View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4617_high_3 (Length: 546)
Name: NF4617_high_3
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4617_high_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Original strand, 36730443 - 36730994
Alignment:
| Q |
1 |
ataaaatggatggtgatgattttaggtatattccatttggatttggtaggaggggttgtcctggttcatcacttgctttaacggttatacatttgacaat |
100 |
Q |
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| T |
36730443 |
ataaaatggatggtgatgattttaggtatattccatttggatttggtaggaggggttgtcctggttcatcacttgctttaacggttatacatttgacaat |
36730542 |
T |
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| Q |
101 |
tgctggattgattcaatgttttgaatggaaaattaaaggtggtgataagattgatatggaagaagggtcgtcattttctgctggattggcaaaacctcta |
200 |
Q |
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| T |
36730543 |
tgctggattgattcaatgttttgaatggaaaattaaaggtggtgataagattgatatggaagaagggtcgtcattttctgctggattggcaaaacctcta |
36730642 |
T |
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| Q |
201 |
gtttgttaccctgttacttgttttaatcctttttaagttttatgattattgcatttaccatataagataaatgttgtttaggaaaataaaagtagtacta |
300 |
Q |
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| T |
36730643 |
gtttgttaccctgttacttgttttaatcctttttaagttttatgattattgcatttaccgtataagataaatgttgtttaggaaaataaaagtagtacta |
36730742 |
T |
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| Q |
301 |
ctgttattaccttgcattatgatatgttcatatgacacctacccgtgatgttaggttttgaattttgtggca----ttgttgttatggtttatgtgtttg |
396 |
Q |
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| T |
36730743 |
ctgttattaccttgcattatgatatgttcatatgacacctacccgtgatgttaggttttgaattttgtgtcattgtttgttgttatggtttatgtatttg |
36730842 |
T |
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| Q |
397 |
gagtttggtttatgctataattttttggcattagtttccattattc--nnnnnnnnnnnnaaaggtatttccattattcatactatataatatcatttta |
494 |
Q |
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| T |
36730843 |
gagtttggtttatgctataattttttggcataagtttccattattcttttttttttttttaaaggtgtttccattattcatactatataatatcatttta |
36730942 |
T |
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| Q |
495 |
atgatgctctaacaaatcataaagcaataatgagattatactgtccagaagt |
546 |
Q |
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| T |
36730943 |
atgatgctctaacaaatcataaagcaataatgagattatactgtcctgaagt |
36730994 |
T |
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