataatt 27144496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 17123035 - 17123080
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataat 268  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  17123035 acactgacacgccaacaccgctaataatttgagaaaatcacataat 17123080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 31084310 - 31084358
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattca 271  Q
    ||||| |||||||||||| |||||||| |||| ||||||||||||||||    
T  31084310 acactgacacgccgacacagctaataatttgaaaaaatcacataattca 31084358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 2436909 - 2436956
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattc 270  Q
    ||||| ||||||||||||||||||||| |||  |||||||||||||||    
T  2436909 acactgacacgccgacaccgctaataatttgcaaaaatcacataattc 2436956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 341
Target Start/End: Original strand, 6035470 - 6035585
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacacatggggaca 322  Q
    ||||| ||||||||||||||||||||| ||||| |||| | |||||||||| ||  ||| ||| |||| ||||||||| |||| |  ||||   ||||||    
T  6035470 acactgacacgccgacaccgctaataatttgag-aaataatataattcagtgta--attatatttgtcggtgtcgtgtcggtgacagacacgccgggaca 6035566  T
Q  323 cgcttaatctaaggagtgt 341  Q
    ||| |||||| ||||||||    
T  6035567 cgcctaatctgaggagtgt 6035585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 6247609 - 6247659
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| ||||||||||||  ||||||| |||| ||||||||||||||||||    
T  6247609 acactgacacgccgacacatctaataatttgaaaaaatcacataattcagt 6247659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 6326369 - 6326319
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| ||||||||||| ||||| ||| |||||||||| ||||||||||||    
T  6326369 acactgacacgccgacatcgctagtaatttgagaaaattacataattcagt 6326319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 14674256 - 14674302
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataatt 269  Q
    ||||| |||||||||||| |||||||| |||| ||||||||||||||    
T  14674256 acactgacacgccgacacagctaataatttgaaaaaatcacataatt 14674302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 19579696 - 19579734
Alignment:
Q  231 acgccgacaccgctaataaattgagaaaatcacataatt 269  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  19579696 acgccgacacagctaataatttgagaaaatcacataatt 19579734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 21191128 - 21191078
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| ||| |||||||| |||||||| |||| ||||||||||||||||||    
T  21191128 acactgacatgccgacacagctaataatttgaaaaaatcacataattcagt 21191078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 6471948 - 6471911
Alignment:
Q  236 gacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  6471948 gacacggctaataatttgagaaaatcacataattcagt 6471911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 9449463 - 9449504
Alignment:
Q  230 cacgccgacaccgctaataaattgagaaaatcacataattca 271  Q
    ||||||||||||  |||||| |||||||||||||||||||||    
T  9449463 cacgccgacaccaataataatttgagaaaatcacataattca 9449504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 21576820 - 21576767
Alignment:
Q  220 cgaacacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||| | ||||| |||| |||||||| |||| ||||||||||||||||||    
T  21576820 cgaacactgatacgccaacacagctaataatttgaaaaaatcacataattcagt 21576767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 26716141 - 26716178
Alignment:
Q  233 gccgacaccgctaataaattgagaaaatcacataattc 270  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  26716141 gccgacactgctaataatttgagaaaatcacataattc 26716178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 26985881 - 26985918
Alignment:
Q  233 gccgacaccgctaataaattgagaaaatcacataattc 270  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  26985881 gccgacactgctaataatttgagaaaatcacataattc 26985918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 30502446 - 30502388
Alignment:
Q  237 acaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 297  Q
    ||||||||||||| ||||||||||||| ||||||||| ||  ||| |||||||| ||||||    
T  30502446 acaccgctaataatttgagaaaatcacttaattcagtgta--attatatgtgtcggtgtcg 30502388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 30542789 - 30542731
Alignment:
Q  237 acaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 297  Q
    ||||||||||||| ||||||||||||| ||||||||| ||  ||| |||||||| ||||||    
T  30542789 acaccgctaataatttgagaaaatcacttaattcagtgta--attatatgtgtcggtgtcg 30542731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 32767004 - 32766930
Alignment:
Q  234 ccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaa 310  Q
    |||||||||||||||| ||||||||||| || |||||| | ||  ||| |||||||  ||||||||| |||||||||    
T  32767004 ccgacaccgctaataatttgagaaaatcgcacaattcaatgta--attatatgtgtttgtgtcgtgtcggtgtcgaa 32766930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 36838544 - 36838606
Alignment:
Q  237 acaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgtt 301  Q
    ||||||||||||| |||||||||| |||||||| ||| ||  ||| |||||||| ||||||||||    
T  36838544 acaccgctaataatttgagaaaattacataatttagtgta--attatatgtgtcggtgtcgtgtt 36838606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 21616755 - 21616799
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  21616755 acacgccgacaccgctaataatttgagaaaatcacataattcagt 21616799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 21782891 - 21782840
Alignment:
Q  222 aacacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||| |||||||||||| |||||||| |||||||||||||||||||||||    
T  21782891 aacactgacacgccgacactgctaataatttgagaaaatcacataattcagt 21782840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 236 - 306
Target Start/End: Original strand, 44860320 - 44860388
Alignment:
Q  236 gacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgt 306  Q
    |||||||||||||| ||||||||||| ||||||||||| ||  ||| |||||||| |||||||||||||||    
T  44860320 gacaccgctaataatttgagaaaatcgcataattcagtgta--attatatgtgtcggtgtcgtgttggtgt 44860388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 31284035 - 31284080
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataat 268  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||    
T  31284035 acacttacacgccgacactgctaataatttgagaaaatcacataat 31284080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 37411306 - 37411266
Alignment:
Q  233 gccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  37411306 gccgacaccgctaataatttgagaaaatcacataattcagt 37411266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 18889651 - 18889575
Alignment:
Q  235 cgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 313  Q
    |||| |||||||||||||||||||||||||||||||||| ||  ||  |||||||| ||||| |||| |||||| ||||    
T  18889651 cgacgccgctaataaattgagaaaatcacataattcagtgta--atcatatgtgtcggtgtcttgtttgtgtcggacac 18889575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 23718013 - 23718063
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| |||| |||||||||||||||| |||||||| ||||||||||||||    
T  23718013 acactgacacaccgacaccgctaataatttgagaaagtcacataattcagt 23718063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 24105685 - 24105735
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| |||| |||||||||||||||| |||||||| ||||||||||||||    
T  24105685 acactgacacaccgacaccgctaataatttgagaaagtcacataattcagt 24105735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 231 - 273
Target Start/End: Original strand, 28677904 - 28677946
Alignment:
Q  231 acgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||||||||||||||||| |||| ||||||||||||||||||    
T  28677904 acgccgacaccgctaataatttgaaaaaatcacataattcagt 28677946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 273
Target Start/End: Original strand, 24894357 - 24894426
Alignment:
Q  205 atgaagcaaggacac-cgaacacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||| |||||| || ||||| |||||||||||| |||||||| || | ||||||||||||||||||    
T  24894357 atgaagcacggacacacggacactgacacgccgacacagctaataatttaaaaaaatcacataattcagt 24894426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 31808064 - 31808134
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgt 295  Q
    ||||| |||| |||||||||||||||| || | |||||||||||||||||| ||  ||| |||||||||||||    
T  31808064 acactgacacaccgacaccgctaataatttaacaaaatcacataattcagtgta--attatatgtgtcagtgt 31808134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 18276518 - 18276558
Alignment:
Q  233 gccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  18276518 gccgacaccgctaataatttgagaaaatcacttaattcagt 18276558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 231 - 273
Target Start/End: Complemental strand, 10535823 - 10535781
Alignment:
Q  231 acgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||||||| |||||| |||||||||| ||||||||||||    
T  10535823 acgccgacaccgataataatttgagaaaatgacataattcagt 10535781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 18420500 - 18420458
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattca 271  Q
    ||||||| |||| |||||||| |||||||||||||||||||||    
T  18420500 acacgccaacactgctaataatttgagaaaatcacataattca 18420458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 21374771 - 21374721
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| |||||||||||| |||||||| |||| ||||| ||||||||||||    
T  21374771 acactaacacgccgacacagctaataatttgaaaaaattacataattcagt 21374721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 30404922 - 30404872
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| |||||||||||| | |||||| |||| ||||||||||||||||||    
T  30404922 acactgacacgccgacacggttaataatttgaaaaaatcacataattcagt 30404872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 36409689 - 36409619
Alignment:
Q  233 gccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 307  Q
    |||||||||||| |||| |||| |||||||||||||| ||| |||    ||||||||| ||||| ||||||||||    
T  36409689 gccgacaccgctgataatttgaaaaaatcacataatttagtgtaa----ttatgtgtcggtgtcatgttggtgtc 36409619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 92794 - 92844
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| ||||||||||||||||||||| |||||||||| ||||||||||||    
T  92794 acactgacacgccgacaccgctaataatttgagaaaattacataattcagt 92844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 4987365 - 4987313
Alignment:
Q  221 gaacacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||||| |||||||||||| |||||||| |||| ||||||||||||||||||    
T  4987365 gaacactgacacgccgacacagctaataatttgaaaaaatcacataattcagt 4987313  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 308
Target Start/End: Complemental strand, 8039901 - 8039824
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcg 308  Q
    ||||||| ||||||||||||| |||||||||| | |||||||||| ||  ||| |||||||| ||||||||| |||||||    
T  8039901 acacgccaacaccgctaataatttgagaaaattatataattcagtgta--attatatgtgtcggtgtcgtgtcggtgtcg 8039824  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 8383250 - 8383294
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
T  8383250 acacgccgacaccgctaataatttgagaaaatcatataattcagt 8383294  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 26290358 - 26290431
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgt 298  Q
    ||||| |||||||||||||  |||||| |||||||||||||||| ||| |||||  ||| ||||||||||||||||    
T  26290358 acactgacacgccgacaccattaataatttgagaaaatcacatagttcggttta--attatatgtgtcagtgtcgt 26290431  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 8413038 - 8412963
Alignment:
Q  202 tcaatgaagcaaggacaccgaacacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaa 277  Q
    ||||||||||| |||||||| ||| | |||  |||||||  ||||||| ||||||||| |||||||||||||||||    
T  8413038 tcaatgaagcacggacaccggacattgacagaccgacacaactaataatttgagaaaaacacataattcagtttaa 8412963  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 5407313 - 5407271
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattca 271  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  5407313 acacgccgacaccgctaaaaatttgagaaaatcacataattca 5407271  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 10690333 - 10690284
Alignment:
Q  224 cacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||||||| | ||||||||||||||  ||||||||||||||||||||||    
T  10690333 cacttacactcggacaccgctaataatctgagaaaatcacataattcagt 10690284  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 10954936 - 10954989
Alignment:
Q  220 cgaacacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||||| ||||||||||||  ||||||| |||| ||||||||||||||||||    
T  10954936 cgaacactgacacgccgacacaactaataatttgaaaaaatcacataattcagt 10954989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 49505220 - 49505154
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 297  Q
    |||||| || ||||||||||| ||||||||||||||||||| ||| ||  ||| |||||||||||||||    
T  49505220 acacgcagagaccgctaataatttgagaaaatcacataatttagtgta--attatatgtgtcagtgtcg 49505154  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 5441103 - 5441055
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattca 271  Q
    ||||| |||||||| ||||||||| || |||||||||||||||||||||    
T  5441103 acactgacacgccgtcaccgctaaaaatttgagaaaatcacataattca 5441055  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 7928448 - 7928509
Alignment:
Q  234 ccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcg 297  Q
    |||||||||||||||| |||| |||||||||||||||||| ||  ||| |||||||| ||||||    
T  7928448 ccgacaccgctaataatttgaaaaaatcacataattcagtgta--attatatgtgtcggtgtcg 7928509  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 12704000 - 12704044
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||||||||||| ||||||| ||||||||| |||||||||||||    
T  12704000 acacgccgacaccactaataatttgagaaaagcacataattcagt 12704044  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 34307846 - 34307802
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||| |||||||||||||| |||||||||||||||| ||||||    
T  34307846 acacgctgacaccgctaataatttgagaaaatcacatatttcagt 34307802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 40052319 - 40052367
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattca 271  Q
    ||||| |||||||||||| |||||||| |||| ||||||||||||||||    
T  40052319 acactgacacgccgacacagctaataatttgaaaaaatcacataattca 40052367  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 2620125 - 2620070
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaac 278  Q
    ||||| ||||||||||||| ||||| | ||||||||||||||||||| ||| ||||    
T  2620125 acactgacacgccgacaccactaatcatttgagaaaatcacataattaagtgtaac 2620070  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 9800027 - 9800074
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattc 270  Q
    ||||| ||||||||||||| ||||||| |||||||||| |||||||||    
T  9800027 acactgacacgccgacacctctaataatttgagaaaattacataattc 9800074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 300
Target Start/End: Complemental strand, 11313861 - 11313797
Alignment:
Q  234 ccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgt 300  Q
    ||||||| |||||||| ||||||||||||||||||| ||| ||  ||| ||||||| ||||||||||    
T  11313861 ccgacactgctaataatttgagaaaatcacataatttagtgta--attatatgtgttagtgtcgtgt 11313797  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 273
Target Start/End: Original strand, 14979175 - 14979218
Alignment:
Q  230 cacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||||||||| |||||||| |||| ||||||||||||||||||    
T  14979175 cacgccgacacagctaataatttgaaaaaatcacataattcagt 14979218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 313
Target Start/End: Original strand, 25064902 - 25064982
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 313  Q
    ||||||||||||||||||| | |||| |||||||||||||| ||| |||    ||||||||  || |||||||||||||| ||||    
T  25064902 acacgccgacaccgctaatgatttgaaaaaatcacataatttagtgtaa----ttatgtgttggtatcgtgttggtgtcggacac 25064982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 1438791 - 1438841
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| |||| |||||| |||||| || |||||||||||||||||||||||    
T  1438791 acactgacacaccgacatcgctaacaatttgagaaaatcacataattcagt 1438841  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 21479105 - 21479155
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| |||||||||||| |||||||| |||| ||||||||| ||||||||    
T  21479105 acactgacacgccgacacagctaataatttgaaaaaatcacacaattcagt 21479155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 21720751 - 21720801
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| |||||||||||||| |||||| ||||||| ||| |||||||||||    
T  21720751 acactgacacgccgacaccgataataatttgagaatatctcataattcagt 21720801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 313
Target Start/End: Original strand, 14209106 - 14209188
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 313  Q
    ||||||||||||  ||||||| || | |||||||||||||||||| ||  |||  | ||||||||||||||| ||||||| ||||    
T  14209106 acacgccgacacaactaataattttaaaaaatcacataattcagtgta--attacaagtgtcagtgtcgtgtcggtgtcggacac 14209188  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 24633763 - 24633800
Alignment:
Q  233 gccgacaccgctaataaattgagaaaatcacataattc 270  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  24633763 gccgacaccactaataatttgagaaaatcacataattc 24633800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 307
Target Start/End: Original strand, 28678290 - 28678372
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 307  Q
    ||||| ||| |||||| | |||||||| || | |||||||||||||| ||| |||  || |||||||| ||||||||||||||||    
T  28678290 acactgacatgccgacgctgctaataatttaataaaatcacataatttagtataa--ttgtatgtgtcggtgtcgtgttggtgtc 28678372  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 32429455 - 32429402
Alignment:
Q  220 cgaacacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    |||||| | |||| |||||| ||||||||| || ||||||||||||||||||||    
T  32429455 cgaacattgacactccgacaacgctaataatttaagaaaatcacataattcagt 32429402  T

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Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 9809 - 9737
Alignment:
Q  233 gccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 307  Q
    |||||| || ||||||| ||||||||||||| ||||||||| ||  ||| |||||||| ||||||||||||||||    
T  9809 gccgacgccactaataatttgagaaaatcacttaattcagtgta--attatatgtgtcggtgtcgtgttggtgtc 9737  T

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Target: scaffold1528 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 229 - 306
Target Start/End: Original strand, 1028 - 1103
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgt 306  Q
    |||| |||||||||||||||| |||| ||||| |||||||||||| ||||  | ||||||||||||| |||| |||||    
T  1028 acacaccgacaccgctaataatttgaaaaaattacataattcagtgtaac--tatatgtgtcagtgtggtgtcggtgt 1103  T

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Target: scaffold0306 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 13387 - 13437
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| ||||||||||||  ||||||| |||||||||||||||||||||||    
T  13387 acactgacacgccgacacaactaataatttgagaaaatcacataattcagt 13437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 21940 - 21890
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| ||||||||||||  ||||||| |||||||||||||||||||||||    
T  21940 acactgacacgccgacacaactaataatttgagaaaatcacataattcagt 21890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 51798 - 51848
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||| |||||||||||| |||||||| |||| ||||||||||||||||||    
T  51798 acactgacacgccgacacagctaataatttgaaaaaatcacataattcagt 51848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 20165 - 20239
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtg 305  Q
    |||||||||||| |||||||| |||| |||||||||||||||||| ||  |||  | ||||||||||||||| ||||    
T  20165 acacgccgacacagctaataatttgaaaaaatcacataattcagtgta--attacaagtgtcagtgtcgtgtcggtg 20239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 53173 - 53217
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagt 273  Q
    ||||||||| ||||| ||||| |||||||||||||||||||||||    
T  53173 acacgccgataccgccaataatttgagaaaatcacataattcagt 53217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 135378 - 135309
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgt 300  Q
    |||| ||||||| |||||||| |||||||||||||||||||| || ||  ||| |||||||| |||||||||    
T  135378 acacaccgacactgctaataatttgagaaaatcacataattctgtgta--attatatgtgtcggtgtcgtgt 135309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 44584 - 44516
Alignment:
Q  236 gacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgt 306  Q
    ||||||||||| || ||||||||||||||||||||||| ||  ||| |||||||| || |||||| |||||    
T  44584 gacaccgctaaaaatttgagaaaatcacataattcagtgta--attatatgtgtcggtatcgtgtcggtgt 44516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 28834 - 28885
Alignment:
Q  220 cgaacacttacacgccgacaccgctaataaattgagaaaatcacataattca 271  Q
    |||||||| |||||||||||||| |||||| || |||||||| |||||||||    
T  28834 cgaacactaacacgccgacaccgttaataatttaagaaaatcgcataattca 28885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 270
Target Start/End: Complemental strand, 192321 - 192274
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattc 270  Q
    ||||| |||||||||||||| |||||| |||||||||| |||||||||    
T  192321 acactgacacgccgacaccgttaataatttgagaaaattacataattc 192274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 263430 - 263362
Alignment:
Q  237 acaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtc 307  Q
    |||| |||||||| ||||||||| ||||||||||||| ||  ||| || ||||||||||||||| ||||||    
T  263430 acactgctaataatttgagaaaaccacataattcagtgta--attataagtgtcagtgtcgtgtcggtgtc 263362  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 313
Target Start/End: Original strand, 241581 - 241669
Alignment:
Q  223 acacttacacgccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 313  Q
    ||||| |||||||||||| |||||||| |||  |||||||||||||| ||| ||  ||| |  ||||| ||||||||||||||||| ||||    
T  241581 acactgacacgccgacacagctaataatttggaaaaatcacataatttagtgta--attatgagtgtcggtgtcgtgttggtgtcggacac 241669  T

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Target: scaffold0085 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 26386 - 26428
Alignment:
Q  229 acacgccgacaccgctaataaattgagaaaatcacataattca 271  Q
    ||||| ||||||| ||||||| |||||||||||||||||||||    
T  26386 acacgtcgacaccactaataatttgagaaaatcacataattca 26428  T

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Target: scaffold0136 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 3911 - 3833
Alignment:
Q  233 gccgacaccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacac 313  Q
    |||||||| | |||||| || | |||||||||||||||||| |||  ||  | ||||||||||||||||||||||| ||||    
T  3911 gccgacacggttaataatttaaaaaaatcacataattcagtgtaa--ttacaagtgtcagtgtcgtgttggtgtcggacac 3833  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 238 - 314
Target Start/End: Complemental strand, 68299 - 68225
Alignment:
Q  238 caccgctaataaattgagaaaatcacataattcagtttaacattttatgtgtcagtgtcgtgttggtgtcgaacaca 314  Q
    ||||| |||||| |||||||||||| |||||| ||| |||  || || ||||||||||||| | |||||||||||||    
T  68299 caccgttaataatttgagaaaatcatataatttagtataa--ttataggtgtcagtgtcgtatcggtgtcgaacaca 68225  T

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