View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4617_high_24 (Length: 220)
Name: NF4617_high_24
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4617_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 72 - 203
Target Start/End: Original strand, 36732435 - 36732566
Alignment:
| Q |
72 |
taaaacaaattttgagaataatttttaaagatctgctaatccaactagtgtcatccatgccttctctagcaccatcgaagactgcaccaattatcttcat |
171 |
Q |
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| T |
36732435 |
taaaacaaattttgagaataatttttaaagatctgctaatccgactagtgtcatccatgccttctctagcaccatcgaagactgcaccaattatcttcat |
36732534 |
T |
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| Q |
172 |
aatggtccttgacacactaaaacaactttcat |
203 |
Q |
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| T |
36732535 |
aatgatccttgacatactaaaacaactttcat |
36732566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 36731609 - 36731655
Alignment:
| Q |
28 |
atttaagtacttaagttatatctccacgtctagctcagcatacttaa |
74 |
Q |
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| T |
36731609 |
atttaagtacttaagttatatctctacgtctagctcatcatacttaa |
36731655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 41550578 - 41550447
Alignment:
| Q |
72 |
taaaacaaattttgagaataatttttaaagatctgctaatccaactagtgtcatccatgccttctctagcaccatcgaagactgcaccaattatcttcat |
171 |
Q |
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| T |
41550578 |
taaaacaatttttgaggataattttcaaagaccagctaatccaactagtgtcattcaggccttctctagcactatcgaagattgcaccaataatcttctt |
41550479 |
T |
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| Q |
172 |
aatggtccttgacacactaaaacaactttcat |
203 |
Q |
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| T |
41550478 |
caaggtcctcggcacactgaaacaattttcat |
41550447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 29515562 - 29515506
Alignment:
| Q |
106 |
gctaatccaactagtgtcatccatgccttctctagcaccatcgaagactgcaccaat |
162 |
Q |
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| T |
29515562 |
gctaatccaactagtgtcatccaagccttctctagaactttcgaagactacaccaat |
29515506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 37752240 - 37752303
Alignment:
| Q |
106 |
gctaatccaactagtgtcatccatgccttctctagcaccatcgaagactgcaccaattatcttc |
169 |
Q |
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| T |
37752240 |
gctaatccaactagtgtcattcaaatgttctctagcactatcgaagattgcaccaataatcttc |
37752303 |
T |
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