View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4617_high_4 (Length: 451)

Name: NF4617_high_4
Description: NF4617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4617_high_4
NF4617_high_4
[»] chr6 (2 HSPs)
chr6 (217-447)||(13146442-13146667)
chr6 (345-451)||(28764840-28764935)
[»] chr7 (5 HSPs)
chr7 (242-451)||(24510068-24510272)
chr7 (217-423)||(24511043-24511249)
chr7 (18-162)||(24508685-24508824)
chr7 (145-203)||(24508961-24509020)
chr7 (228-270)||(2046892-2046934)
[»] chr4 (2 HSPs)
chr4 (23-125)||(46301500-46301598)
chr4 (227-295)||(46632290-46632358)
[»] chr5 (1 HSPs)
chr5 (289-339)||(15162579-15162629)
[»] chr8 (1 HSPs)
chr8 (218-264)||(19400770-19400816)
[»] chr3 (1 HSPs)
chr3 (236-278)||(27427602-27427644)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 217 - 447
Target Start/End: Complemental strand, 13146667 - 13146442
Alignment:
Q  217 ctttgatttcgttctactttatgatatacttaaatattgaatttaaatgtgatataatgtttggacctttgatagctaatagttatgaccaatgattgac 316  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||| ||| |||||    
T  13146667 ctttggtttcgttctactttatgatatacttacatattgaatttaaaggtgatatagtgtttggacctttgatagctaatggttatgacctatgcttgac 13146568  T
Q  317 aactcctttgcactctaatgtattcaaatgtatatattccatacagcttgctcctgtttgttgtgccaatgcaattagacatgaaaactaatttgccgtc 416  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||      
T  13146567 aactcctttgcactctaatgtattcaactgtatataatccatacagcttgcccctgtttgttgtgccaatgcaattagacacgaaaactaatttgccg-- 13146470  T
Q  417 tacttttaattttcagaaaatgttcaatggt 447  Q
       ||| | ||||||||||||||||||||||    
T  13146469 ---tttaatttttcagaaaatgttcaatggt 13146442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 345 - 451
Target Start/End: Original strand, 28764840 - 28764935
Alignment:
Q  345 tgtatatattccatacagcttgctcctgtttgttgtgccaatgcaattagacatgaaaactaatttgccgtctacttttaattttcagaaaatgttcaat 444  Q
    |||||||||||||||||||||||      || ||||||||||||||||||||||||||||| || |||||||      ||||||||||||||||||||||    
T  28764840 tgtatatattccatacagcttgcc-----tttttgtgccaatgcaattagacatgaaaactgatctgccgtc------taattttcagaaaatgttcaat 28764928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 9e-77; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 242 - 451
Target Start/End: Original strand, 24510068 - 24510272
Alignment:
Q  242 atacttaaatattgaatttaaatgtgatataatgtttggacctttgatagctaatagttatgaccaatgattgacaactcctttgcactctaatgtattc 341  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||    
T  24510068 atacttacatattgaatttaaatgtgatatagtgtttggacctttgatagctaatggttatgacctatgattgacagctcctttgcactctaatgtattc 24510167  T
Q  342 aaatgtatatattccatacagcttgctcctgtttgttgtgccaatgcaattagacatgaaaactaatttgccgtctacttttaattttcagaaaatgttc 441  Q
    || ||||||||||||||||||||||| |||||||||| |||||||||| |||||| |||||||||||||||||||||     | ||||||||||||||||    
T  24510168 aattgtatatattccatacagcttgcccctgtttgttttgccaatgcatttagacttgaaaactaatttgccgtcta-----atttttcagaaaatgttc 24510262  T
Q  442 aatggtggat 451  Q
    ||||||||||    
T  24510263 aatggtggat 24510272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 217 - 423
Target Start/End: Complemental strand, 24511249 - 24511043
Alignment:
Q  217 ctttgatttcgttctactttatgatatacttaaatattgaatttaaatgtgatataatgtttggacctttgatagctaatagttatgaccaatgattgac 316  Q
    ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||    
T  24511249 ctttggttacgttctactttatgatatacttacatattgaatttaaatgtgatatattgtttgcacctttgatagctaatagttatgacctatgattgac 24511150  T
Q  317 aactcctttgcactctaatgtattcaaatgtatatattccatacagcttgctcctgtttgttgtgccaatgcaattagacatgaaaactaatttgccgtc 416  Q
    |||||||| ||| |||||| ||| ||| |||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24511149 aactccttcgcaatctaatatatccaactgtatatattccatactgcttgtccctgtttgttgtgccaatgcaattagacatgaaaactaatttgtcgtc 24511050  T
Q  417 tactttt 423  Q
    || ||||    
T  24511049 taatttt 24511043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 24508685 - 24508824
Alignment:
Q  18 actacaatacatattagtattacaatagccttgtatataaatattaaatgtactcctcattcacaatcaataagtaagtattacactcatttctctcatt 117  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    | ||||||||||||||||||    
T  24508685 actacaatacatattagtagtacaatagccttgtatataaatattaaatgcactc-tcattcacaatcaataagta----tcacactcatttctctcatt 24508779  T
Q  118 tcatattaactagtttagtagtttgctaaatattgagaaagttat 162  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  24508780 tcatattaactagtttagtagtttgttaaatattgagaaagttat 24508824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 24508961 - 24509020
Alignment:
Q  145 aaatattgagaaagtt-attaaatgaacctaaagaaggtaatatggtatactaaagatgc 203  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  24508961 aaatattgagaaagtttattaaatgaacgtaaagaaggtaatatggtatactaaagatgc 24509020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 270
Target Start/End: Original strand, 2046892 - 2046934
Alignment:
Q  228 ttctactttatgatatacttaaatattgaatttaaatgtgata 270  Q
    |||||||||||||||||| || || ||||||||||||||||||    
T  2046892 ttctactttatgatatacatacatcttgaatttaaatgtgata 2046934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 125
Target Start/End: Original strand, 46301500 - 46301598
Alignment:
Q  23 aatacatattagtattacaatagccttgtatataaatattaaatgtactcctcattcacaatcaataagtaagtattacactcatttctctcatttcata 122  Q
    |||||||||||||| |||||||||||||||||| |||| ||||||||||| ||||||| |||||||  | ||  |||| |||||||||||||||||||||    
T  46301500 aatacatattagtagtacaatagccttgtatatgaatactaaatgtactcttcattcataatcaat--gcaa--attaaactcatttctctcatttcata 46301595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 46632358 - 46632290
Alignment:
Q  227 gttctactttatgatatacttaaatattgaatttaaatgtgatataatg-tttggacctttgatagctaa 295  Q
    ||||||||||||||||||  || |||||||| ||| |||||||||| || |||||||||||| |||||||    
T  46632358 gttctactttatgatatagatacatattgaa-ttatatgtgatatagtgttttggacctttggtagctaa 46632290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 15162629 - 15162579
Alignment:
Q  289 tagctaatagttatgaccaatgattgacaactcctttgcactctaatgtat 339  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  15162629 tagctaatggttatgacctatgattgacaactcctttgcactctaatgtat 15162579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 19400770 - 19400816
Alignment:
Q  218 tttgatttcgttctactttatgatatacttaaatattgaatttaaat 264  Q
    |||| |||||||||||||||| |||||| ||||||||||||||||||    
T  19400770 tttggtttcgttctactttattatatacataaatattgaatttaaat 19400816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 27427644 - 27427602
Alignment:
Q  236 tatgatatacttaaatattgaatttaaatgtgatataatgttt 278  Q
    |||||||||| |||||||||| ||||||||| |||||||||||    
T  27427644 tatgatatacataaatattgagtttaaatgttatataatgttt 27427602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University