View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4617_high_2 (Length: 571)
Name: NF4617_high_2
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4617_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 9 - 554
Target Start/End: Complemental strand, 53694625 - 53694078
Alignment:
| Q |
9 |
acatcatcactaccaaataagttaaagtgcaccacatcaatggaaaaatgagatcaaggacaaattcataatgattaatatttgcacgtcaaattgaaag |
108 |
Q |
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| T |
53694625 |
acatcatcactaccaaataagttaaagtgcaccacatcagtggaaaaatgagatcaaggacaaattcataatgattaatatttgcacgtcaaattgaaag |
53694526 |
T |
|
| Q |
109 |
aatttgtaattgtatggaccaaaacctaagtttgttatatttgcaaagaccatttacatatttaattatttatttttatagcgattgttgaatttggcca |
208 |
Q |
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| T |
53694525 |
aatttgtaattgtatggaccaaaacctaagtttgttatatttgcaaagaccatttacatatttaattatttatttttatagcgattgttgaatttggcca |
53694426 |
T |
|
| Q |
209 |
agtaattgatatggtttgctcttaaaataaaattagatgtgnnnnnnnnnnnnaaggaataaaaagagatgtattgtttgttacatcatatagctcagtc |
308 |
Q |
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| T |
53694425 |
agtaattgatatggtttgctcttaaaataaaattagatgtgtttttattttttaaggaataaaaagagatgtattgtttgttacatcatatagctcagtc |
53694326 |
T |
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| Q |
309 |
ttgatataaaaagagatggatttaaacaagacataattatcaaattcacatttctccctattgtccttttcgtcctctcatatggcctcaaatgacaaga |
408 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53694325 |
ttgaaataaaaagagatggatttaaacaagacataattatcaaattcacatttctccctattgtccttttcgtcctctcatatggcctcaaatgacaaga |
53694226 |
T |
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| Q |
409 |
tttttagattattatccaacatgatctcttaaactttccctccacttagttaaccatttgaaaaccattcataactcatttacatagcaaataaacctc- |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53694225 |
tttttagattattatccaacatgatctcttaaactttccctccacctagttaaccatttgaaaaccattcataactcatttacatagcaaataaacctca |
53694126 |
T |
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| Q |
508 |
-aatactataggggaggttacatataacctcaaatttttgctggattt |
554 |
Q |
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| T |
53694125 |
aaatactataggggaggttacatataacctcaaatttttgctggattt |
53694078 |
T |
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